Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001940-TA|BGIBMGA001940-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(280 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 129 5e-31
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 101 1e-22
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 64 3e-11
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 61 2e-10
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 55 1e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 1e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 46 8e-06
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 43 4e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 42 1e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 5e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.002
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.006
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.026
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.060
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.060
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.060
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.080
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 32 0.080
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 32 0.080
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 32 0.11
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 31 0.14
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.32
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 29 0.56
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.56
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.56
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 29 0.98
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.98
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 28 1.3
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.3
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 28 1.3
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 28 1.3
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 27 2.3
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 2.3
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.3
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 27 3.0
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 27 3.0
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 4.0
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 26 5.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 5.2
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 26 5.2
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy... 25 9.1
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 25 9.1
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 129 bits (311), Expect = 5e-31
Identities = 69/164 (42%), Positives = 110/164 (67%), Gaps = 8/164 (4%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
+N LG + + VK++RN++TG AGY FV F + EA AM +N KPIPGT + F+LN
Sbjct: 113 WNTLG-KAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHL--FKLN 168
Query: 64 TASRE--TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTK 120
AS ++ E+S++VGDLSP+V+++ +Y +FAS+Y S K+AK++ D + ++
Sbjct: 169 WASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSR 228
Query: 121 GYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 164
GYGFVRF +E++Q++AL M G G +P+++ A PK K+++
Sbjct: 229 GYGFVRFTDENDQKSALAEMQGQI-CGDRPIRVGLATPKSKAHV 271
Score = 38.3 bits (85), Expect = 0.001
Identities = 31/126 (24%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Query: 34 QTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTAS--RETRANMQHEREFSV------WVGD 85
+ D++ +D +K N +P+ P+ + S E +N R+ +V W+G+
Sbjct: 40 EQDDQEVDNDYKSNDEPVQSQDPISPNMASNESGNSENTSNYGSSRDENVYQKTTLWMGE 99
Query: 86 LSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCG 145
L P V + + +V+ + ++K + +G GY FV F + E +A+ +MN
Sbjct: 100 LEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPI 158
Query: 146 LGTKPL 151
GT L
Sbjct: 159 PGTNHL 164
Score = 29.9 bits (64), Expect = 0.42
Identities = 42/161 (26%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
+ K+M + T GY FV F + + A+ ++ G+ I G P+ R+ A+ +++A+
