Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001941-TA|BGIBMGA001941-PA|undefined
(93 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical pr... 29 0.60
Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical pr... 29 0.60
AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative acti... 29 0.60
AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical... 27 1.4
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 26 3.2
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 26 3.2
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 26 3.2
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 26 3.2
Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical pr... 25 7.4
AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical ... 25 7.4
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr... 25 9.8
AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP ... 25 9.8
>Z49887-3|CAC70079.1| 639|Caenorhabditis elegans Hypothetical
protein F09B9.2b protein.
Length = 639
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 52 RHQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPHS 91
R++P+ T + Y +L +Q RHP +AK P++
Sbjct: 261 RNEPKYQSTFGQHQAYMYLLPEVEQTYLRHPVMNAKEPNA 300
>Z49887-2|CAA90057.1| 625|Caenorhabditis elegans Hypothetical
protein F09B9.2a protein.
Length = 625
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 52 RHQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPHS 91
R++P+ T + Y +L +Q RHP +AK P++
Sbjct: 247 RNEPKYQSTFGQHQAYMYLLPEVEQTYLRHPVMNAKEPNA 286
>AF068867-1|AAC35506.1| 639|Caenorhabditis elegans putative
actin-binding proteinUNC-115 protein.
Length = 639
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 52 RHQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPHS 91
R++P+ T + Y +L +Q RHP +AK P++
Sbjct: 261 RNEPKYQSTFGQHQAYMYLLPEVEQTYLRHPVMNAKEPNA 300
>AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical
protein Y71H2AM.3 protein.
Length = 483
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 15 KNEEKRRNVQMVGLFVVIVVVCRLRAGPPQPPDGVACRHQPRE----SVTSHSRERYT 68
+N+E RR ++ + VV V +R G P P+ + R + S+ RER T
Sbjct: 46 ENQENRRTIKYADINVVNVTDNYIRIGAPPTPEALIKREKEAANGPMSIKKQQRERST 103
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 16 NEEKRRNVQMVGLFVVIVVVCRLRA----GPPQPPDGVACRHQPRESVTSHSRER 66
N ++ NV+ G + VV R RA PP PP A HQP T+ + ER
Sbjct: 528 NIKELENVETSGE-ALAQVVNRQRAPSIQAPPLPPRLSASEHQPHHPYTNTNSER 581
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 16 NEEKRRNVQMVGLFVVIVVVCRLRA----GPPQPPDGVACRHQPRESVTSHSRER 66
N ++ NV+ G + VV R RA PP PP A HQP T+ + ER
Sbjct: 528 NIKELENVETSGE-ALAQVVNRQRAPSIQAPPLPPRLSASEHQPHHPYTNTNSER 581
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 16 NEEKRRNVQMVGLFVVIVVVCRLRA----GPPQPPDGVACRHQPRESVTSHSRER 66
N ++ NV+ G + VV R RA PP PP A HQP T+ + ER
Sbjct: 511 NIKELENVETSGE-ALAQVVNRQRAPSIQAPPLPPRLSASEHQPHHPYTNTNSER 564
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 16 NEEKRRNVQMVGLFVVIVVVCRLRA----GPPQPPDGVACRHQPRESVTSHSRER 66
N ++ NV+ G + VV R RA PP PP A HQP T+ + ER
Sbjct: 469 NIKELENVETSGE-ALAQVVNRQRAPSIQAPPLPPRLSASEHQPHHPYTNTNSER 522
>Z81522-5|CAD98731.1| 663|Caenorhabditis elegans Hypothetical
protein F32B4.4b protein.
Length = 663
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 37 RLRAGPPQPP---DGVACRHQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAK 87
R A PP+PP +G +P RE+ I++ +D + R K
Sbjct: 324 RRGASPPEPPRRQEGARRSEEPERRRLFDEREQLAHIMAAKDMYAEQQKIRAEK 377
>Z81522-4|CAB04233.1| 771|Caenorhabditis elegans Hypothetical
protein F32B4.4a protein.
Length = 771
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 37 RLRAGPPQPP---DGVACRHQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAK 87
R A PP+PP +G +P RE+ I++ +D + R K
Sbjct: 432 RRGASPPEPPRRQEGARRSEEPERRRLFDEREQLAHIMAAKDMYAEQQKIRAEK 485
>Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical
protein T22A3.5 protein.
Length = 790
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 42 PPQPPDGVACRHQPRESVTSHSRERYTRILSPRDQQ 77
PP PP + + P + + S R R+ SP Q+
Sbjct: 752 PPPPPQPMEYGYNPMKQMPSRKRGRHDDSSSPSHQK 787
>AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.14 protein.
Length = 468
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 6 GRTEA--CKTVKNEEKRRNVQMVGLFVVIVVVCRLRAGPPQPPDGVAC 51
G+T+ C+ V ++EKR + L + ++ +LR P +P + V C
Sbjct: 52 GQTQCPTCRAVVSKEKR--TKNFALTNAVTMIQKLREKPKKPANAVDC 97
>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
protein F54D1.5 protein.
Length = 1406
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 55 PRESVTSHSRERYTRILSPRDQQ 77
PRES+TS + RY P +Q+
Sbjct: 819 PRESITSTTSNRYRYSKGPEEQK 841
>AJ276018-1|CAC81666.1| 1122|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1122
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 55 PRESVTSHSRERYTRILSPRDQQ 77
PRES+TS + RY P +Q+
Sbjct: 535 PRESITSTTSNRYRYSKGPEEQK 557
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.132 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,560
Number of Sequences: 27539
Number of extensions: 98812
Number of successful extensions: 273
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 14
length of query: 93
length of database: 12,573,161
effective HSP length: 69
effective length of query: 24
effective length of database: 10,672,970
effective search space: 256151280
effective search space used: 256151280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)
- SilkBase 1999-2023 -