Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001940-TA|BGIBMGA001940-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(280 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 125 4e-29
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 121 5e-28
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 118 4e-27
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 118 4e-27
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 117 8e-27
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 117 8e-27
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 117 8e-27
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 114 7e-26
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 112 2e-25
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 103 1e-22
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 71 7e-13
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 71 7e-13
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 71 9e-13
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 71 1e-12
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 69 4e-12
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 68 6e-12
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 67 1e-11
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 66 2e-11
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 64 1e-10
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 63 2e-10
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 63 2e-10
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 62 3e-10
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 60 1e-09
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 56 2e-08
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 55 6e-08
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 54 1e-07
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 54 1e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 53 2e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 53 2e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 53 2e-07
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 52 4e-07
At2g47310.1 68415.m05906 flowering time control protein-related ... 50 1e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 50 2e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 2e-06
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 50 2e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 49 4e-06
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 48 5e-06
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 48 5e-06
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 48 9e-06
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 48 9e-06
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 47 1e-05
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 47 2e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 47 2e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 47 2e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 46 3e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 46 3e-05
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 46 3e-05
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 46 3e-05
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 46 3e-05
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 46 4e-05
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 46 4e-05
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 46 4e-05
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 46 4e-05
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 46 4e-05
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 45 7e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 44 9e-05
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 44 9e-05
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 44 9e-05
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 44 9e-05
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 44 9e-05
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 44 1e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 44 1e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 44 1e-04
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 43 3e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 42 3e-04
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 42 3e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 3e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 42 5e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 42 5e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 42 5e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 42 6e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 42 6e-04
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 42 6e-04
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 41 8e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 39 0.003
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 39 0.003
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 38 0.008
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 38 0.010
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 38 0.010
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.010
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.010
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 37 0.013
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 37 0.013
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 37 0.017
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 37 0.017
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 37 0.017
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 37 0.017
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 36 0.023
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 36 0.023
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 36 0.023
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 36 0.023
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.023
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 36 0.030
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 36 0.030
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.030
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.030
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.030
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 36 0.030
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 36 0.030
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.040
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 36 0.040
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 35 0.053
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 35 0.053
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 35 0.053
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 35 0.070
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 35 0.070
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 34 0.092
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 34 0.092
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.12
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.12
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 34 0.12
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 33 0.21
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 33 0.21
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 33 0.21
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 33 0.21
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 33 0.28
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 32 0.37
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 32 0.37
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 32 0.37
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 32 0.37
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 32 0.49
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 32 0.49
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 31 0.65
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 31 0.65
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.65
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.65
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 31 0.86
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.86
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 31 0.86
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 31 0.86
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 31 1.1
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 31 1.1
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 31 1.1
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 30 1.5
At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino... 30 1.5
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 30 1.5
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 30 1.5
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 30 1.5
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 30 2.0
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 30 2.0
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 30 2.0
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 29 2.6
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 29 2.6
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 29 2.6
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 29 2.6
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 29 3.5
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 3.5
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 29 4.6
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 29 4.6
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 28 6.1
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 28 6.1
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 6.1
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 28 8.0
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 125 bits (301), Expect = 4e-29
Identities = 67/160 (41%), Positives = 99/160 (61%), Gaps = 7/160 (4%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFR 61
+ F++ G+ ++VKV+RNK TG+P GY F+ F + A + NG +PGT + FR
Sbjct: 42 SCFSQTGEL-VSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGT--ELTFR 98
Query: 62 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTK 120
LN AS + + + S++VGDL+PDV DY L F Y+S++ AKV+ D ++G +K
Sbjct: 99 LNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSK 158
Query: 121 GYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPK 159
GYGFV+F E E+ A+ MNG YC T+P++I A PK
Sbjct: 159 GYGFVKFAEESERNRAMAEMNGLYC--STRPMRISAATPK 196
Score = 35.9 bits (79), Expect = 0.030
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
++W+GDL VD+ L F S+ + + KVI + +G +GYGF+ F + L
Sbjct: 25 TLWIGDLQYWVDENYLTSCF-SQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 139 AMNGYCGLGTK 149
NG GT+
Sbjct: 84 TYNGTQMPGTE 94
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 121 bits (292), Expect = 5e-28
Identities = 69/166 (41%), Positives = 101/166 (60%), Gaps = 8/166 (4%)
Query: 2 AAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
+AF +R + ++KV+RNK G GY FV F++ + A + + NG P+P T F
Sbjct: 121 SAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQP--F 178
Query: 61 RLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSG 117
RLN AS T + S++VGDL+PDV D L+ F+ KY S+K AKV+LD N+G
Sbjct: 179 RLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTG 238
Query: 118 YTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 163
+KGYGFVRFG+E+E+ A+ MNG ++ ++I A P+ K+N
Sbjct: 239 RSKGYGFVRFGDENERTKAMTEMNG-VKCSSRAMRIGPATPR-KTN 282
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
++WVGDL +D+ L F S + I + KVI + ++G ++GYGFV F + D L
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVL 163
Query: 138 YAMNG 142
NG
Sbjct: 164 QEFNG 168
Score = 39.5 bits (88), Expect = 0.002
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 18/142 (12%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTF----PVVRFRLNTASRE 68
A KV+ + TG GY FV F + E AM ++NG P + N ++
Sbjct: 228 AAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ 287
Query: 69 -----TRANMQHEREF---SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK 120
+ A + E + +++VG L V D L + F S++ I + K+ + K
Sbjct: 288 GGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPF-SEFGEIVSVKIPVG-----K 341
Query: 121 GYGFVRFGNEDEQRNALYAMNG 142
G GFV+F N AL +NG
Sbjct: 342 GCGFVQFVNRPNAEEALEKLNG 363
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 118 bits (284), Expect = 4e-27
Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++ KV+RNK TG+ GY F+ F + A + N PIP +FP FRLN AS +
Sbjct: 89 VSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIP-SFPDQLFRLNWASLSSGD 147
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNE 130
+++++VGDL+ DV DY L F + Y S+K AKV++D +G TKGYGFVRF +E
Sbjct: 148 KRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE 207
Query: 131 DEQRNALYAMNGYCGLGTKPLKICTAVPK 159
EQ A+ MNG T+P++I A K
Sbjct: 208 SEQIRAMTEMNG-VPCSTRPMRIGPAASK 235
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
++W+GDL +D+ LY FA + +AKVI + +G +GYGF+ F + L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 139 AMN 141
N
Sbjct: 122 TFN 124
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 118 bits (284), Expect = 4e-27