Sbjct: 215 SAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQ-ICGDRPI---RVGLATPKSKAH 270
Query: 73 MQHEREFSVW----VGDLS-----PDVDDYSLYRVFA---SKYTSIKTAKVILDNSG--- 117
+ VG S P D + VF SK+ S + K + N G
Sbjct: 271 VFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIV 330
Query: 118 YTK-----GYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKI 153
Y K G GFV+F N A+ + GY LG +++
Sbjct: 331 YVKIPPGKGCGFVQFVNRQSAEIAINQLQGY-PLGNSRIRL 370
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 101 bits (242), Expect = 1e-22
Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 5/158 (3%)
Query: 11 PLAVKVMRNKFTGEPA--GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRE 68
P+ VKVMR+K + Y FV F + A A+ K N IPG + T
Sbjct: 111 PVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGI 170
Query: 69 TRAN-MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVR 126
N + + EFS++VGDL P +D L+ F S Y S +AK+I+D +G ++ YGFVR
Sbjct: 171 QHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVR 230
Query: 127 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSNL 164
F +E EQ++AL M GY G +PL+I A PK ++++
Sbjct: 231 FSSEKEQQHALMHMQGYLCQG-RPLRISVASPKSRASI 267
Score = 28.7 bits (61), Expect = 0.98
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 137
++W+GDL P +D + +++AS + ++K + +S Y FV+F + AL
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 138 YAMN 141
N
Sbjct: 146 MKYN 149
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 63.7 bits (148), Expect = 3e-11
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 79 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 138
F ++VG+L DV+D SLY+ F S+Y S+ KV+ D G T+G+GFV F + D+ A
Sbjct: 30 FRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWR 88
Query: 139 AMNGYCGLGTKPLKICTAVPKPKSN 163
NG +G++P+K+ A K N
Sbjct: 89 EKNGKY-IGSRPVKLSRATSDVKPN 112
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 60.9 bits (141), Expect = 2e-10
Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 10/140 (7%)
Query: 4 FNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRL 62
FN +G P+A ++V R+ T GYA+V+F E+ A+ +LN I G P R+
Sbjct: 100 FNSIG--PVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGR-PC---RI 153
Query: 63 NTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 122
+ R+ +++ +V++ +L P +D+ +L+ F S + I + KV +D G KGY
Sbjct: 154 MWSQRDP--SLRKMGTGNVFIKNLDPAIDNKALHDTF-SAFGKILSCKVAVDELGNAKGY 210
Query: 123 GFVRFGNEDEQRNALYAMNG 142
GFV F + + A+ +NG
Sbjct: 211 GFVHFDSVESANAAIEHVNG 230
Score = 53.2 bits (122), Expect = 4e-08
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 24 EPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHERE----- 78
+P G+ FV++ E A A+ +LN K G V RE ++E+
Sbjct: 299 KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKM 358
Query: 79 -----FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 133
++++ +L +VDD L F S + +I +AK++ D G +KG+GFV + +E
Sbjct: 359 NKYQGVNLFIKNLQDEVDDERLKAEF-SAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEA 417
Query: 134 RNALYAMNGYCGLGTKPLKICTAVPK 159
A+ MN L KPL + A K
Sbjct: 418 NKAVTEMNQRM-LAGKPLYVALAQRK 442
Score = 48.8 bits (111), Expect = 9e-07
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G GY FVHF + E A A+ +NG + V ++ R+++ +V+
Sbjct: 205 GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVY 264
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMN 141
+ +L ++ + +F ++ I + ++ D + +G+GFV + N + + A+ +N
Sbjct: 265 IKNLDTEITEQEFSDLF-GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Score = 33.1 bits (72), Expect = 0.046
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
S++VG+L P V + L+ +F S + + +V D + + GY +V F N ++ AL
Sbjct: 81 SLYVGELDPSVTEAMLFELFNS-IGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 139 AMNGYCGLGTKPLKI 153
+N Y + +P +I
Sbjct: 140 ELN-YTLIKGRPCRI 153
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 55.2 bits (127), Expect = 1e-08
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 7/143 (4%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM 73
+ + R++ G+ F F +++ A LN + G P+ R+N AS++ N
Sbjct: 40 IHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGK-PI---RVNRASQDRGVNT 95
Query: 74 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 133
