GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001941-TA|BGIBMGA001941-PA|undefined
         (93 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   0.40 
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   1.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   1.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   6.5  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    19   8.5  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short
          gastrulation protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 0.40
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 27 GLFVVIVVVCRLRAGPPQPPDGVACRHQPRESV 59
          GLF V+V +   R   P   DG   R++  E V
Sbjct: 5  GLFCVLVTLATARNKAPLLDDGTRTRNKAAECV 37


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 1.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 7   RTEACKTVKNEEKRRN 22
           R+EA K VKN +K R+
Sbjct: 261 RSEASKVVKNAQKLRH 276


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 7/15 (46%), Positives = 8/15 (53%)

Query: 41  GPPQPPDGVACRHQP 55
           GP  PP G  C + P
Sbjct: 161 GPALPPTGFLCNNYP 175


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.4 bits (38), Expect = 6.5
 Identities = 6/10 (60%), Positives = 6/10 (60%)

Query: 42   PPQPPDGVAC 51
            P QPPD   C
Sbjct: 1100 PEQPPDKATC 1109


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 19.0 bits (37), Expect = 8.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 19  KRRNVQMVGLFVVIVVVCRL 38
           K RN++ V     +V++C L
Sbjct: 269 KSRNIEGVSFGTNLVILCAL 288


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,704
Number of Sequences: 317
Number of extensions: 859
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 93
length of database: 114,650
effective HSP length: 48
effective length of query: 45
effective length of database: 99,434
effective search space:  4474530
effective search space used:  4474530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)