Identities = 63/149 (42%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++ KV+RNK TG+ GY F+ F + A + N PIP +FP FRLN AS +
Sbjct: 89 VSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTFNNAPIP-SFPDQLFRLNWASLSSGD 147
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNE 130
+++++VGDL+ DV DY L F + Y S+K AKV++D +G TKGYGFVRF +E
Sbjct: 148 KRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDE 207
Query: 131 DEQRNALYAMNGYCGLGTKPLKICTAVPK 159
EQ A+ MNG T+P++I A K
Sbjct: 208 SEQIRAMTEMNG-VPCSTRPMRIGPAASK 235
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
++W+GDL +D+ LY FA + +AKVI + +G +GYGF+ F + L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMV-SAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 139 AMN 141
N
Sbjct: 122 TFN 124
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 117 bits (282), Expect = 8e-27
Identities = 64/151 (42%), Positives = 96/151 (63%), Gaps = 8/151 (5%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRET--R 70
+VKV+RNK T + GY FV F + A + + +G +P + FR+N AS T +
Sbjct: 136 SVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQP--FRINWASFSTGEK 193
Query: 71 ANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGN 129
+++ + SV+VGDLSPDV D L+ F+ +Y S+K+AKV++D N+G +KGYGFVRFG+
Sbjct: 194 RAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGD 253
Query: 130 EDEQRNALYAMNG-YCGLGTKPLKICTAVPK 159
E+E+ AL MNG YC + +++ A PK
Sbjct: 254 ENERSRALTEMNGAYC--SNRQMRVGIATPK 282
Score = 34.3 bits (75), Expect = 0.092
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+++VG + PDV D L + F S++ + + K+ + KG GFV+F + +A+ +
Sbjct: 322 TIFVGGIDPDVIDEDLRQPF-SQFGEVVSVKIPVG-----KGCGFVQFADRKSAEDAIES 375
Query: 140 MNG 142
+NG
Sbjct: 376 LNG 378
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRF 127
++WVGDL +D+ L+ F S + + KVI + + ++GYGFV F
Sbjct: 109 TLWVGDLLHWMDETYLHSCF-SHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 117 bits (282), Expect = 8e-27
Identities = 67/155 (43%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++VKV+RNK G GY FV F++ + A + + NG +P T FRLN AS T
Sbjct: 130 VSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQP--FRLNWASFSTGE 187
Query: 72 NMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFG 128
+ S++VGDLSPDV D L+ F+ KY S+K AKV+LD N+G +KGYGFVRFG
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 247
Query: 129 NEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 163
+E+E+ A+ MNG ++ ++I A P+ K+N
Sbjct: 248 DENERTKAMTEMNG-VKCSSRAMRIGPATPR-KTN 280
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
++WVGDL +D+ L FAS I + KVI + N+G ++GYGFV F + D L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 138 YAMNG 142
NG
Sbjct: 162 REFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 117 bits (282), Expect = 8e-27
Identities = 67/155 (43%), Positives = 95/155 (61%), Gaps = 7/155 (4%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++VKV+RNK G GY FV F++ + A + + NG +P T FRLN AS T
Sbjct: 130 VSVKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQP--FRLNWASFSTGE 187
Query: 72 NMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFG 128
+ S++VGDLSPDV D L+ F+ KY S+K AKV+LD N+G +KGYGFVRFG
Sbjct: 188 KRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFG 247
Query: 129 NEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 163
+E+E+ A+ MNG ++ ++I A P+ K+N
Sbjct: 248 DENERTKAMTEMNG-VKCSSRAMRIGPATPR-KTN 280
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
++WVGDL +D+ L FAS I + KVI + N+G ++GYGFV F + D L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 138 YAMNG 142
NG
Sbjct: 162 REFNG 166
Score = 37.5 bits (83), Expect = 0.010
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTF----PVVRFRLNTASRE 68
A KV+ + TG GY FV F + E AM ++NG P + N ++
Sbjct: 226 AAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ 285
Query: 69 -------TRANMQHE-REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK 120
T + + +++VG L V D L + F +++ I + K+ + K
Sbjct: 286 GGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPF-NEFGEIVSVKIPVG-----K 339
Query: 121 GYGFVRFGNEDEQRNALYAMNG 142
G GFV+F N AL +NG
Sbjct: 340 GCGFVQFVNRPNAEEALEKLNG 361
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 114 bits (274), Expect = 7e-26
Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 5/161 (3%)
Query: 1 MAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
M+ F + G+ A KV+RNK TG+ GY F+ F + A + NG P+P T R
Sbjct: 77 MSVFAQSGEATSA-KVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRL 135
Query: 61 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYT 119
A + + +++VGDL+P+V DY L F + Y S+K AKV+LD +G +
Sbjct: 136 NWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRS 195
Query: 120 KGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPK 159
KGYGFVRF +E+EQ A+ MNG YC T+P++I A K
Sbjct: 196 KGYGFVRFADENEQMRAMTEMNGQYC--STRPMRIGPAANK 234
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
S+W+GDL +D+ + VFA + +AKVI + +G ++GYGF+ F + L
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEAT-SAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119
Query: 139 AMNG 142
NG
Sbjct: 120 TYNG 123
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 112 bits (270), Expect = 2e-25
Identities = 64/151 (42%), Positives = 92/151 (60%), Gaps = 8/151 (5%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
+VKV+RNK T + GY FV F + A +A+ +G +P FRLN AS T
Sbjct: 147 SVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQP--FRLNWASFSTGEK 204
Query: 73 MQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGN 129
E + S++VGDL+PDV D L FA +Y S+K AKV++D N+G +KGYGFVRFG+
Sbjct: 205 RASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGD 264
Query: 130 EDEQRNALYAMNG-YCGLGTKPLKICTAVPK 159
E+E+ A+ MNG +C ++ +++ A PK
Sbjct: 265 ENERSRAMTEMNGAFC--SSRQMRVGIATPK 293
Score = 35.9 bits (79), Expect = 0.030
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 138
++WVGDL +D+ L+ F S + + KVI + + ++GYGFV F + AL
Sbjct: 120 TLWVGDLLHWMDETYLHTCF-SHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQ 178
Query: 139 AMNG 142
+ +G
Sbjct: 179 SFSG 182
Score = 31.9 bits (69), Expect = 0.49
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 29/149 (19%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
KV+ + TG GY FV F + E AM ++NG +R + T R Q
Sbjct: 244 KVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSR--QMRVGIATPKRAAAYGQQ 301
Query: 75 H---------------------EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 113
+ +++VG L DV + L + F S + + + K+ +
Sbjct: 302 NGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPF-SDFGEVVSVKIPV 360
Query: 114 DNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
KG GFV+F N A+ +NG
Sbjct: 361 G-----KGCGFVQFANRQSAEEAIGNLNG 384
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 103 bits (248), Expect = 1e-22
Identities = 66/162 (40%), Positives = 88/162 (54%), Gaps = 8/162 (4%)
Query: 1 MAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
M F G+ A KV+RNK G GY F+ F A + NG P+P + F
Sbjct: 97 MNVFGLTGEAT-AAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQA--F 153
Query: 61 RLNTASRETRANMQHER-EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGY 118
RLN A Q E E +V+VGDL+PDV D+ L F + Y+S+K AKV+ D +G
Sbjct: 154 RLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGR 213
Query: 119 TKGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPK 159
+KGYGFVRF +E EQ A+ MNG YC ++P++ A K
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYC--SSRPMRTGPAANK 253
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN--SGYTKGYGFVRFGNEDEQRNAL 137
S+W+GDL P +D+ L VF T TA ++ N +GY++GYGF+ F N L
Sbjct: 81 SLWIGDLQPWMDENYLMNVFG--LTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 138 YAMNG 142
NG
Sbjct: 139 QTYNG 143
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 71.3 bits (167), Expect = 7e-13
Identities = 43/129 (33%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
+V+ N+ T + G+ FV T EEA A+ K N + G V SR R
Sbjct: 143 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRV 202
Query: 75 HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQ 133
++ F ++VG+L DVD L R+F S++ + A+V+ D +G ++G+GFV+ NE+E
Sbjct: 203 YDAAFRIYVGNLPWDVDSGRLERLF-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 261
Query: 134 RNALYAMNG 142
A+ A++G
Sbjct: 262 NVAIAALDG 270
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 136
E ++VG+L DVD +L +F T ++ ++VI + ++ ++G+GFV +E A
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGT-VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 137 LYAMNGYCGLGTKPLKICTAVPK 159
+ N + + + L + A P+
Sbjct: 171 VEKFNSF-EVNGRRLTVNRAAPR 192
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 71.3 bits (167), Expect = 7e-13
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 7/120 (5%)
Query: 24 EPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWV 83
+ + Y FVH+ A A+ LNG+ + G V + T RE ++ F+++V
Sbjct: 94 DKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQREDTSS-----HFNIFV 148
Query: 84 GDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYAMNG 142
GDLSP+V D +LY+ F S ++S A+V+ D +G ++G+GFV F N+ + + A+ MNG
Sbjct: 149 GDLSPEVTDATLYQSF-SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 207
Score = 33.9 bits (74), Expect = 0.12
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 64 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVF-ASKYTSIKTAKVILDNSGYTKGY 122
T + ET N + + +V+VG+L+P+V L+R F A I+ +V D KG+
Sbjct: 252 TLNEETPEN--NSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-----KGF 304
Query: 123 GFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
GFVR+ E A+ N L + +K C+ KP
Sbjct: 305 GFVRYNTHPEAALAIQMGNTQPYLFNRQIK-CSWGNKP 341
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK 49
+VM ++ TG G+ FV F+ ++A A++++NGK
Sbjct: 174 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 208
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 70.9 bits (166), Expect = 9e-13
Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 4/158 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F + G +A +V+ N+ T + G+ FV + +EA A+ K N + G V
Sbjct: 170 FEQAGTVEIA-EVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 228
Query: 64 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGY 122
SR RA +E F V+VG+L DVD+ L ++F S++ + A+V+ D +G ++G+
Sbjct: 229 RGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGF 287
Query: 123 GFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
GFV + DE A+ A++G L + +++ A +P
Sbjct: 288 GFVTMSDVDELNEAISALDGQ-NLEGRAIRVNVAEERP 324
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
E ++VG+L+ DV+ +L +F T ++ A+VI + + ++G+GFV + DE A
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGT-VEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 137 LYAMNGYCGLGTKPLKICTAVPK 159
+ N Y L + L + A P+
Sbjct: 208 VEKFNRY-DLNGRLLTVNKAAPR 229
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 70.5 bits (165), Expect = 1e-12
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++V+V R+ T GY +V++ ++A AM KLN + G R+ +SR++ A
Sbjct: 73 VSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKM----IRITYSSRDSSA 128
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
+ +++V +L VD+ +L+ F+ T I + KV D+ G ++GYGFV+F ED
Sbjct: 129 --RRSGVGNLFVKNLDKSVDNKTLHEAFSGCGT-IVSCKVATDHMGQSRGYGFVQFDTED 185
Query: 132 EQRNALYAMNG 142
+NA+ +NG
Sbjct: 186 SAKNAIEKLNG 196
Score = 66.5 bits (155), Expect = 2e-11
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G+ GY FV F T++ A +A+ KLNGK + V L RE+ A+ + +V+
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKM--KFTNVY 228
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
V +LS D L F +Y SI +A V+ D G ++ +GFV F N ++ A+ A+NG
Sbjct: 229 VKNLSEATTDDELKTTFG-QYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Score = 59.3 bits (137), Expect = 3e-09
Identities = 53/166 (31%), Positives = 78/166 (46%), Gaps = 14/166 (8%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F + G AV VMR+ G+ + FV+F+ E+A A+ LNGK V
Sbjct: 245 FGQYGSISSAV-VMRDG-DGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQK 302
Query: 64 TASRETRANMQHEREFS----------VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 113
+ RE + ++E+ S ++V +L V D L +FA ++ +I + KV+
Sbjct: 303 KSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFA-EFGTITSCKVMR 361
Query: 114 DNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
D SG +KG GFV F E L MNG +G KPL + A K
Sbjct: 362 DPSGTSKGSGFVAFSAASEASRVLNEMNGKM-VGGKPLYVALAQRK 406
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK-GYGFVRFGNEDEQRNALY 138
S++VGDL +V D LY F ++ + + +V D + T GYG+V + N D+ A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYF-TEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 139 AMNGYCGLGTKPLKI 153
+N Y L K ++I
Sbjct: 106 KLN-YSYLNGKMIRI 119
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 68.9 bits (161), Expect = 4e-12
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F + G AV VMR++ +G + FV+F+ E A A+ K+NG + V
Sbjct: 249 FGKFGVISSAV-VMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQK 306
Query: 64 TASRETRANMQHERE----------FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 113