+++VG+L P VD+ LY F++ +K +V D +G +KGYGFV + + +
Sbjct: 96 LIGA--NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETA 153
Query: 134 RNALYAMNGYCGLGTKPLKICTA 156
A+ AMN L KP+ + A
Sbjct: 154 DAAIEAMNNQF-LMNKPITVSYA 175
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 51.6 bits (118), Expect = 1e-07
Identities = 36/147 (24%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
+++R+K +G G A+V F E+++ A L+GK + G +V+ +R+ R +
Sbjct: 270 QIVRDKISGRSKGVAYVEF-CHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAE 328
Query: 75 HEREFS-------VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRF 127
R S + V ++ ++ D + +F + I+ + D+ +KG+G++++
Sbjct: 329 LARAASAEIPFHRLCVSNIHFNLTDEDVKAIF-EPFGDIEFVHLQRDDQNRSKGFGYIQY 387
Query: 128 GNEDEQRNALYAMNGYCGLGTKPLKIC 154
N RNAL MNG+ L + +++C
Sbjct: 388 RNPISARNALEKMNGF-DLAGRNMRVC 413
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 45.6 bits (103), Expect = 8e-06
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 69 TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRF 127
T+ + +V+VG LS +VDD L + F +Y +I A+VI+D SG +KGYG+V F
Sbjct: 253 TKPSQDSNETCTVFVGRLSWNVDDQWLGQEF-EEYGTIVGARVIMDGQSGRSKGYGYVDF 311
Query: 128 GNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
E A A NG + + + + + P+P
Sbjct: 312 -ETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
Score = 36.3 bits (80), Expect = 0.005
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNT---ASRE 68
+ +V+ + +G GY +V F+T E A A+ K I G +V L+ A+ +
Sbjct: 290 VGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGR--MVNLDLSNPRPANPQ 347
Query: 69 TRANMQ--------HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYT 119
A + E +V+VG+LS + + L F I++ ++ D SG
Sbjct: 348 PYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLPTDPQSGRL 406
Query: 120 KGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
KG+G+V F + D + + MNG+ G +P ++ + P+
Sbjct: 407 KGFGYVTFSDIDSAKKCV-EMNGHFIAG-RPCRLDFSTPR 444
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
++VG+L D +L +F S+ A++ + +G +KG+G V+F NE++ +++ +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTD-IGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 141 NGYCGLGTKPLKICTA 156
NGY G +PL++ A
Sbjct: 341 NGY-RYGGRPLQLSYA 355
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 22 TGEPAGYAFVHFQTDEEAIDAMHKLNG 48
TG G+ V F+ + +A ++ KLNG
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNG 342
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 41.9 bits (94), Expect = 1e-04
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 21/160 (13%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDE---EAIDAMHKLNGKPIPGTFPVVRF 60
F + G+ L VMR+ TG G+ F+ F+ + E + H L+GK I + R
Sbjct: 183 FEQFGE-VLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR- 240
Query: 61 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYT 119
+ E+ ++VG + D + +R F +++ + A +++D ++G
Sbjct: 241 ------------EEQEKTAKMFVGGVPGDCTEEE-FRNFFNQFGRVLDATLMMDKDTGRP 287
Query: 120 KGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+G+GFV + NE + Y + KP+++ A PK
Sbjct: 288 RGFGFVTYENESAVEATM--SQPYITIHGKPVEVKRATPK 325
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.5 bits (88), Expect = 5e-04
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
V+VG++ DV + + +F ++ +KT K++LD +G KGYGF F + + A+
Sbjct: 9 VFVGNIPYDVSEQQMTEIF-NQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRK 67
Query: 140 MNGYCGLGTKPLKICTAVPKPKSN 163
+N LG + +++ P+ N
Sbjct: 68 LNN-SELGPRKIRVEFPSNDPRRN 90
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
FN++G K++ + TG GY F F E A+ KLN + + R+
Sbjct: 27 FNQVGPVK-TFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPR----KIRVE 81
Query: 64 TASRETRANMQHE 76
S + R N +E
Sbjct: 82 FPSNDPRRNQSYE 94
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 37.5 bits (83), Expect = 0.002
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 10/164 (6%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTF-------P 56
F+ +G AV V+ N TGE GY FV F E+A A +L K + G P
Sbjct: 25 FSDVGPIKHAV-VVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATP 83
Query: 57 VVRFRLNT-ASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN 115
