GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001941-TA|BGIBMGA001941-PA|undefined
         (93 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   0.80 
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   1.8  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    23   7.4  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    23   7.4  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    23   7.4  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    23   7.4  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    23   9.8  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 21  RNVQMVGLFVVIVVVCRLRAGPPQPPDGVACRHQPRESVTSHSRERYTRILSPRDQQVSR 80
           RNV  +G  V I       + PP+PP   + R     S  +HS +      SP D     
Sbjct: 261 RNVNNLGSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSD--AYG 318

Query: 81  HPTRHAK 87
            P +H K
Sbjct: 319 DPNQHLK 325


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 33   VVVCRLRAGPPQPPDGVACRHQPRESVTSHSRERYTRILSPRDQ 76
            ++V RL  G P P D V    +PR S    S +       P DQ
Sbjct: 1067 LLVSRLLKGEPLPKDVVVKEFKPRPSTKPFSTQDEVLTKLPVDQ 1110


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 43  PQPPDGVACRHQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPHSAR 93
           P P +G    H+P +        ++ R +     +    P +H +H H  R
Sbjct: 268 PVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHEEHCHHGR 318


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 9/31 (29%), Positives = 19/31 (61%)

Query: 17  EEKRRNVQMVGLFVVIVVVCRLRAGPPQPPD 47
           E  +RNV+ + +++  ++V   +AG P+  D
Sbjct: 107 ESLQRNVERIKVYLAHLIVFPRKAGQPKKGD 137


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 7/32 (21%), Positives = 18/32 (56%)

Query: 49  VACRHQPRESVTSHSRERYTRILSPRDQQVSR 80
           V C+  P++ +T + +   ++++ P D   S+
Sbjct: 139 VHCKRMPKKEITLNQKLYVSQVIGPADAPKSK 170


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 43  PQPPDGVACRHQPRESVTSHSRERYTRILSPRDQQVSRHPTRH 85
           PQ P+   C   P     +H+  R +  L  +D   S HP  H
Sbjct: 249 PQQPNSQPCEQHP-----AHANLRRSVSLGSKDYLKSSHPPVH 286


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 20  RRNVQMVGLFVVIVVVCRLRAGPPQPPDGVAC 51
           R N  +   F +I+     +A P  P DG  C
Sbjct: 151 RHNENVARAFELIISEIEKQANPSPPGDGKGC 182


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 436,004
Number of Sequences: 5004
Number of extensions: 14642
Number of successful extensions: 31
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 9
length of query: 93
length of database: 2,362,478
effective HSP length: 62
effective length of query: 31
effective length of database: 2,052,230
effective search space: 63619130
effective search space used: 63619130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 46 (22.6 bits)