+ RE + E+E ++++ +L VDD L +F S+Y ++ ++KV+L
Sbjct: 307 KSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMF-SEYGNVTSSKVML 365
Query: 114 DNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+ G ++G+GFV + N +E AL MNG +G KPL I A K
Sbjct: 366 NPQGMSRGFGFVAYSNPEEALRALSEMNGKM-IGRKPLYIALAQRK 410
Score = 62.5 bits (145), Expect = 3e-10
Identities = 38/131 (29%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++V+V R++ GYA+++F +A AM LN P+ +R L+ TR
Sbjct: 76 VSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAMEALNYTPLFDR--PIRIMLSNRDPSTRL 132
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
+ + ++++ +L +D+ +L+ F+S + +I + KV +D +G +KGYGFV+F E+
Sbjct: 133 SGKG----NIFIKNLDASIDNKALFETFSS-FGTILSCKVAMDVTGRSKGYGFVQFEKEE 187
Query: 132 EQRNALYAMNG 142
+ A+ +NG
Sbjct: 188 SAQAAIDKLNG 198
Score = 59.3 bits (137), Expect = 3e-09
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 22 TGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSV 81
TG GY FV F+ +E A A+ KLNG + V + R N R +V
Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNV 231
Query: 82 WVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMN 141
+V +L ++ + L + F K+ I +A V+ D SG ++ +GFV F + +A+ MN
Sbjct: 232 YVKNLPKEIGEDELRKTF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 142 GYCGLGTKPLKICTAVPK 159
G LG L + A K
Sbjct: 291 G-ISLGDDVLYVGRAQKK 307
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
S++ GDL P V + L+ +F ++ + +V D + + GY ++ F N ++ A+ A
Sbjct: 50 SLYAGDLDPKVTEAHLFDLF-KHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 140 MNGYCGLGTKPLKICTAVPKPKSNL 164
+N Y L +P++I + P + L
Sbjct: 109 LN-YTPLFDRPIRIMLSNRDPSTRL 132
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 68.1 bits (159), Expect = 6e-12
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 24 EPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWV 83
+ + Y FVH+ A A+ LNG+ I G V + T RE ++ F+++V
Sbjct: 98 DKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSS-----HFNIFV 152
Query: 84 GDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 142
GDLSP+V D +L+ F S + S A+V+ D +G ++G+GFV F N+ + + A+ MNG
Sbjct: 153 GDLSPEVTDAALFDSF-SAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 211
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTS-IKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 138
+V+VG+LSP+V L+R+F + I+ +V D KG+GFVR+ DE A+
Sbjct: 270 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQ 324
Query: 139 AMNGYCGLGTKPLKICTAVPKP 160
N L ++ ++ C+ KP
Sbjct: 325 MGNAQPFLFSRQIR-CSWGNKP 345
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK 49
+VM ++ TG G+ FV F+ ++A A++++NGK
Sbjct: 178 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 212
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 67.3 bits (157), Expect = 1e-11
Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 10/150 (6%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
L+ KV+ G+ G+ FV F T++ A+ A L+G + G V +N R A
Sbjct: 139 LSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMA 196
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
Q +V+V +L V D L+ +F S+Y ++ + V+ D G ++G+GFV F N +
Sbjct: 197 GNQDST--NVYVKNLIETVTDDCLHTLF-SQYGTVSSVVVMRDGMGRSRGFGFVNFCNPE 253
Query: 132 EQRNALYAMNGYCG--LGTKPLKICTAVPK 159
NA AM CG LG+K L + A+ K
Sbjct: 254 ---NAKKAMESLCGLQLGSKKLFVGKALKK 280
Score = 57.2 bits (132), Expect = 1e-08
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++V + RN TG+ YA+++F + A +AM +LN + G R+ + R+
Sbjct: 48 VSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRLNHSDLKGK----AMRIMWSQRDLAY 103
Query: 72 NMQHEREF-SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
+ F +++V +L + L R+F + SI + KV+ +N G +KG+GFV+F E
Sbjct: 104 RRRTRTGFANLYVKNLDSSITSSCLERMFC-PFGSILSCKVVEEN-GQSKGFGFVQFDTE 161
Query: 131 DEQRNALYAMNGYCGLGTK 149
+A A++G G K
Sbjct: 162 QSAVSARSALHGSMVYGKK 180
Score = 53.2 bits (122), Expect = 2e-07
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
+V VMR+ G G+ FV+F E A AM L G + V L R
Sbjct: 230 SVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLK 288
Query: 73 MQHEREF---------SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYG 123
+ F +++V +LS +++ L +F Y I +AKV+ +G +KG+G
Sbjct: 289 QKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGC-YGQIVSAKVMCHENGRSKGFG 347
Query: 124 FVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
FV F N +E + A +NG+ G KP+ + A K
Sbjct: 348 FVCFSNCEESKQAKRYLNGFLVDG-KPIVVRVAERK 382
Score = 37.1 bits (82), Expect = 0.013
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 68 ETRA--NMQHEREF-SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGF 124
ET+A N QH F S++VGDLSPDV + L F+ + +G + Y +
Sbjct: 7 ETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAY 66
Query: 125 VRFGNEDEQRNALYAMNGYCGLGTKPLKI 153
+ F + NA+ +N + L K ++I
Sbjct: 67 INFDSPFSASNAMTRLN-HSDLKGKAMRI 94
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 66.1 bits (154), Expect = 2e-11
Identities = 43/129 (33%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM 73
++V R+ T GYA+V+F E+A AM LN PI +R L+ TR +
Sbjct: 74 LRVCRD-LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDR--PIRIMLSNRDPSTRLSG 130
Query: 74 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 133
+ +V++ +L +D+ +LY F+S + +I + KV +D G +KGYGFV+F E+
Sbjct: 131 KG----NVFIKNLDASIDNKALYETFSS-FGTILSCKVAMDVVGRSKGYGFVQFEKEETA 185
Query: 134 RNALYAMNG 142
+ A+ +NG
Sbjct: 186 QAAIDKLNG 194
Score = 62.5 bits (145), Expect = 3e-10
Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F + G AV VM+++ +G + FV+F + E A A+ K+NG + V
Sbjct: 245 FGKYGDISSAV-VMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQK 302
Query: 64 TASRETRANMQHERE----------FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 113
+ RE + E+E ++++ +L V+D L +F S+Y ++ + KV++
Sbjct: 303 KSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMF-SEYGNVTSCKVMM 361
Query: 114 DNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
++ G ++G+GFV + N +E A+ MNG +G KPL + A K
Sbjct: 362 NSQGLSRGFGFVAYSNPEEALLAMKEMNGKM-IGRKPLYVALAQRK 406
Score = 46.8 bits (106), Expect = 2e-05
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 52 PGTFPVVRFRLNTASRETRAN-MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAK 110
P FP V A+ A +Q S++VGDL P V++ L +F ++ + +
Sbjct: 17 PPPFPAVSQVAAVAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLF-NQVAPVHNLR 75
Query: 111 VILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 164
V D + + GY +V F N ++ A+ ++N Y + +P++I + P + L
Sbjct: 76 VCRDLTHRSLGYAYVNFANPEDASRAMESLN-YAPIRDRPIRIMLSNRDPSTRL 128
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 64.1 bits (149), Expect = 1e-10
Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRL 62
AF + GQ ++V+V R+ T GY +V++ T ++A A+++LN + G V + +
Sbjct: 64 AFTQAGQ-VVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSV 122
Query: 63 NTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 122
S ++ ++++ +L +D +L+ F S + I + KV +D SG +KGY
Sbjct: 123 RDPS------LRKSGVGNIFIKNLDKSIDHKALHETF-SAFGPILSCKVAVDPSGQSKGY 175
Query: 123 GFVRFGNEDEQRNALYAMNG 142
GFV++ ++ + A+ +NG
Sbjct: 176 GFVQYDTDEAAQGAIDKLNG 195
Score = 62.9 bits (146), Expect = 2e-10
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 22 TGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSV 81
+G+ GY FV + TDE A A+ KLNG + V ++ R+ + + +V
Sbjct: 169 SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSG--EKVKFTNV 226
Query: 82 WVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL-DNSGYTKGYGFVRFGNEDEQRNALYAM 140
+V +LS + D L +VF + T+ VI+ D G +KG+GFV F N D+ A+ A+
Sbjct: 227 YVKNLSESLSDEELNKVFGE--FGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 141 NG 142
NG
Sbjct: 285 NG 286
Score = 60.5 bits (140), Expect = 1e-09
Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREF--- 79
G+ G+ FV+F+ ++A A+ LNGK V + RET + E+
Sbjct: 261 GKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEA 320
Query: 80 -------SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 132
+++V +L V D L FA + +I + KV+ D SG ++G GFV F +E
Sbjct: 321 ADKSQGSNLYVKNLDESVTDDKLREHFAP-FGTITSCKVMRDPSGVSRGSGFVAFSTPEE 379
Query: 133 QRNALYAMNGYCGLGTKPLKICTAVPK 159
A+ MNG + TKPL + A K
Sbjct: 380 ATRAITEMNGKM-IVTKPLYVALAQRK 405
Score = 36.3 bits (80), Expect = 0.023
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 5/115 (4%)
Query: 48 GKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVF--ASKYTS 105
G +PG + A + S++VGDL V D L+ F A + S
Sbjct: 14 GVAVPGAAAAEAAAAAAGAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVS 73
Query: 106 IKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
++ + + + + GYG+V + + AL +N + L + +++ +V P
Sbjct: 74 VRVCRDM--TTRRSLGYGYVNYATPQDASRALNELN-FMALNGRAIRVMYSVRDP 125
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
KVMR+ +G G FV F T EEA A+ ++NGK I
Sbjct: 357 KVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 62.9 bits (146), Expect = 2e-10
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRL 62
AF G+ AV VM++ G+ G+ FV+F+ ++A A+ LNG V
Sbjct: 48 AFGEYGKITSAV-VMKDG-EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 105
Query: 63 NTASRETRANMQHEREF----------SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVI 112
+ RET +++E+ +++V +L P + D L +F S + ++ ++KV+
Sbjct: 106 KKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIF-SPFGTVTSSKVM 164
Query: 113 LDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
D +G +KG GFV F +E A+ ++G + +KPL + A K
Sbjct: 165 RDPNGTSKGSGFVAFATPEEATEAMSQLSGKM-IESKPLYVAIAQRK 210
Score = 48.0 bits (109), Expect = 7e-06
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 67 RETRANMQHEREFS-VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFV 125
R+ R + ++ +F+ V+V +L+ D L F +Y I +A V+ D G +KG+GFV
Sbjct: 16 RQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFG-EYGKITSAVVMKDGEGKSKGFGFV 74
Query: 126 RFGNEDEQRNALYAMNGY 143
F N D+ A+ ++NG+
Sbjct: 75 NFENADDAARAVESLNGH 92
Score = 34.3 bits (75), Expect = 0.092
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
KVMR+ G G FV F T EEA +AM +L+GK I V R R Q
Sbjct: 162 KVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQ 220
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 62.9 bits (146), Expect = 2e-10
Identities = 41/123 (33%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Query: 24 EPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWV 83
+ + Y FVH+ A A+ LNG+ I G V + T RE ++ F+++V
Sbjct: 98 DKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSS-----HFNIFV 152
Query: 84 GDLSPDVDDYSLYRVFA---SKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
GDLSP+V D +L+ F+ S + + A+V+ D +G ++G+GFV F N+ + + A+
Sbjct: 153 GDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 212
Query: 140 MNG 142
MNG
Sbjct: 213 MNG 215
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTS-IKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 138
+V+VG+LSP+V L+R+F + I+ +V D KG+GFVR+ DE A+
Sbjct: 274 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD-----KGFGFVRYNTHDEAALAIQ 328
Query: 139 AMNGYCGLGTKPLKICTAVPKP 160
N L ++ ++ C+ KP
Sbjct: 329 MGNAQPFLFSRQIR-CSWGNKP 349
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK 49
+AFN +VM ++ TG G+ FV F+ ++A A++++NGK
Sbjct: 169 SAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGK 216
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 62.5 bits (145), Expect = 3e-10
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 24 EPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWV 83
E + Y FVH+ A A+ LNG+ + G V + + RE ++ F+++V
Sbjct: 89 EKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWAYASGQREDTSS-----HFNIFV 143
Query: 84 GDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYAMNG 142
GDLSP+V D L+ F S Y + A+V+ D +G ++G+GFV F N+ + + A+ + G
Sbjct: 144 GDLSPEVTDAMLFTCF-SVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITG 202
Query: 143 YCGLGTKPLK 152
LG++ ++
Sbjct: 203 K-WLGSRQIR 211
Score = 35.9 bits (79), Expect = 0.030
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTS-IKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 138
+V+VG+L+P+V L+R F S I+ +V D KG+GFVR+ E A+
Sbjct: 261 TVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHVEAALAIQ 315
Query: 139 AMNGYCGLGTKPLKICTAVPKP 160
N + L + +K C+ KP
Sbjct: 316 MGNTHSYLSGRQMK-CSWGSKP 336
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK 49
+VM ++ TG G+ FV F+ ++A A+ ++ GK
Sbjct: 169 RVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGK 203
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 60.5 bits (140), Expect = 1e-09
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGT-FPVVRFRL 62
F G+ AV VM++ G+ + FV+F+ E A+ A+ K+NG + V R +
Sbjct: 139 FGEFGEITSAV-VMKDG-EGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQR 196
Query: 63 NT-ASRETRA---------NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVI 112
T + + +A +M+ + +++V +L VD+ L +F S++ +I + KV+
Sbjct: 197 KTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELF-SEFGTITSCKVM 255
Query: 113 LDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 164
+ ++G +KG GFV F +E A+ MNG +G KP+ + A K + L
Sbjct: 256 VHSNGISKGVGFVEFSTSEEASKAMLKMNGKM-VGNKPIYVSLAQCKEQHKL 306