R ++T ++ + ++ + + + +L + SK+ ++ K+
Sbjct: 84 RKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKG 143
Query: 116 SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
G G+ FV + A+ ++NG + +P+ + AV K
Sbjct: 144 GGRMCGFAFVWMKDRKAAEEAMNSLNG-TEIDGRPIAVDWAVSK 186
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 35.9 bits (79), Expect = 0.006
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 135
E F+ VG+LS D+ + L F TSI+ VI + ++G+G+V F D
Sbjct: 91 EPPFTAHVGNLSFDLTENDLGDFFGEGVTSIRL--VIDPLTERSRGFGYVEFETADTLSA 148
Query: 136 ALYAMNGYCGLGTKPLKICTAVPK 159
AL A++G +G +P++I A P+
Sbjct: 149 AL-ALSGEDLMG-RPVRITVAEPR 170
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.9 bits (74), Expect = 0.026
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYA 139
V+VG++ ++ + + +F +K+ ++++D SG KGYGF + + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQS-GPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
Query: 140 MNGYCGLGTKPLKI 153
+N Y GT+ L++
Sbjct: 66 LNNY-DAGTRRLRV 78
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.7 bits (71), Expect = 0.060
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F+R G + ++ +V+R+K TG+ YAF+ F E A K+ I + V F +
Sbjct: 264 FSRFG-KIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQS 322
Query: 64 TASRETRANMQHEREFS 80
A N +R+ S
Sbjct: 323 VARYRQYYNSNRDRKRS 339
Score = 29.5 bits (63), Expect = 0.56
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
++V L+P D L +F S++ I + +VI D +G + Y F+ F N++ A +
Sbjct: 246 LFVCKLNPVTQDEDLELIF-SRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 140 M 140
M
Sbjct: 305 M 305
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.7 bits (71), Expect = 0.060
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 20 KFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHERE 78
KF G+AF F T EA +AM L + G V+++ AS T +MQH E
Sbjct: 755 KFDRSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQY----ASNATMDDMQHAIE 809
Score = 32.3 bits (70), Expect = 0.080
Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFR---LNTASRETRANMQHEREFSVWV 83
G+ FV F+ A+ AMH +NG + G ++ ++ A+ + + + + +
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILI 725
Query: 84 GDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGY 143
+L + + + + Y +++ +V +G+ F F E NA+ A+
Sbjct: 726 KNLPFEATKKDVQSLLGA-YGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALKNT 784
Query: 144 CGLG 147
LG
Sbjct: 785 HLLG 788
Score = 31.1 bits (67), Expect = 0.18
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 19 NKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
+K T P G+A++ F ++A+ A +L+ KP G
Sbjct: 357 DKKTNNPKGFAYIDFHDADDAVRAYLELDAKPFQG 391
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 32.7 bits (71), Expect = 0.060
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 77 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNA 136
R+ +V VG+L+P V + LY F + I + + + Y FV F ++ + A
Sbjct: 4 RKATVHVGNLAPSVTESLLYNAFI-PFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEA 62
Query: 137 LYAMN 141
+ MN
Sbjct: 63 MENMN 67
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.3 bits (70), Expect = 0.080
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 115 NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
NSG +KGYGFV F + A +NG +G K + +C A K
Sbjct: 420 NSGISKGYGFVAFRQIEAAVRAKDTLNGMM-VGKKRIFVCFAERK 463
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 32.3 bits (70), Expect = 0.080
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEE 38
++V+RNK TG+ GYAFV F+ + +
Sbjct: 129 IRVVRNKVTGKSMGYAFVVFERERD 153
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 32.3 bits (70), Expect = 0.080
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V++MR T G+ F+ F T EEA A+ LN + G
Sbjct: 130 VRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYG 169
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.9 bits (69), Expect = 0.11
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 19/127 (14%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVR-----------FRLNTASRETRANMQH 75
G+ FV + +A D ++ GK G+ VV FR + AS+ R
Sbjct: 38 GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPR--- 94
