GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001941-TA|BGIBMGA001941-PA|undefined
         (93 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    27   2.3  
At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to ...    26   4.0  
At2g32910.1 68415.m04035 expressed protein                             25   5.3  
At4g37190.1 68417.m05265 expressed protein                             25   7.0  
At2g37930.1 68415.m04656 expressed protein                             25   7.0  
At2g46570.1 68415.m05809 laccase family protein / diphenol oxida...    25   9.3  

>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase family
           protein contains Pfam profile PF00383: Cytidine and
           deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 4   YDGRTEACKTVKNEEKRRNVQMVGLFVVIVVVCRLR----AGPPQPPDGVACRHQPRESV 59
           + G TE    V N   +RN +   L+ VI  + RLR    AG P      A R  P ESV
Sbjct: 801 HPGATEGNAAVGNAIFKRNGR--SLWNVIADIARLRWGSRAGSPDSSAKPAGRSSPNESV 858

Query: 60  TS 61
           +S
Sbjct: 859 SS 860


>At3g14770.1 68416.m01867 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 236

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 14  VKNEEKRRNVQMVGL-FVVIVVVCRLRAGPPQPPD 47
           + + +K+  ++M+GL FVV  VV  + AG  Q PD
Sbjct: 97  IMHTDKKNKMKMLGLLFVVFAVVGVIVAGSLQIPD 131


>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 42  PPQPPDGVACRHQPRESVTSH-SRERYTRILSPRDQQVSRHPTRHAKHPH 90
           PP+        ++ R  + S+ S   + R+L  R  ++ RH  R  +HPH
Sbjct: 529 PPESSSSYHIVNRDRVHLDSYRSSMDHDRLL--RQAEIERHDRREVRHPH 576


>At4g37190.1 68417.m05265 expressed protein
          Length = 562

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 13  TVKNEEKRRNVQMVGLFVVIVVVCRLRAGPPQPPDGVACRHQPRESVTSHSRERY 67
           T ++E ++RN+ +  L+    VV + +A   +  D V C  +  E  T  S+  Y
Sbjct: 106 TQRSEPRKRNLFLQSLYEEEHVVGKEKAKEIEDKDIVGCLDEEVECWTDFSKSHY 160


>At2g37930.1 68415.m04656 expressed protein
          Length = 467

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 14/55 (25%), Positives = 24/55 (43%)

Query: 39  RAGPPQPPDGVACRHQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPHSAR 93
           ++GP    + V   H  R     H+R R   IL P+ ++ +    + A  P + R
Sbjct: 143 KSGPLTFTNSVYTTHSTRTKSNGHNRTRSGPILKPKTEKNNVPSLQVASKPSNTR 197


>At2g46570.1 68415.m05809 laccase family protein / diphenol oxidase
           family protein similar to laccase [Populus balsamifera
           subsp. trichocarpa][GI:3805960]
          Length = 569

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 41  GPPQPPDGVACRHQPRESVTSHSRERYTRILSPR 74
           GPP P D      QP  +    S++ Y   + PR
Sbjct: 189 GPPPPADAFTINGQPGPNYNCSSKDVYEIQIVPR 222


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,408,808
Number of Sequences: 28952
Number of extensions: 87889
Number of successful extensions: 179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 6
length of query: 93
length of database: 12,070,560
effective HSP length: 69
effective length of query: 24
effective length of database: 10,072,872
effective search space: 241748928
effective search space used: 241748928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)