Score = 45.2 bits (102), Expect = 5e-05
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F+ G + L+ KV R+ +G GY FV F +D A + NG I ++
Sbjct: 51 FSAFG-KVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQ------HIH 102
Query: 64 TASRETRANMQHEREFS-VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 122
+R R F+ V+V +L D L R+F ++ I +A V+ D G ++ +
Sbjct: 103 VCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFG-EFGEITSAVVMKDGEGKSRRF 161
Query: 123 GFVRFGNEDEQRNALYAMNG 142
GFV F + A+ MNG
Sbjct: 162 GFVNFEKAEAAVTAIEKMNG 181
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+V+V +L +D+ L +F S + + + KV D SG +KGYGFV+F ++ A
Sbjct: 32 NVFVKNLDESIDNKQLCDMF-SAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNF 90
Query: 140 MNG 142
NG
Sbjct: 91 HNG 93
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 11 PLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETR 70
P V+V+ N+ TG+ G+AFV E+ + L+G G V F + +
Sbjct: 111 PELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA--DKPKPNK 168
Query: 71 ANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGN 129
+ E E ++VG+LS V SL F + + A+V+ D ++G ++GYGFV + +
Sbjct: 169 EPLYPETEHKLFVGNLSWTVTSESLAGAFR-ECGDVVGARVVFDGDTGRSRGYGFVCYSS 227
Query: 130 EDEQRNALYAMNGY 143
+ E AL +++G+
Sbjct: 228 KAEMETALESLDGF 241
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 54.8 bits (126), Expect = 6e-08
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 134
E ++ ++ GDL +V+D L + FA ++ + AKVI D +G TKGYGFV F N +
Sbjct: 134 ENDYRLFCGDLGNEVNDDVLSKAFA-RFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLA 192
Query: 135 NALYAMNGYCGLGTKPLKI 153
AL MNG +G +P+K+
Sbjct: 193 AALKEMNGKY-VGNRPIKL 210
Score = 35.1 bits (77), Expect = 0.053
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPV 57
KV+R+K TG+ GY FV F + A+ ++NGK + G P+
Sbjct: 167 KVIRDKRTGKTKGYGFVSFLNPADLAAALKEMNGKYV-GNRPI 208
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 53.6 bits (123), Expect = 1e-07
Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK-PIPGTFPVVRFRLNTASRETR 70
L V ++++K TG+ G FV + T ++A A+ L+ + +PG V+ R RE
Sbjct: 147 LEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERI 206
Query: 71 ANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
+ EF ++VG L+ + + +F ++ ++ ++ D ++G GFV++ ++
Sbjct: 207 GTL----EFKLFVGSLNKQATEKEVEEIFL-QFGHVEDVYLMRDEYRQSRGCGFVKYSSK 261
Query: 131 DEQRNALYAMNG-YCGLG-TKPLKICTAVPK-PK 161
+ A+ +NG Y G +PL + A PK PK
Sbjct: 262 ETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 295
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 53.6 bits (123), Expect = 1e-07
Identities = 41/154 (26%), Positives = 78/154 (50%), Gaps = 9/154 (5%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK-PIPGTFPVVRFRLNTASRETR 70
L V ++++K TG+ G FV + T ++A A+ L+ + +PG V+ R RE
Sbjct: 147 LEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERI 206
Query: 71 ANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
+ EF ++VG L+ + + +F ++ ++ ++ D ++G GFV++ ++
Sbjct: 207 GTL----EFKLFVGSLNKQATEKEVEEIFL-QFGHVEDVYLMRDEYRQSRGCGFVKYSSK 261
Query: 131 DEQRNALYAMNG-YCGLG-TKPLKICTAVPK-PK 161
+ A+ +NG Y G +PL + A PK PK
Sbjct: 262 ETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 295
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/130 (26%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM 73
V V +++ T Y F+ ++++E+A A+ LN + G P+ R+N AS++ ++
Sbjct: 54 VYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGK-PI---RVNKASQDKKSL- 108
Query: 74 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDE 132
+ ++++G+L PDVD+ LY F++ K++ D ++G ++G+GF+ + + +
Sbjct: 109 --DVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEA 166
Query: 133 QRNALYAMNG 142
A+ +M G
Sbjct: 167 SDAAIESMTG 176
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFR 61
+AF + P K+MR+ TG G+ F+ + + E + A+ + G+ + V +
Sbjct: 133 SAFGVIASNP---KIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 62 LNTASRETRANMQHER 77
++ R ER
Sbjct: 190 YKKDTKGERHGTPAER 205
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 66 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGF 124
S T+ + E ++++G L P ++D L +F+S + I AKVI D +G +KGYGF
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGF 525
Query: 125 VRFGNEDEQRNALYAMNGYCGLG-TKPLKICTAVPKP 160
V++ + A+ AMNGY G T ++I P P
Sbjct: 526 VKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPP 562
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVR 59
F+ G+ +A KV++++ TG GY FV + + A A+ +NG G VR
Sbjct: 500 FSSFGEIVMA-KVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVR 554
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 52.8 bits (121), Expect = 2e-07
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 66 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGF 124
S T+ + E ++++G L P ++D L +F+S + I AKVI D +G +KGYGF
Sbjct: 467 STPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGF 525
Query: 125 VRFGNEDEQRNALYAMNGYCGLG-TKPLKICTAVPKP 160
V++ + A+ AMNGY G T ++I P P
Sbjct: 526 VKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPP 562
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVR 59
F+ G+ +A KV++++ TG GY FV + + A A+ +NG G VR
Sbjct: 500 FSSFGEIVMA-KVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVR 554
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
+++G LSP D++SL F+S + + A+V+ + +G ++GYGFV F +ED +A+ A
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSS-FNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 140 MNG 142
MNG
Sbjct: 92 MNG 94
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
+VM NK TG GY FV+F +++ A A+ +NG+ + G
Sbjct: 61 RVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNG 99
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 50.4 bits (115), Expect = 1e-06
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 6/147 (4%)
Query: 18 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK-PIPGTFPVVRFRLNTASRETR--ANMQ 74
++K TGE A Y F+ ++ EE A+ L + PG V+ R A RE A +Q
Sbjct: 143 KDKMTGERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQ 202
Query: 75 HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQR 134
++V L+ + VF S+Y I+ + LD+ +GY FV+F ++
Sbjct: 203 LPDNPKLYVRCLNKQTTKMEVNEVF-SRYGIIEDIYMALDDMKICRGYAFVQFSCKEMAL 261
Query: 135 NALYAMNGYCGL--GTKPLKICTAVPK 159
A+ A+NG + +PL + A PK
Sbjct: 262 AAIKALNGLFTIRGSDQPLIVRFADPK 288
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 50.0 bits (114), Expect = 2e-06
Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG-----TFPVV-RFRLNTASR 67
V+++ +K T G+ FV + EEA +AM N I G FP V R N R
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMR 204
Query: 68 -ETRANMQH--EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYG 123
+ R N + + V+ G+L ++ L F + + AKVI + N+G ++G+G
Sbjct: 205 TKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFG 263
Query: 124 FVRFGNEDEQRNALYAMNG 142
F+ F + + ++AL MNG
Sbjct: 264 FISFESAENVQSALATMNG 282
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 8 GQRP--LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTA 65
G +P L KV+ + TG G+ F+ F++ E A+ +NG + G RLN A
Sbjct: 240 GDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR----ALRLNLA 295
Query: 66 SRETR 70
S +
Sbjct: 296 SEREK 300
Score = 31.5 bits (68), Expect = 0.65
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 68 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRF 127
E + E ++VG+L + L ++F T + V + ++G+GFV
Sbjct: 105 EKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164
Query: 128 GNEDEQRNALYAMNGYCGLGTKPLKI 153
G+ +E + A+ N +G + +K+
Sbjct: 165 GSIEEAKEAMQMFNS-SQIGGRTVKV 189
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
V+VG+LS VDD +L +F S+ + A+VI D +SG +KG+GFV + + E +NA+ +
Sbjct: 206 VYVGNLSWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 140 MNGYCGLGTKPLKICTAVPKP 160
++G L + +++ A +P
Sbjct: 265 LDG-ADLDGRQIRVSEAEARP 284
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
+ ++VG+L +VD L ++F S +++ +VI D +G ++G+GFV + E A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 137 LYAMNGYCGLGTKPLKICTAVPKPK 161
NGY L +PL++ P PK
Sbjct: 149 AQQFNGY-ELDGRPLRVNAGPPPPK 172
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 50.0 bits (114), Expect = 2e-06
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM----HKLNGKPIPGTFPVVR 59
F+ G+ L V VMR K TG P G+ FV F +D ID + H ++ + + + R
Sbjct: 26 FSNFGE-VLQVTVMREKATGRPRGFGFVAF-SDPAVIDRVLQDKHHIDNRDVDVKRAMSR 83
Query: 60 FRLNTASRETRANMQHE-------REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVI 112
+ A R N R ++VG L P + +R + Y + A ++
Sbjct: 84 EEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTS-DEFRAYFETYGPVSDAVIM 142
Query: 113 LDNSGY-TKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+D + +G+GFV F +ED L+ + L K +++ A+PK
Sbjct: 143 IDQTTQRPRGFGFVSFDSEDSVDLVLH--KTFHDLNGKQVEVKRALPK 188
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 48.8 bits (111), Expect = 4e-06
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 7/135 (5%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNT-ASRETRAN 72
V+VM +K++G + F ++ E+A + KLNG + G V AS +
Sbjct: 105 VQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSV 164
Query: 73 MQHERE------FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVR 126
+Q E + V+VG+L+ V L +F+ K + + + + G+GFV
Sbjct: 165 LQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVT 224
Query: 127 FGNEDEQRNALYAMN 141
F +E++ A+ A+N
Sbjct: 225 FSSEEDVEAAIVALN 239
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 48.4 bits (110), Expect = 5e-06
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ----HERE---- 78
GYAFV+F E+A A +NG V A RE Q HE +
Sbjct: 242 GYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIA 301
Query: 79 --FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNA 136
+++V +++ V + L + F S+ +I + K++ D G +KG+GFV F +E +A
Sbjct: 302 KVSNIYVKNVNVAVTEEELRKHF-SQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDA 360
Query: 137 LYAMNGYCGLGTKPLKICTAVPK 159
+ +G G KPL + A K
Sbjct: 361 VKTFHGQMFHG-KPLYVAIAQKK 382
Score = 46.8 bits (106), Expect = 2e-05
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G+ GY FV F+ ++ A A+ LN + + ++T E+ +++
Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADK----EIYVGKFMKKTDRVKPEEKYTNLY 204
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
+ +L DV + L FA ++ I + + D + +GY FV F N ++ R A +NG
Sbjct: 205 MKNLDADVSEDLLREKFA-EFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNG 263
Query: 143 YCGLGTKPLKICTAVPK 159
G+K L + A K
Sbjct: 264 -TKFGSKCLYVGRAQKK 279
Score = 44.8 bits (101), Expect = 7e-05
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
+V++ ++ +G Y + +F + ++A A+ K N + G ++R + + + R N
Sbjct: 52 SVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGK--MIRVMWSVRAPDARRN 109
Query: 73 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 132
+V+V +L V + L +F K+ +I + KV G ++GYGFV+F ED
Sbjct: 110 GVG----NVFVKNLPESVTNAVLQDMF-KKFGNIVSCKVATLEDGKSRGYGFVQFEQEDA 164
Query: 133 QRNALYAMN 141
A+ +N
Sbjct: 165 AHAAIQTLN 173
Score = 35.9 bits (79), Expect = 0.030
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 138
S++VGDL P V + LY FA ++ S+ + ++ D +SG + YG+ F + + A+
Sbjct: 25 SLYVGDLHPSVTEGILYDAFA-EFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 139 AMNGYCGLGTKPLKICTAVPKP 160
N L K +++ +V P
Sbjct: 84 KKNNSL-LNGKMIRVMWSVRAP 104
Score = 31.5 bits (68), Expect = 0.65
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
G+ G+ FV F T EEAIDA+ +G+ G
Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHG 371
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 48.4 bits (110), Expect = 5e-06
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 8/136 (5%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVV----RFRLNT--ASR 67
V+++R K G+ G+AFV + EEA A+ K + + G V RF+ T +
Sbjct: 124 VEIIRQK-DGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPN 182
Query: 68 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVF-ASKYTSIKTAKVILDNSGYTKGYGFVR 126
+ + + ++V +L+ L +F A+ + + V D G + GYGFV
Sbjct: 183 DLPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVS 242
Query: 127 FGNEDEQRNALYAMNG 142
F +E NA+ +NG
Sbjct: 243 FATREEAENAITKLNG 258
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 11 PLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTAS 66
P++ +V+ G +GY FV F T EEA +A+ KLNGK I G ++F L +AS
Sbjct: 221 PVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKFSLRSAS 276
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 47.6 bits (108), Expect = 9e-06
Identities = 41/168 (24%), Positives = 75/168 (44%), Gaps = 17/168 (10%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM----HKLNGKPIPGTFPVVR 59
F G+ A+ VMR+K TG P G+ FV F +D +D + H ++ + + + R
Sbjct: 26 FTNYGEVSQAI-VMRDKLTGRPRGFGFVIF-SDPSVLDRVLQEKHSIDTREVDVKRAMSR 83
Query: 60 FRLNTASRETRANMQ-------HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVI 112
+ R N + + ++VG L P + D +R + Y + ++
Sbjct: 84 EEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE-FRQYFEVYGPVTDVAIM 142
Query: 113 LDN-SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
D + +G+GFV F +ED + L+ + L K +++ A+PK
Sbjct: 143 YDQATNRPRGFGFVSFDSEDAVDSVLH--KTFHDLSGKQVEVKRALPK 188