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 135
F + V +LS DV L V T D G G V F E++ RN
Sbjct: 95 RTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFT-----DAHRENPGAGVVEFSTEEDMRN 149
Query: 136 ALYAMNG 142
AL ++NG
Sbjct: 150 ALTSLNG 156
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 24 EPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVR 59
E G V F T+E+ +A+ LNG+ I G +R
Sbjct: 132 ENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAVTLR 167
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 31.5 bits (68), Expect = 0.14
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 34 QTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA----NMQHEREFSVWVGDLSPD 89
Q D + + K N TF +T RE+R N Q R +++G++ +
Sbjct: 91 QKDRKNLPRNQKSNEIQEKQTFQTPSSEKSTTERESRPFVPPNSQQMRRM-LFIGNIPKE 149
Query: 90 VDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGY 143
+DD+ + ++ + + + + D +GF F + ++ AL A+N +
Sbjct: 150 LDDFWMDKILRLS-GKLASWRRVADADNSMTSFGFAEFESNEQFSRALEALNDF 202
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.32
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 120 KGYGFVRFGNEDEQRNALYAMNG 142
+G+GFV F N ++Q A+ MNG
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNG 280
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 25 PAGYAFVHFQTDEEAIDAMHKLNGKPI 51
P+G AFV F E+ A+ LNGK +
Sbjct: 88 PSGIAFVTFNNQEDVDKAIETLNGKTL 114
Score = 27.5 bits (58), Expect = 2.3
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 62 LNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYT----SIKTAKVILDNSG 117
++ ++ ++ Q +F V+VG LS + +F + T +I +V
Sbjct: 27 VHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRL 86
Query: 118 YTKGYGFVRFGNEDEQRNALYAMNG 142
G FV F N+++ A+ +NG
Sbjct: 87 VPSGIAFVTFNNQEDVDKAIETLNG 111
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.5 bits (63), Expect = 0.56
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 63 NTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 122
N S + Q + +++ ++ P+V + + +F +Y I +A+V+ G +
Sbjct: 57 NPISLDVVPEWQKPSYYMLFISNIDPEVSENDIKYLF-QRYNFI-SARVLRCVDGTSTSI 114
Query: 123 GFVRFGNEDEQRNALYAMNG-YC 144
F+ NE + +NA M G +C
Sbjct: 115 AFIWLANESDIQNAQVEMQGAFC 137
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.5 bits (63), Expect = 0.56
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHF 33
F R GQ P +V++ +K +G GYAFV F
Sbjct: 112 FKRAGQVP-SVRIPTDKTSGRQKGYAFVEF 140
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.56
Identities = 11/46 (23%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 1 MAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKL 46
+ F+ G+ P+ + ++R+K TG+ G+AF+ ++ + A+ +
Sbjct: 48 LCVFSEFGE-PVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/61 (21%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
+++G+L D+++ + VF+ + V +G +KG+ F+++ ++QR+ + A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY---EDQRSTVLAV 89
Query: 141 N 141
+
Sbjct: 90 D 90
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 28.7 bits (61), Expect = 0.98
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
V ++ +KFTG P G+A++ F +A+ LNG
Sbjct: 84 VTILCDKFTGHPKGFAYIEFSEPSLVPNAL-LLNG 117
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.98
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 12/122 (9%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETR--------ANMQHERE 78
G+A+V F T E+A+ + + K + G +++ + + R ++ A++Q ++
Sbjct: 166 GFAYVDFAT-EDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKK 224
Query: 79 FS---VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 135
++VG+L + D L F + + +++G KG+GFV F + D
Sbjct: 225 EPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284
Query: 136 AL 137
A+
Sbjct: 285 AM 286
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGF 124
V L P+VD +S+ + S Y K K + SGYT GF
Sbjct: 178 VQKLIPNVD-FSVLKFGQSAYVDFKGVKCLFSRSGYTGEDGF 218
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 101 SKYTSIKTAKVI-LDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
SK+ IK+ + ++ +KGYGFV F + E A+ +NG
Sbjct: 442 SKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNG 484
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFA-----SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 132