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 47.6 bits (108), Expect = 9e-06
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 14/164 (8%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHF---QTDEEAIDAMHKLNGKPIPGTFPVVRF 60
F + G+ +V +MR++ TG+P G+ F+ F ++ I+ H +NGK + + +
Sbjct: 39 FGKYGEITDSV-IMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKG 97
Query: 61 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYT 119
S++ + ++VG + V + L FA KY ++ +VI D+ + +
Sbjct: 98 AGGNQSKDIKTK-------KIFVGGIPSTVTEDELKDFFA-KYGNVVEHQVIRDHETNRS 149
Query: 120 KGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 163
+G+GFV F +E E + L + + ++I A PK N
Sbjct: 150 RGFGFVIFDSE-EVVDELLSKGNMIDMADTQVEIKKAEPKKSLN 192
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 134
E E+ +VG L+ +D L R F S++ + +K+I D SG ++G+GFV F +E R
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 135 NALYAMNGYCGLG 147
+A+ MNG G G
Sbjct: 62 DAIEEMNGSGGGG 74
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
K++ ++ +G G+ FV F+ ++ DA+ ++NG
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 47.2 bits (107), Expect = 1e-05
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 20/208 (9%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTD---EEAIDAMHKLNGKPIPGTFPVVRF 60
F + G+ +V +M ++ TG P G+ FV F E+ ++ H ++ + + ++
Sbjct: 86 FGKFGEVVDSV-IMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVIDDRKVD-----LKR 139
Query: 61 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYT 119
L ++T + ++VG L P +++ L F Y I +++ D ++G +
Sbjct: 140 TLPRGDKDTDIKAVSKTR-KIFVGGLPPLLEEDELKNYFC-VYGDIIEHQIMYDHHTGRS 197
Query: 120 KGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNLXXXXXXXXXXXXXXX 179
+G+GFV F ED + L++ LG K ++I A PK
Sbjct: 198 RGFGFVTFQTEDSV-DRLFSDGKVHELGDKQVEIKRAEPK------RTGRDNSFRSYGAS 250
Query: 180 XXXDYNQYYDPSAYWQNYSAWSGYYGQG 207
D Y A ++YS +SGY G G
Sbjct: 251 GKYDQEDSYSGKAN-EDYSMYSGYGGYG 277
Score = 33.5 bits (73), Expect = 0.16
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAM------HKLNGKPIP-GTFPVVRFRLNTASR 67
++M + TG G+ FV FQT E+++D + H+L K + R + + R
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQT-EDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDNSFR 245
Query: 68 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS--GYTKGYGFV 125
A+ ++++E S + G + D YS Y + Y + ++ GY GYG+
Sbjct: 246 SYGASGKYDQEDS-YSGKANEDYSMYSGYGGYGG-YGAYAGNSMVNPAGFYGYGGGYGY- 302
Query: 126 RFGNEDEQRNALYAMNGYCGLGT 148
+G + N Y GY +G+
Sbjct: 303 GYGYGGQMFNMGYGAGGYSHMGS 325
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
++VG+LS VDD +L +F ++ + A+VI D +SG +KG+GFV + E + A+ +
Sbjct: 251 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 140 MNGYCGLGTKPLKICTAVPKP 160
+NG L + +++ A +P
Sbjct: 310 LNG-ADLDGRQIRVSEAEARP 329
Score = 44.4 bits (100), Expect = 9e-05
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
+ ++VG+LS +VD L ++F S +++ +VI D +G ++G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 137 LYAMNGYCGLGTKPLKICTAVPKPK 161
NGY G +PL++ P PK
Sbjct: 157 AQQFNGYEFEG-RPLRVNAGPPPPK 180
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V+V+ +K TG G+ FV T E A + NG G
Sbjct: 128 VEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEG 167
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
++VG+LS VDD +L +F ++ + A+VI D +SG +KG+GFV + E + A+ +
Sbjct: 259 LYVGNLSWGVDDMALENLF-NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 140 MNGYCGLGTKPLKICTAVPKP 160
+NG L + +++ A +P
Sbjct: 318 LNG-ADLDGRQIRVSEAEARP 337
Score = 44.4 bits (100), Expect = 9e-05
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
+ ++VG+LS +VD L ++F S +++ +VI D +G ++G+GFV E A
Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 137 LYAMNGYCGLGTKPLKICTAVPKPK 161
NGY G +PL++ P PK
Sbjct: 157 AQQFNGYEFEG-RPLRVNAGPPPPK 180
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V+V+ +K TG G+ FV T E A + NG G
Sbjct: 128 VEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEG 167
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 134
+ E+ +VG L+ D+ S+ R F +++ + +K+I+D +G +KG+ FV F +ED R
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCF-NEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMR 99
Query: 135 NALYAMNG 142
A+ MNG
Sbjct: 100 TAIDRMNG 107
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
FN G+ K++ ++ TG G+ FV F+ ++ A+ ++NG+ + G
Sbjct: 64 FNEFGE-VFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDG 112
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 46.0 bits (104), Expect = 3e-05
Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 10/162 (6%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F + G+ +V +M+++ TG+P G+ FV + D +D + + N I + R
Sbjct: 62 FGKYGEITDSV-IMKDRKTGQPRGFGFVTY-ADSSVVDKVIQDNHIIIGKQVEIKR---- 115
Query: 64 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGY 122
T R + ++ + + ++VG + VDD ++ F ++ +K +++ D+S G ++G+
Sbjct: 116 TIPRGSMSSNDFKTK-KIFVGGIPSSVDD-DEFKEFFMQFGELKEHQIMRDHSTGRSRGF 173
Query: 123 GFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 164
GFV + +ED + L A L ++I A PK +++
Sbjct: 174 GFVTYESED-MVDHLLAKGNRIELSGTQVEIKKAEPKKPNSV 214
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
SV+VG L D+ + ++ RVF S Y S+ T K++ D S K YGFV F N +A+
Sbjct: 8 SVYVGGLPYDITEEAVRRVF-SIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIED 66
Query: 140 MNG 142
M+G
Sbjct: 67 MDG 69
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 134
E E+ +VG L+ +D L R F S++ + +K+I D SG ++G+GFV F +E R
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 135 NALYAMNG 142
+A+ MNG
Sbjct: 62 DAIEEMNG 69
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K++ ++ +G G+ FV F+ ++ DA+ ++NGK + G
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDG 74
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 134
E E+ +VG L+ +D L R F S++ + +K+I D SG ++G+GFV F +E R
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 135 NALYAMNG 142
+A+ MNG
Sbjct: 62 DAIEEMNG 69
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K++ ++ +G G+ FV F+ ++ DA+ ++NGK + G
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDG 74
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 134
E E+ +VG L+ +D L R F S++ + +K+I D SG ++G+GFV F +E R
Sbjct: 3 EVEYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 135 NALYAMNG 142
+A+ MNG
Sbjct: 62 DAIEEMNG 69
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K++ ++ +G G+ FV F+ ++ DA+ ++NGK + G
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDG 74
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
++VG+L ++ + L +VF S + S++ +V D +G KG+GFV+F ++ RNAL +
Sbjct: 287 LYVGNLHINMSEDDLRKVFES-FGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL-NL 344
Query: 141 NGYCGLGTKPLKI 153
NG + + +K+
Sbjct: 345 NGQLEIAGRAIKV 357
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 65 ASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYG 123
A +T A Q E +++V LS L FA ++ + AKV+ D SGY+KG+G
Sbjct: 42 AESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFA-QFGEVADAKVVTDRVSGYSKGFG 100
Query: 124 FVRFGNEDEQRNALYAMNG 142
FVR+ ++ + M+G
Sbjct: 101 FVRYATLEDSAKGIAGMDG 119
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 73 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 131
M + E+ ++G L+ D L F KY + AKV+LD SG ++G+GF+ F +
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKK 59
Query: 132 EQRNALYAMNG 142
A+ AMNG
Sbjct: 60 AMDEAIAAMNG 70
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
AF + G + KV+ +KF+G G+ F+ F + +A+ +NG + G
Sbjct: 26 AFEKYGHL-VEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDG 75
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
++VG LS DD SL + F S + + A VI D +G ++G+GFV F ED NA+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 140 MNG 142
M+G
Sbjct: 96 MDG 98
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRL 62
AF G+ A V+ ++ TG G+ FV F ++ A +A+ +++GK + G + R+
Sbjct: 54 AFTSFGEVTEAT-VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGR----QIRV 108
Query: 63 NTASRETRA 71
N A+ + A
Sbjct: 109 NLATERSSA 117
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 45.6 bits (103), Expect = 4e-05
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
++VG LS DD SL + F S + + A VI D +G ++G+GFV F ED NA+
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 140 MNG 142
M+G
Sbjct: 96 MDG 98
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRL 62
AF G+ A V+ ++ TG G+ FV F ++ A +A+ +++GK + G + R+
Sbjct: 54 AFTSFGEVTEAT-VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGR----QIRV 108
Query: 63 NTASRETRA 71
N A+ + A
Sbjct: 109 NLATERSSA 117
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 45.6 bits (103), Expect = 4e-05
Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 13/132 (9%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHF---QTDEEAIDAMHKLNGKPIPGTFPVVRF 60
F + G+ +V +MR++ TG+P G+ F+ F ++ I+ H +NGK + + +
Sbjct: 39 FGKYGEITDSV-IMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKG 97
Query: 61 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYT 119
S++ + ++VG + V + L FA KY ++ +VI D+ + +
Sbjct: 98 AGGNQSKDIKTK-------KIFVGGIPSTVTEDELKDFFA-KYGNVVEHQVIRDHETNRS 149
Query: 120 KGYGFVRFGNED 131
+G+GFV F +E+
Sbjct: 150 RGFGFVIFDSEE 161
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 44.8 bits (101), Expect = 7e-05
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
+++G LS VD+ SL F+S + + ++ D SG ++G+GFV F E + +A A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 140 MNGYCGLGTKPLKICTAVPK 159
M+G GL +PL+I A+ +
Sbjct: 102 MDGK-GLLGRPLRISFALER 120
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 44.4 bits (100), Expect = 9e-05
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 12 LAVKVMRNKFTGE--PAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRET 69
L+V ++++K + +GY FV F + E A L G + G ++RF N S +
Sbjct: 599 LSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDGHALILRFCENKRSDKV 658
Query: 70 RANMQHEREFS-VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFG 128
+ ++ + + V +++ + L ++F S + IK+ ++ N G GY FV F
Sbjct: 659 GKDSNKDKPCTKLHVKNIAFEATKRELRQLF-SPFGQIKSMRLPKKNIGQYAGYAFVEFV 717
Query: 129 NEDEQRNALYAM 140
+ E NA A+
Sbjct: 718 TKQEALNAKKAL 729
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 14 VKVMR--NKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRE 68
+K MR K G+ AGYAFV F T +EA++A L G V+ + + S E
Sbjct: 695 IKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRHLVLEWANDDNSME 751
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
E+ +VG L+ DD +L FA +Y + +K+I D +G ++G+GFV F +E ++A
Sbjct: 7 EYRCFVGGLAWATDDRALETAFA-QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 137 LYAMNG 142
+ MNG
Sbjct: 66 IEGMNG 71
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K++ ++ TG G+ FV F+ ++ DA+ +NG+ + G
Sbjct: 38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDG 76
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
E+ +VG L+ DD +L FA +Y + +K+I D +G ++G+GFV F +E ++A
Sbjct: 7 EYRCFVGGLAWATDDRALETAFA-QYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 137 LYAMNG 142
+ MNG
Sbjct: 66 IEGMNG 71
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K++ ++ TG G+ FV F+ ++ DA+ +NG+ + G
Sbjct: 38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDG 76
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 44.4 bits (100), Expect = 9e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 64 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGY 122
TAS +++ ++VG +S D++ L F SKY + AK+I+D +G ++G+
Sbjct: 19 TASSSMLQSIRCMSSSKIFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGF 77
Query: 123 GFVRFGNEDEQRNAL 137
FV F + +E NA+
Sbjct: 78 AFVTFTSTEEASNAM 92
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 6/64 (9%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRL 62
AF++ G+ + K++ ++ TG G+AFV F + EEA +AM +L+G+ + G R R+
Sbjct: 53 AFSKYGE-VVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGR----RIRV 106
Query: 63 NTAS 66
N A+
Sbjct: 107 NYAT 110
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 44.4 bits (100), Expect = 9e-05
Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 29/179 (16%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM---HKLNGKPIPGTFPV--- 57
F+R G AV V + K TG+P G+ FV F D + + A+ H + GKP+ +
Sbjct: 26 FSRYGAVLEAV-VAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILGKPVDVRKAIRKH 84
Query: 58 --------VRF------RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKY 103
++F ++N RE +N R ++VG LS + + ++ + ++
Sbjct: 85 ELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEE-FKSYFERF 143
Query: 104 TSIKTAKVILDNSGYT---KGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+T V++ + G T +G+GFV + +ED + + + L K +++ A+PK
Sbjct: 144 G--RTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE--VVMQSNFHELSDKRVEVKRAIPK 198
Score = 36.3 bits (80), Expect = 0.023
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 73 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 131
M ++R + ++VG ++ + + +L + F S+Y ++ A V + +G +G+GFVRF N+
Sbjct: 1 MDYDR-YKLFVGGIAKETSEEALKQYF-SRYGAVLEAVVAKEKVTGKPRGFGFVRFANDC 58
Query: 132 EQRNALYAMNGYCGLGTKPLKICTAVPK 159
+ AL + G KP+ + A+ K
Sbjct: 59 DVVKALRDTHFILG---KPVDVRKAIRK 83
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
++VG LSP+V D L R F S++ I +++L+ ++G ++G+GF+ F + ++
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 140 MNGYCGLGTKPLKICTAVPK 159
M+G G + + + A PK
Sbjct: 68 MHGR-DFGDRVISVNRAEPK 86
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 44.0 bits (99), Expect = 1e-04
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTD---EEAIDAMHKLNGKPIPGTFPVVRF 60
F+ G+ AV +++++ TG G+ FV F E I H ++G+ + V R
Sbjct: 26 FSSFGEVIEAV-ILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 61 RLNTASRETRANMQHE-----REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD- 114
N +R +++Q R ++VG L V + S ++ + ++ + V+ D
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTE-SDFKTYFEQFGTTTDVVVMYDH 143
Query: 115 NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKS 162
N+ +G+GF+ + +E+ L + + L K +++ AVPK S
Sbjct: 144 NTQRPRGFGFITYDSEEAVEKVL--LKTFHELNGKMVEVKRAVPKELS 189
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 44.0 bits (99), Expect = 1e-04
Identities = 40/168 (23%), Positives = 78/168 (46%), Gaps = 13/168 (7%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTD---EEAIDAMHKLNGKPIPGTFPVVRF 60
F+ G+ AV +++++ TG G+ FV F E I H ++G+ + V R
Sbjct: 26 FSSFGEVIEAV-ILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDGRLVEAKKAVPRD 84
Query: 61 RLNTASRETRANMQHE-----REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD- 114
N +R +++Q R ++VG L V + S ++ + ++ + V+ D
Sbjct: 85 DQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTE-SDFKTYFEQFGTTTDVVVMYDH 143
Query: 115 NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKS 162
N+ +G+GF+ + +E+ L + + L K +++ AVPK S
Sbjct: 144 NTQRPRGFGFITYDSEEAVEKVL--LKTFHELNGKMVEVKRAVPKELS 189
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKL-NGKPIPG-TFPV-VRFRLNTASRETR 70
V +++ K T P G F+ T E+A ++ N K +PG + P+ V++ R
Sbjct: 41 VNIIKEKTTRAPRGCCFLTCPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLDV 100
Query: 71 ANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
+ E ++VG L +V + + +F S+Y +IK +++ + +KG F+++ ++
Sbjct: 101 LDCSCNPEHKLFVGMLPKNVSETEVQSLF-SEYGTIKDLQILRGSLQTSKGCLFLKYESK 159
Query: 131 DEQRNALYAMNG 142
++ A+ A+NG
Sbjct: 160 EQAVAAMEALNG 171
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 138
++++ ++ + +D L F + + +AKV +D + G +K +GF+ + ++ +NA+
Sbjct: 340 NLFIYNIPREFEDQELAATF-QPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
Query: 139 AMNGYCGLGTKPLKI 153
MNG C L K LK+
Sbjct: 399 TMNG-CQLSGKKLKV 412
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F+ GQ VK++ N+ T + GY +V F + E+A A+ +NGK G F +V+F
Sbjct: 97 FSEFGQ-VTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQP 155
Query: 64 TASRETR 70
SR R
Sbjct: 156 GLSRRRR 162
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL-DNSGYTKGYGFVRFGNEDEQRNALY 138
S++V S V + L +VF S++ + K+I + + + GYG+V F ++++ ++A+
Sbjct: 78 SLFVKGFSDSVSEGRLKKVF-SEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 139 AMNG 142
AMNG
Sbjct: 137 AMNG 140
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 3 AFNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
+F R G PL + + RN +TGEP G+ FV ++ E+A +AM ++N K I G
Sbjct: 66 SFERFG--PLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGG 115
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT-KGYGFVRFGNEDEQRNALYA 139
++V LS D SL ++F S + IK A++I D+ KG+GF+ F +ED+ R AL +
Sbjct: 9 LFVSRLSAYTTDQSLRQLF-SPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 140 MNG 142
++G
Sbjct: 68 LDG 70
Score = 35.5 bits (78), Expect = 0.040
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F+ GQ A +++R+ T P G+ F+ F ++++A A+ L+GK + G V N
Sbjct: 27 FSPFGQIKEA-RLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAKN 85
Query: 64 TASRETRANMQHER 77
+ E RA + +
Sbjct: 86 --AEEVRAGINSNK 97
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
E SV V +LS D + L +F + ++ V +D +G ++G+GFV F + ++ + A
Sbjct: 212 ENSVRVTNLSEDTREPDLMELF-HPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270
Query: 137 LYAMNGYCGLGTKPLKICTAVPKP 160
+ +NGY G L++ A P+P
Sbjct: 271 INKLNGY-GYDNLILRVEWATPRP 293
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
V V ++ TG G+ FV+F + E+A A++KLNG
Sbjct: 242 VYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 41.9 bits (94), Expect = 5e-04
Identities = 32/132 (24%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEA---IDAMHKLNGKPIPGTFPVVRFRLNTASRETR 70
V ++++K T G F+ + EEA ++A H N K +PG +++ + E
Sbjct: 47 VNIIKDKITRASRGCCFLLCPSREEADKLVNACH--NKKTLPGANSLLQVKYADGELE-- 102
Query: 71 ANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
++H+ ++VG L +V + + +F SKY +IK +++ +KG F+++ +
Sbjct: 103 -RLEHK----LFVGMLPKNVSEAEVQSLF-SKYGTIKDLQILRGAQQTSKGCAFLKYETK 156
Query: 131 DEQRNALYAMNG 142
++ +A+ ++NG
Sbjct: 157 EQAVSAMESING 168
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGK-PIPG-TFP-VVRFRLNTASRETR 70
G AF+ ++T E+A+ AM +NGK + G T P VV++ R TR
Sbjct: 147 GCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTR 193
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 41.9 bits (94), Expect = 5e-04
Identities = 32/132 (24%), Positives = 69/132 (52%), Gaps = 13/132 (9%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEA---IDAMHKLNGKPIPGTFPVVRFRLNTASRETR 70
V ++++K T G F+ + EEA ++A H N K +PG +++ + E
Sbjct: 47 VNIIKDKITRASRGCCFLLCPSREEADKLVNACH--NKKTLPGANSLLQVKYADGELE-- 102
Query: 71 ANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
++H+ ++VG L +V + + +F SKY +IK +++ +KG F+++ +
Sbjct: 103 -RLEHK----LFVGMLPKNVSEAEVQSLF-SKYGTIKDLQILRGAQQTSKGCAFLKYETK 156
Query: 131 DEQRNALYAMNG 142
++ +A+ ++NG
Sbjct: 157 EQAVSAMESING 168
Score = 36.3 bits (80), Expect = 0.023
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 138
++++ ++ + D L F S + + +AKV +D + G +K +GFV + ++ +NA+
Sbjct: 350 NLFIYNIPREFGDQELAAAFQS-FGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAID 408
Query: 139 AMNGYCGLGTKPLKI 153
MNG LG K LK+
Sbjct: 409 MMNGR-HLGGKKLKV 422
Score = 31.1 bits (67), Expect = 0.86
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGK-PIPG-TFP-VVRFRLNTASRETR 70
G AF+ ++T E+A+ AM +NGK + G T P VV++ R TR
Sbjct: 147 GCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTR 193
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 41.9 bits (94), Expect = 5e-04
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFR 61
AAF G+ + VK++ +K + GYAF+ + T+E A A+ ++NGK I G VV
Sbjct: 300 AAFEGFGEL-VEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNGKIINGWMIVVDVA 358
Query: 62 LNTASRETRA 71
R+ R+
Sbjct: 359 KTKPFRQNRS 368
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 110 KVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 142
K+I+D S +KGY F+ + E+ AL MNG
Sbjct: 312 KIIMDKISKRSKGYAFLEYTTEEAAGTALKEMNG 345
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 41.9 bits (94), Expect = 5e-04
Identities = 31/130 (23%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKL-NGKPIPGTFPVVRFRLNTASRETRAN 72
V +++ K T P G F+ T E+A ++ N K +PG ++ + E
Sbjct: 41 VNIIKEKTTRAPRGCCFLTCPTREDADKVINSFHNKKTLPGASSPLQVKYADGELE---R 97
Query: 73 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 132
++H+ ++VG L +V + + +F S+Y +IK +++ + +KG F+++ ++++
Sbjct: 98 LEHK----LFVGMLPKNVSETEVQSLF-SEYGTIKDLQILRGSLQTSKGCLFLKYESKEQ 152
Query: 133 QRNALYAMNG 142
A+ A+NG
Sbjct: 153 AVAAMEALNG 162
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 138
++++ ++ + +D L F + + +AKV +D + G +K +GF+ + ++ +NA+
Sbjct: 331 NLFIYNIPREFEDQELAATF-QPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
Query: 139 AMNGYCGLGTKPLKI 153
MNG C L K LK+
Sbjct: 390 TMNG-CQLSGKKLKV 403
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
+++G LS DD SL FA + + AKVI+D +G ++G+GFV F +E A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 140 MNG 142
M+G
Sbjct: 96 MDG 98
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
KV+ ++ TG G+ FV+F + A A+ +++GK + G
Sbjct: 65 KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
+++G LS DD SL FA + + AKVI+D +G ++G+GFV F +E A+
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 140 MNG 142
M+G
Sbjct: 96 MDG 98
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
KV+ ++ TG G+ FV+F + A A+ +++GK + G
Sbjct: 65 KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
++VG LSP D L F S + I A V+LD SG ++G+GFV + + + NA+ A
Sbjct: 38 IFVGGLSPSTDVELLKEAFGS-FGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 140 M 140
M
Sbjct: 97 M 97
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
+++G ++ +D+ SL F +KY + +VILD +G ++G+GFV F + + +A+ A
Sbjct: 42 LFIGGMAYSMDEDSLREAF-TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 140 MNG 142
++G
Sbjct: 101 LDG 103
Score = 32.7 bits (71), Expect = 0.28
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
AF + G+ + +V+ ++ TG G+ FV F + E A A+ L+G+ + G V +
Sbjct: 59 AFTKYGE-VVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNY 115
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 40.3 bits (90), Expect = 0.001
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFR--LNTASRET 69
++V+V RN TGE G +V + A A+ L+G + G VR+ +N +R
Sbjct: 135 ISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRN 194
Query: 70 --------RANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTK 120
+ + +E + V+VG+L L F SK+ +I + +V+ D +G +
Sbjct: 195 PEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHF-SKFGTIVSTRVLHDRKTGRNR 253
Query: 121 GYGFVRFGNEDEQRNALYAMNG 142
+ F+ F E+R+A + NG
Sbjct: 254 VFAFLSF-TSGEERDAALSFNG 274
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
+++G LS + L F SK + A++++D S +KG+GFV F + DE + AL
Sbjct: 36 LFIGGLSFCTTEQGLSEAF-SKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 140 MNG 142
NG
Sbjct: 95 FNG 97
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
AF++ GQ + +++ ++ + G+ FV F + +EA A+ + NG+ + G
Sbjct: 53 AFSKCGQ-VVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNG 102
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 39.1 bits (87), Expect = 0.003
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN-TASRETRAN 72
V++M+++ +G+ GYAFV F+T + A A+ +L+ K G +R L+ T +R N
Sbjct: 145 VRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKEFKG--KTIRCSLSETKNRLFIGN 202
Query: 73 MQH---EREFSVWVGDLSPDVDDYSLYR 97
+ E EF + D+ P V++ L +
Sbjct: 203 IPKNWTEDEFRKVIEDVGPGVENIELIK 230
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
V++G L DV + L R + I +++ D +SG +KGY FV F +D + A+
Sbjct: 118 VFIGGLPRDVGEEDL-RDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 136
V+VG L+ + +L R F +Y I A VI D N+G +KGYGFV F + + R A
Sbjct: 26 VFVGGLAWETQSETLRRHF-DQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRA 81
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 89 DVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALYAMNGYCGLG 147
D+D L + + SK+ ++ V+ D S G ++G+G+V F + ++ +NAL G LG
Sbjct: 13 DIDSDGL-KDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL---KGEHFLG 68
Query: 148 TKPLKICTAVPK 159
+ L++ A PK
Sbjct: 69 NRILEVKVATPK 80
Score = 35.1 bits (77), Expect = 0.053
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 11/145 (7%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQH 75
VM+++ TG G+ +V F + E DA + L G+ G ++ ++ T E R
Sbjct: 34 VMKDRSTGRSRGFGYVTFASAE---DAKNALKGEHFLGN-RILEVKVATPKEEMR--QPA 87
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQR 134
++ ++V + V + S +R +Y I + D NS +G GF+ F + D
Sbjct: 88 KKVTRIFVARIPSSVSE-SDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVE 146
Query: 135 NALYAMNGYCGLGTKPLKICTAVPK 159
+ M LG + + A PK
Sbjct: 147 D---LMEDTHDLGGTTVAVDRATPK 168
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 136
E++ +V L D D+ L +F SK+ ++ +K+I D ++G ++ +GFV F E +A
Sbjct: 6 EYTCFVRGLDQDTDEKDLTDIF-SKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
Query: 137 LYAMN 141
+ M+
Sbjct: 65 IMIMD 69
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 136
E ++VG LS DV + L F +Y I ++++ ++G +G+GF+ F + +A
Sbjct: 11 ESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 137 LYAMNGYCGLGTKPLKICTAVPK 159
+ M+G LG K + + A PK
Sbjct: 70 IKHMHGR-ELGNKVISVNKAEPK 91
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
+ F+R G + ++M + TG P G+ F+ F A DA+ ++G+ +
Sbjct: 30 STFDRYG-KITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGREL 78
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.5 bits (83), Expect = 0.010
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 136
E ++VG LS DV + L F +Y I ++++ ++G +G+GF+ F + +A
Sbjct: 11 ESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 137 LYAMNGYCGLGTKPLKICTAVPK 159
+ M+G LG K + + A PK
Sbjct: 70 IKHMHGR-ELGNKVISVNKAEPK 91
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
+ F+R G + ++M + TG P G+ F+ F A DA+ ++G+ +
Sbjct: 30 STFDRYG-KITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGREL 78
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL-DNSGYTKGYGFVRFGNEDEQRNALY 138
S++V S V + L +VF S++ + K+I + + + GYG+V F ++++ ++A+
Sbjct: 59 SLFVKGFSDSVSEGRLKKVF-SEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 117
Query: 139 AMNG 142
AMNG
Sbjct: 118 AMNG 121
Score = 34.7 bits (76), Expect = 0.070
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK 49