E S++VG+L L+ +F SK+ + K +S + F+ F N+
Sbjct: 19 EISIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCS 78
Query: 133 QRNALYAMNG 142
NA+ ++NG
Sbjct: 79 ADNAIASLNG 88
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNG 48
GY FV F EA+ A++ LNG
Sbjct: 463 GYGFVSFSHPFEAVQAINTLNG 484
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 193 YWQNYSAWSGYYGQGEXXXXXXXXXXXXSDTTPAVAVKTQTDDLVLVDHKKPIDVDHM-- 250
+W S S +YG G +TP +A + +D K+ +D+ ++
Sbjct: 355 FWDRDS--SSFYGLGSKNFSSTGEAEGTGLSTPIIAESLKENDEFFAMEKENVDIQYLSQ 412
Query: 251 NNEFLDVNISLWDS 264
N+ DV S+ DS
Sbjct: 413 NDNTNDVLYSITDS 426
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 77 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAK---VILDNSGYTKGYGFVRFGNEDEQ 133
R F + + +P+ ++ L VF S+ + + V++ S YTK + E+
Sbjct: 342 RGFGLLIPSCTPNNPNHVLGIVFDSEQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAV 401
Query: 134 RNALYAMNGYCGLGTKP 150
NAL A+ + +KP
Sbjct: 402 NNALKALQHTLKISSKP 418
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
+++ +LS + +Y +F +Y ++ ++ L N+ T+G FV + N + R A +
Sbjct: 14 LFIKNLSFKITAEEMYDLFG-RYGPVR--QIRLGNTVQTRGTAFVVYENVQDARRACEKL 70
Query: 141 NGY 143
+GY
Sbjct: 71 SGY 73
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 2 AAFNRLGQ-RPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 43
A F++ G+ R + + V ++FT P G+ FV + +++A+D++
Sbjct: 50 ALFSKCGEIRRIIMGV--DRFTKTPCGFCFVEYFENQDALDSL 90
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 74 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 133
QHE ++WVG+L V ++ F S Y ++ + +++ K F+ F + +
Sbjct: 582 QHEPTHALWVGNLPSGVSATTVATTF-SAYGTVSSIRMLSH-----KHSAFLNFDSVETA 635
Query: 134 RNALYAMNG 142
++ L +NG
Sbjct: 636 KHVLEELNG 644
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 258 NISLWDSLEGSQWFPHDVI 276
+ISL+DS+ SQWF H I
Sbjct: 246 SISLFDSIINSQWFMHSSI 264
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
V + ++K TG G+AFV + + AI A +L+G
Sbjct: 231 VYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 44 HKLNGKPIPGTFPVVRFRLNTASRE 68
H G PIPG+ P + NTAS +
Sbjct: 311 HGSAGFPIPGSVPSTSYHANTASED 335
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 37 EEAIDAMHKLNGKPIPGTFPVVRFRLNTAS 66
EE +D NG+ +PGT P FR N A+
Sbjct: 15 EELLDECDSFNGEFVPGTIP---FRANGAA 41
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 5.2
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 79 FSVWVGDLSP-DVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 137
+S++VG L P + Y L +F SKY + K+I + + F+RF D Q+ A
Sbjct: 365 YSIFVGQLDPVNCTHYLLVDLF-SKYGKVIDCKII--HQSKKPAFAFLRF---DSQQAAY 418
Query: 138 YAMNG 142
A+ G
Sbjct: 419 AAVCG 423
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 79 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 137
+ + V + P+ + + +FA + +K + LD +GY KGY + + ++ + A+
Sbjct: 10 YIIIVTGVHPEATEEQVEDLFAD-FGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAV 68
Query: 138 YAMN 141
N
Sbjct: 69 DEKN 72
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/76 (21%), Positives = 29/76 (38%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 137
E + V +L DV + + +F K + +G +KG + F + A
Sbjct: 54 ESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAY 113
Query: 138 YAMNGYCGLGTKPLKI 153
G GT+ +K+
Sbjct: 114 EQYEGRLVDGTRKMKV 129
>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 9.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 193 YWQNYSAWSGYYGQGE 208
+W N W G YG GE
Sbjct: 357 WWWNNDTWDGLYGLGE 372
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPG 53
G AF +F + EEA + LNG I G
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITG 300
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,139
Number of Sequences: 5004
Number of extensions: 50916
Number of successful extensions: 205
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 78
length of query: 280
length of database: 2,362,478
effective HSP length: 72
effective length of query: 208
effective length of database: 2,002,190
effective search space: 416455520
effective search space used: 416455520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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