F+ GQ VK++ N+ T + GY +V F + E+A A+ +NGK
Sbjct: 78 FSEFGQ-VTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGK 122
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
V+VG+LSP D L F S Y ++ A V+ D + ++G+GFV + + E A+
Sbjct: 5 VYVGNLSPTTTDDMLREAF-SGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 140 MNG 142
M+G
Sbjct: 64 MDG 66
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
AF+ G A+ VMR+++T G+ FV + + EA A+ ++GK + G
Sbjct: 22 AFSGYGNVVDAI-VMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNG 71
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.7 bits (81), Expect = 0.017
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQ---TDEEAIDAMHKLNGKPIPGTFPVVRF 60
F+ G AV +MR++ TG G+ F+ F E I H ++G+ + V R
Sbjct: 26 FSNYGDVVEAV-IMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRD 84
Query: 61 RLNTASRETRA----NMQHE---REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 113
R + H R ++VG L + + F ++ +I V+
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYF-DQFGTIADVVVMY 143
Query: 114 D-NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK---PKSNL 164
D N+ +G+GF+ F ++D L+ + L K +++ AVPK P SN+
Sbjct: 144 DHNTQRPRGFGFITFDSDDAVDRVLH--KTFHELNGKLVEVKRAVPKEISPVSNI 196
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 36.7 bits (81), Expect = 0.017
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQ---TDEEAIDAMHKLNGKPIPGTFPVVRF 60
F+ G AV +MR++ TG G+ F+ F E I H ++G+ + V R
Sbjct: 26 FSNYGDVVEAV-IMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRD 84
Query: 61 RLNTASRETRA----NMQHE---REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 113
R + H R ++VG L + + F ++ +I V+
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYF-DQFGTIADVVVMY 143
Query: 114 D-NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK---PKSNL 164
D N+ +G+GF+ F ++D L+ + L K +++ AVPK P SN+
Sbjct: 144 DHNTQRPRGFGFITFDSDDAVDRVLH--KTFHELNGKLVEVKRAVPKEISPVSNI 196
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 36.7 bits (81), Expect = 0.017
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 18/175 (10%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQ---TDEEAIDAMHKLNGKPIPGTFPVVRF 60
F+ G AV +MR++ TG G+ F+ F E I H ++G+ + V R
Sbjct: 26 FSNYGDVVEAV-IMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDGRTVEAKKAVPRD 84
Query: 61 RLNTASRETRA----NMQHE---REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 113
R + H R ++VG L + + F ++ +I V+
Sbjct: 85 DQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYF-DQFGTIADVVVMY 143
Query: 114 D-NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK---PKSNL 164
D N+ +G+GF+ F ++D L+ + L K +++ AVPK P SN+
Sbjct: 144 DHNTQRPRGFGFITFDSDDAVDRVLH--KTFHELNGKLVEVKRAVPKEISPVSNI 196
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
AF++ GQ L V V+ +K P G+A+V F + EEA A+ +LN + + G
Sbjct: 40 AFSQYGQ-VLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDG 89
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/74 (24%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
++VG+L ++ + L ++F + + ++ ++ LD +G KG+GF++F + + A A
Sbjct: 267 LYVGNLHFNMSELQLRQIFEA-FGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 140 MNGYCGLGTKPLKI 153
+NG + + +K+
Sbjct: 326 LNGKLEIAGRTIKV 339
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 36.3 bits (80), Expect = 0.023
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 18/174 (10%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHF---QTDEEAIDAMHKLNGKPIPGTFPVVRF 60
F + G AV +MR++ TG G+ F+ F E I H ++G+ + V R
Sbjct: 35 FGKYGDLVEAV-IMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRD 93
Query: 61 RLNTASRETR----------ANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAK 110
R N R ++VG L + + F ++ +I
Sbjct: 94 DQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYF-DQFGTIADVV 152
Query: 111 VILD-NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 163
V+ D N+ +G+GF+ F +E+ L+ + L K +++ AVPK S+
Sbjct: 153 VMYDHNTQRPRGFGFITFDSEESVDMVLH--KTFHELNGKMVEVKRAVPKELSS 204
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGN 129
+++G +S D D+ L F KY + A ++ D + G +G+GF+ F +
Sbjct: 17 LFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVFAD 65
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 36.3 bits (80), Expect = 0.023
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 137
++V L D SL F +Y I+ K ++D SG +KGYGF+ F + RNAL
Sbjct: 130 IFVHGLGWDTKADSLIDAF-KQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNAL 186
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 36.3 bits (80), Expect = 0.023
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 136
V+VG L+ + +L + F +Y I A VI D N+G +KGYGFV F + + R A
Sbjct: 26 VFVGGLAWETQSETLRQHF-EQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 36.3 bits (80), Expect = 0.023
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM 73
+ ++ +K P G+AF+ ++T+EEA+ A+ ++GK + G V T S +RA
Sbjct: 106 MNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVE-EAKTRSDMSRAKP 164
Query: 74 QHE 76
+ +
Sbjct: 165 RRD 167
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor
SC35 contains similarity to splicing factor; contains
Pfam profile PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
V + R++ TG+ G+AFV ++ +EA A+ +L+G+ + G V+F
Sbjct: 45 VFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 95 LYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 142
LY +FA KY + + D +G ++G+ FVR+ +DE A+ ++G
Sbjct: 32 LYPLFA-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor
SC35 contains similarity to splicing factor; contains
Pfam profile PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 303
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
V + R++ TG+ G+AFV ++ +EA A+ +L+G+ + G V+F
Sbjct: 45 VFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQF 91
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 95 LYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 142
LY +FA KY + + D +G ++G+ FVR+ +DE A+ ++G
Sbjct: 32 LYPLFA-KYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDG 79
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.9 bits (79), Expect = 0.030
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
E SV V +LS D L +F + ++ V +D + ++G+GFV F + ++ + A
Sbjct: 173 ENSVRVTNLSEDTRGPDLMELFRP-FGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRA 231
Query: 137 LYAMNGYCGLGTKPLKICTAVPK 159
+ +NGY G L++ + PK
Sbjct: 232 INKLNGY-GYDNLILRVEWSTPK 253
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.030
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 10/133 (7%)
Query: 27 GYAFVHFQTDEEAIDAMHKLN-----GKPIPGTFPVVRFRLNTASRETRANMQHEREFSV 81
G F+ + EEA A+ L G+ + + + + A RET + + F++
Sbjct: 135 GLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVP---TFNL 191
Query: 82 WVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL-DNSGYTKGYGFVRFGNEDEQRNALYAM 140
+V +L+ + L F + ++ + +VI +N + GYGFV F + + AL
Sbjct: 192 FVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEF 251
Query: 141 NGYCGLGTKPLKI 153
G LG +P+++
Sbjct: 252 QGKDFLG-RPIRL 263
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.9 bits (79), Expect = 0.030
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG-----KPIPGTFPVVRFRLNTASRE 68
V + +N TG P G+AFV F ++A +A+ K NG +PI + V + N A+
Sbjct: 360 VFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADA 419
Query: 69 TRANMQHEREFS 80
T A+ ++E S
Sbjct: 420 TTASADGDKEGS 431
Score = 34.7 bits (76), Expect = 0.070
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 116 SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+G KG+ FV+F + + NA+ NG+ G +P+ + AVPK
Sbjct: 368 TGLPKGFAFVKFTCKKDAANAIKKFNGHM-FGKRPIAVDWAVPK 410
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETR 70
++ NK + E G+AFV F E+ A+ NG + G V+ + S + R
Sbjct: 51 LVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRPSLQER 105
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 18 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRET 69
R+ +TG+P G+ FV F +A DA H ++G + G V F + T
Sbjct: 69 RDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPT 120
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 116 SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLG 147
+G +G+GFV+F + + +A + M+GY LG
Sbjct: 73 TGDPRGFGFVQFMDPADAADAKHHMDGYLLLG 104
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 103 YTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNG 142
+ IK + LD SGY KGY + + ++E ++A+ AMNG
Sbjct: 118 FGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNG 158
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 35.5 bits (78), Expect = 0.040
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
++V +LSP ++ F + + + ++++++ G GYGFV F + DE + AL
Sbjct: 246 LFVANLSPQTKISDIFDFF-NCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENK 304
Query: 141 NG 142
NG
Sbjct: 305 NG 306
Score = 34.3 bits (75), Expect = 0.092
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 77 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNA 136
R+ +++V +LSP + + F + ++I+++ G G GFV F + +E + A
Sbjct: 487 RKKTLFVANLSPRTKISHIIKFFKD-VAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKA 545
Query: 137 LYAMNG 142
L MNG
Sbjct: 546 LQKMNG 551
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 99 FASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYC 144
F K + ++I++ G G GFV F + +E AL NG C
Sbjct: 146 FFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKNGEC 191
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK 49
FN +G+ +++++M N G+ GY FV F + +E A+ NG+
Sbjct: 264 FNCVGE-VVSIRLMVNH-EGKHVGYGFVEFASADETKKALENKNGE 307
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V++MR K +G+ GYAFV F++ + A +A+ LN G
Sbjct: 121 VRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRG 160
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 137
++V L D +L F +Y I+ K + D SG +KGYGF+ + + RNAL
Sbjct: 142 IFVHGLGWDTKTETLIEAF-KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 137
++V L D +L F +Y I+ K + D SG +KGYGF+ + + RNAL
Sbjct: 142 IFVHGLGWDTKTETLIEAF-KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 35.1 bits (77), Expect = 0.053
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 137
++V L D +L F +Y I+ K + D SG +KGYGF+ + + RNAL
Sbjct: 142 IFVHGLGWDTKTETLIEAF-KQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 34.7 bits (76), Expect = 0.070
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 18 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRET 69
R+ +TG+P G+ F+ F +A +A H+++G + G V F + T
Sbjct: 70 RDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKPT 121
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
S+ V +L D L R F ++ +K + D +G +G+GF++F + + A +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPF-EQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 139 AMNGYCGLG 147
M+GY LG
Sbjct: 97 QMDGYLLLG 105
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 34.7 bits (76), Expect = 0.070
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
++VG L+ + ++ R F ++ I A VI D N+G +KGYGFV F + A
Sbjct: 24 IFVGGLAWETQRDTMRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 140 MN 141
MN
Sbjct: 83 MN 84
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 47
F + G+ AV V+ +K TG GY FV F+ E A+ A +N
Sbjct: 42 FEQFGEIVEAV-VITDKNTGRSKGYGFVTFKEAEAAMRACQNMN 84
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 34.3 bits (75), Expect = 0.092
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
V+VG L+ + + R F ++ I A +I D N+G +KGYGFV F D A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 34.3 bits (75), Expect = 0.092
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
V+VG L+ + + R F ++ I A +I D N+G +KGYGFV F D A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 33.9 bits (74), Expect = 0.12
Identities = 12/39 (30%), Positives = 27/39 (69%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
++++++ T P G+ F+ F+++++A A+ LNGK + G
Sbjct: 96 RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNG 134
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 86 LSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
LS D SL ++FA IK + + KG+GF+ F +ED+ + AL A+NG
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQ-----TQRPKGFGFITFESEDDAQKALKALNG 129
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 47
++++R+KFT G+AFVHF + E+A A+ N
Sbjct: 487 LRLVRDKFTHVSRGFAFVHFYSVEDATKALEATN 520
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 1 MAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
+A F++ G+ + V ++R+K TG+ G+AF+ ++ I A+ LNG + G
Sbjct: 53 LAVFSQYGEI-VDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLG 104
Score = 32.3 bits (70), Expect = 0.37
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 66 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGF 124
S E + +++ V+VG + D+ + L VF S+Y I +I D +G +KG+ F
Sbjct: 23 SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVF-SQYGEIVDVNLIRDKGTGKSKGFAF 81
Query: 125 VRFGNEDEQRNALYAMNGYCGLG-TKPLKICTAVPK 159
+ + ++ A+ +NG LG T + C A K
Sbjct: 82 LAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKK 117
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 131
+++ L+ D L +F+S Y ++ A VILD +G +KGYGFV F + D
Sbjct: 77 LFIRGLAADTTTEGLRSLFSS-YGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNED 131
+++ L+ D L +F+S Y ++ A VILD +G +KGYGFV F + D
Sbjct: 77 LFIRGLAADTTTEGLRSLFSS-YGDLEEAIVILDKVTGKSKGYGFVTFMHVD 127
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 136
V+VG L+ + SL F ++ I A VI D +SG +KGYGFV F + + + A
Sbjct: 9 VFVGGLAWETHKVSLRNYF-EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNA 136
V+VG L+ + SL F ++ I A VI D +SG +KGYGFV F + + + A
Sbjct: 9 VFVGGLAWETHKVSLRNYF-EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKA 64
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
++V L+P +D L+ +F S++ ++ +A VI D +G + Y F+ F N++ A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIF-SRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFK 303
Query: 140 MN 141
M+
Sbjct: 304 MD 305
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
V+VG L+ + ++ + F ++ I A VI D SG +KGYGFV F + R+A
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
V+VG L+ + ++ + F ++ I A VI D SG +KGYGFV F + R+A
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 32.3 bits (70), Expect = 0.37
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
V+VG L+ + ++ + F ++ I A VI D SG +KGYGFV F + R+A
Sbjct: 15 VFVGGLAWETHKETMKKHF-EQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSA 70
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNAL 137
V+VG L+ + + R F ++ I A +I D + G +KGYGFV F + D A+
Sbjct: 19 VFVGGLAWETPTDEMRRYF-DQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
+++VG LS + +L V SKY IK +++ +G ++GYGFV + E E A
Sbjct: 65 TLFVGRLSHHTTEDTLREVM-SKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 31.9 bits (69), Expect = 0.49
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
++V LS + L FAS + + A+VI D +SG +KG+GFV + ++ A
Sbjct: 36 LFVSGLSRLTTNEKLQDAFAS-FGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 140 MN 141
MN
Sbjct: 95 MN 96
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRL 62
AF GQ + +V+ ++ +G G+ FV + T E+A A ++N K + G V F
Sbjct: 53 AFASFGQL-VDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGW---VIFVD 108
Query: 63 NTASRETRANMQHE 76
RE R +Q E
Sbjct: 109 PARPREPRRPLQQE 122
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.5 bits (68), Expect = 0.65
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 77 REF-SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 135
R+F S+++ +L V + L+ +F S + + + + D G ++G+ F+ F + D
Sbjct: 14 RKFTSLYIANLDAQVSEEMLFLMF-SDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGR 72
Query: 136 ALYAMNG 142
A+ M+G
Sbjct: 73 AMLHMDG 79
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
V+ F GE G+AF+ F++ + A AM ++G+ I
Sbjct: 47 VLAKDFRGESRGFAFIEFESADSAGRAMLHMDGRLI 82
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
+++V D +L F S Y I+ V++D ++G KGYGFV F R AL
Sbjct: 409 NIFVRGFGWDTTQENLKTAFES-YGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREAL 466
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) /
9G8-like SR protein (SRZ21) nearly identical to
9G8-like splicing factor SRZ21 [Arabidopsis thaliana]
GI:3435096, RSZp21 protein [Arabidopsis thaliana]
GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 13 AVKVMRNKFTGE-PAGYAFVHFQTDEEAIDAMHKLNGK 49
A V+RN + P GYAF+ F + +A+DA+ L+ K
Sbjct: 24 AFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) /
9G8-like SR protein (SRZ21) nearly identical to
9G8-like splicing factor SRZ21 [Arabidopsis thaliana]
GI:3435096, RSZp21 protein [Arabidopsis thaliana]
GI:2582643
Length = 187
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 13 AVKVMRNKFTGE-PAGYAFVHFQTDEEAIDAMHKLNGK 49
A V+RN + P GYAF+ F + +A+DA+ L+ K
Sbjct: 24 AFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 28 YAFVHFQTDEEAIDAMHKLNGKPIPG 53
YAFV+F DE+A A+ L G P+ G
Sbjct: 60 YAFVNFNHDEDAFAAIESLQGFPLSG 85
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor
RSP31 (RSP31) identical to SP|P92964
Arginine/serine-rich splicing factor RSP31 {Arabidopsis
thaliana}
Length = 264
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 26 AGYAFVHFQTDEEAIDAMHKLNGKP 50
+GYAFV+F+ + +A DA+ KL+ P
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFP 59
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V + R+ ++G+P G+AFV F +A +A +N + G
Sbjct: 76 VYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAG 115
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor,
64 kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 31.1 bits (67), Expect = 0.86
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
++ +++ ++ TG+P GY F ++ +E A+ A L I G
Sbjct: 36 VSFRLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYEING 77
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 30.7 bits (66), Expect = 1.1
Identities = 28/140 (20%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G+ G+ V + A A L+G+ + G +R+ + + + ++ E ++W
Sbjct: 244 GKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPK-----ENSSEGALW 298
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
V +L + + L+ +F+S Y I+ + + + ++ F + + + AL +NG
Sbjct: 299 VNNLDSSISNEELHGIFSS-YGEIREVRRTMHENSQV----YIEFFDVRKAKVALQGLNG 353
Query: 143 YCGLGTKPLKICTAVPKPKS 162
G + LK+ P+ S
Sbjct: 354 LEVAG-RQLKLAPTCPEGTS 372
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+++VG+L D+ + + +F SKY + ++ L GY FV F + + +A+Y
Sbjct: 8 TIYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 140 MNGY 143
+GY
Sbjct: 65 RDGY 68
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 20 KFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K P GYAFV F+ +A DA++ +G G
Sbjct: 39 KIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDG 72
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+++VG+L D+ + + +F SKY + ++ L GY FV F + + +A+Y
Sbjct: 8 TIYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 140 MNGY 143
+GY
Sbjct: 65 RDGY 68
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 20 KFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K P GYAFV F+ +A DA++ +G G
Sbjct: 39 KIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDG 72
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK----GYGFVRFGNEDEQRN 135
+++VG+LSP VD+ L R F ++ I + K++ + K GFV F N + +
Sbjct: 180 NLYVGNLSPKVDENFLLRTF-GRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQA 238
Query: 136 ALYAMNG 142
A M G
Sbjct: 239 AKDEMQG 245
>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
oxidoreductase family protein contains Pfam profile:
PF05187 Electron transfer flavoprotein-ubiquinone
oxidoreductase
Length = 633
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
LA+ M + + H + D EA D K P V+ F + T+ +
Sbjct: 485 LAISAMEHYVLKGKVPFTLKHGKADHEATDLARKWTPIVYPKPDGVLSFDVPTSLYRSNT 544
Query: 72 NMQHEREFSVWVGDLS-PDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK 120
N H++ + + D P+ ++ Y S+Y + + I D G K
Sbjct: 545 NHDHDQPSHLRLRDPKIPEKVNFPEYAAPESRYCPARVYEYIEDEEGKPK 594
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+V+VG+L D+ + + +F SKY + ++ L GY FV F + + +A++
Sbjct: 8 TVYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 140 MNGY 143
+GY
Sbjct: 65 RDGY 68
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 20 KFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K P GYAFV F +A DA+H +G G
Sbjct: 39 KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDG 72
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+V+VG+L D+ + + +F SKY + ++ L GY FV F + + +A++
Sbjct: 8 TVYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 140 MNGY 143
+GY
Sbjct: 65 RDGY 68
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 20 KFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K P GYAFV F +A DA+H +G G
Sbjct: 39 KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDG 72
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+V+VG+L D+ + + +F SKY + ++ L GY FV F + + +A++
Sbjct: 8 TVYVGNLPGDIREREVEDLF-SKYGPV--VQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 140 MNGY 143
+GY
Sbjct: 65 RDGY 68
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 20 KFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K P GYAFV F +A DA+H +G G
Sbjct: 39 KVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDG 72
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) /
9G8-like SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352,
9G8-like SR protein [Arabidopsis thaliana] GI:3435094;
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain) and PF00098: Zinc
knuckle; identical to cDNA 9G8-like SR protein (SRZ22)
GI:3435093
Length = 200
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 25 PAGYAFVHFQTDEEAIDAMHKLNGK 49
P GYAF+ F+ +A DA+ L+GK
Sbjct: 37 PPGYAFLDFEDPRDARDAIRALDGK 61
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 25 PAGYAFVHFQTDEEAIDAMHKLNGK 49
P GYAF+ F+ +A DA+ +++GK
Sbjct: 37 PPGYAFLDFEDSRDARDAIREVDGK 61
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGK 49
GEP G FV F + EA A+ K GK
Sbjct: 413 GEPVGCGFVEFNSSNEAEKALQKKTGK 439
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 99 FASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
F S I ++I+D+ G G GFV F + +E AL G
Sbjct: 395 FFSDVGEIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTG 438
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
V V +LSP + + + F + + + ++++++ G GYGFV F + AL
Sbjct: 160 VIVSNLSP-LTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEK 218
Query: 141 NG 142
NG
Sbjct: 219 NG 220
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 10 RPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
R + + + R+K T +P G+AF ++T+E A A+ +G
Sbjct: 32 RVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVKLFSG 70
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 68 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRF 127
ET ++ R+ +++V +L P + F + ++I+D SG G G+ F
Sbjct: 286 ETPYFVEEARKKTLFVTNLPPRTSIQRMLYFFQD--FEVVRVRLIVDQSGKHMGCGYFEF 343
Query: 128 GNEDEQRNALYAMNG 142
+ +E AL NG
Sbjct: 344 ASANEAEKALEQRNG 358
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 110 KVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG-YCGLGTKPLKICTAVPKP 160
++I++++G G GFV F + E NAL G Y G LK P P
Sbjct: 213 RLIVNHTGKHVGKGFVEFASAKEAENALEKKKGEYLQDGEIFLKAANIAPFP 264
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain), PF00098: Zinc knuckle
Length = 249
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 28 YAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
YAFV F +A DA H L+G+ G+ V F
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEF 37
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain), PF00098: Zinc knuckle
Length = 290
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 28 YAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
YAFV F +A DA H L+G+ G+ V F
Sbjct: 46 YAFVEFGDPRDADDARHYLDGRDFDGSRITVEF 78
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
FN+ G+ L ++ + TG+P+G A++ F E A +A+ L+G + N
Sbjct: 536 FNKFGE-VLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL-SLDGTSFMSRILKIVKGSN 593
Query: 64 TASRETRANMQHER 77
++E ++M R
Sbjct: 594 GQNQEAASSMSWSR 607
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 20 KFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
K P GYAFV F+ +A DA++ +G G
Sbjct: 39 KIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDG 72
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 45
+++++ +K TG+P G A+ F DE A+ K
Sbjct: 679 SIRILHHKDTGKPRGLAYADFVDDEHLAAAIAK 711
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 45
+++++ +K TG+P G A+ F DE A+ K
Sbjct: 679 SIRILHHKDTGKPRGLAYADFVDDEHLAAAIAK 711
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 47
F+R G+ +A ++ K G+ +A++ F+T++EA DA+ +N
Sbjct: 23 FSRKGE--IADVKLKRKSDGKSRQFAYIGFRTEQEAQDAITYVN 64
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 99 FASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGY 143
F S++ ++K +V + +G +K +GF++F + + A AMN Y
Sbjct: 79 FFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAMNDY 124
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 28.3 bits (60), Expect = 6.1
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 68 ETRANMQHER----EFSVWVGDLSPDVDDYSLYRVF--ASKYTSIKTAKVILDNSGYTKG 121
E ++ HER EF ++VG L + L +VF + T ++ K + +KG
Sbjct: 199 EEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILK--NPQTKKSKG 256
Query: 122 YGFVRFGNEDEQRNAL 137
F+RF ++ + A+
Sbjct: 257 SAFLRFATVEQAKRAV 272
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V++++N T + G AF+ F T E+A A+ +L I G
Sbjct: 243 VRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMING 282
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
+++V L D +L F Y I V++D ++G KG+GFV F R AL
Sbjct: 164 NIFVRGLGWDTTHENLKAAF-EVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,650,131
Number of Sequences: 28952
Number of extensions: 257893
Number of successful extensions: 974
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 334
length of query: 280
length of database: 12,070,560
effective HSP length: 80
effective length of query: 200
effective length of database: 9,754,400
effective search space: 1950880000
effective search space used: 1950880000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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