Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001940-TA|BGIBMGA001940-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(280 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 74 2e-13
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 59 5e-09
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 53 3e-07
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 50 2e-06
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 48 6e-06
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 45 6e-05
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 44 1e-04
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 44 1e-04
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 40 0.002
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.003
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 39 0.004
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 39 0.005
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 38 0.007
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 38 0.012
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 37 0.021
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 36 0.037
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.049
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 35 0.065
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.085
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 35 0.085
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.11
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 34 0.15
SB_52109| Best HMM Match : Vicilin_N (HMM E-Value=5.9) 34 0.15
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.15
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 33 0.20
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 32 0.60
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 31 1.1
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 31 1.4
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 30 1.8
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 30 2.4
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 28 7.4
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 28 9.8
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 9.8
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 28 9.8
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 73.7 bits (173), Expect = 2e-13
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 13/155 (8%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASR--ET 69
+++KVM + G+ G+ FV F+T EEA +A++ LNGK I G A R E
Sbjct: 136 VSLKVMTDP-EGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEV 194
Query: 70 RANMQHERE--------FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKG 121
+A ++ +R+ ++++ +L +DD L F S Y +I +AKV+ D+ G +KG
Sbjct: 195 KAEIEKKRQERINRFQGVNLYIKNLDDPIDDERLREEF-SPYGTISSAKVMKDDKGNSKG 253
Query: 122 YGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTA 156
+GFV F + +E A+ MNG L +KPL + A
Sbjct: 254 FGFVCFSSPEEATKAVTEMNGRI-LISKPLYVALA 287
Score = 60.1 bits (139), Expect = 2e-09
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 3/133 (2%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTD--EEAIDAMHKLNGKPIPGTFPVVRFRLNTASRET 69
L+++V R+ T GYA+V+FQ + A++A+ +++G + V ++ R
Sbjct: 40 LSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEAIARVDGMLLNDKKVFVGRWMSKKERIE 99
Query: 70 RANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGN 129
+ Q ++ +V+V + D+DD + + A I + KV+ D G +KG+GFV F
Sbjct: 100 KMGTQPKKFTNVYVKNFGDDMDDEQMKEICAEA-GKIVSLKVMTDPEGKSKGFGFVSFET 158
Query: 130 EDEQRNALYAMNG 142
+E A+ +NG
Sbjct: 159 PEEAEEAVNVLNG 171
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 80 SVWVGDLSPDVDDYSLYRVF--ASKYTSIKTAKVILDNSGYTKGYGFVRF 127
S++VGDL+PDV + LY F A SI+ + ++ + GY +V F
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRR--SLGYAYVNF 61
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
+ KVM++ G G+ FV F + EEA A+ ++NG+ + V R+ +
Sbjct: 240 SAKVMKDD-KGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQLA 298
Query: 73 MQHEREFS 80
QH S
Sbjct: 299 AQHMHRIS 306
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 58.8 bits (136), Expect = 5e-09
Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 9/147 (6%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM 73
V + +++ T GY FV F +E+A A+ +N + G P+ R+N AS N
Sbjct: 42 VHMPKDRITQLHQGYGFVEFLGEEDADYAIKVMNMIKVYGK-PI---RVNKASAH---NK 94
Query: 74 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDE 132
+ ++++G+L +VD+ LY F++ ++T K++ D+ +G +KG+ F+ F + D
Sbjct: 95 NLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDA 154
Query: 133 QRNALYAMNGYCGLGTKPLKICTAVPK 159
A+ AMNG L +P+ + A K
Sbjct: 155 SDAAIEAMNGQY-LCNRPITVSYAFKK 180
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFR 61
+AF + Q P K+MR+ TG G+AF++F + + + A+ +NG+ + V +
Sbjct: 121 SAFGVILQTP---KIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 62 LNTASRETRANMQHER 77
S+ R ER
Sbjct: 178 FKKESKGERHGSAAER 193
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 58.0 bits (134), Expect = 8e-09
Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
K++R++ TG+ GYAFV++ ++A A+ ++NG + V F +++ AN+
Sbjct: 57 KLIRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFARPSSTEIKNANL- 115
Query: 75 HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQR 134
++ L D+ + + +F + I T+KV+ D SG +G GFVRF E +
Sbjct: 116 -------YISGLPKDMKEEEVEALF-KPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQ 167
Query: 135 NALYAMNGYCGLGTKPLKICTAVPKPKSN 163
A+ +N GT +K+ P ++
Sbjct: 168 TAIDDLNNKTLPGTN-VKLTVKFANPPNS 195
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
++V L + LY++F S Y +I ++ LD KGYGFV N +E +A+ +
Sbjct: 274 IFVYGLPQEATPLFLYKLF-SPYGAITNIELKLD-----KGYGFVNMSNYEEACHAICCL 327
Query: 141 NG 142
NG
Sbjct: 328 NG 329
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPG---TFPVVRFRLNTASRETRANMQHEREFSVWV 83
GY FV+ EEA A+ LNG P G FP + S+ E + W+
Sbjct: 308 GYGFVNMSNYEEACHAICCLNGTPQHGKYSRFPSKHLKTTNLSKFENNRSFPYGELNKWM 367
Query: 84 GDLS 87
DL+
Sbjct: 368 ADLN 371
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 52.8 bits (121), Expect = 3e-07
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
+F ++ GDL +V D SL R FA KYTS AK++ D S +KGYGFV F + ++ A
Sbjct: 216 DFRIFCGDLGSEVTDESLTRAFA-KYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKA 274
Query: 137 LYAMN 141
+ MN
Sbjct: 275 MREMN 279
Score = 31.5 bits (68), Expect = 0.80
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 47
L K++R+K + + GY FV F+ + I AM ++N
Sbjct: 244 LKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMREMN 279
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 50.4 bits (115), Expect = 2e-06
Identities = 40/154 (25%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF--- 60
F+++GQ V+++ ++ + G A++ F TD+ A+ L+G+ + G +V
Sbjct: 166 FSKVGQVS-DVRIISDRNSRRSKGIAYIEF-TDKSAVPLAIGLSGQKLLGAPIMVMLTQA 223
Query: 61 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYT 119
N + E Q ++VG L ++ + + VF + ++ + ++I D+ + +
Sbjct: 224 EKNRLAAEAERLKQPLGPTRLYVGSLHFNITEAMVKAVF-EPFGTVDSVQLIYDSETNRS 282
Query: 120 KGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKI 153
KGYGFV+F + + A+ MNG+ L +PLKI
Sbjct: 283 KGYGFVQFREAEAAKRAMEQMNGF-ELAGRPLKI 315
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 48.4 bits (110), Expect = 6e-06
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 67 RETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVR 126
+E + F VW+G LS DV + L +F +K+ +K ++ D SG ++ GFV
Sbjct: 512 QEVNEGFKMAASFPVWIGGLSEDVTENVLLELF-NKFGPVKDVVILRDESGKSRQSGFVH 570
Query: 127 FGNEDEQRNALYAMNGYCGLG 147
F + D A MNG LG
Sbjct: 571 FWSSDVAEAANVGMNGCDILG 591
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 46.4 bits (105), Expect = 3e-05
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 10/129 (7%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
K++R+K +G G+ FV + T E+A A+ KLNG I V F +R
Sbjct: 77 KIVRHKPSGWSYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAF--------SRPGGD 128
Query: 75 HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQ 133
+ + +++V ++ + + + F + Y +I +++ D S G KG GFV + + E
Sbjct: 129 NTKGANLYVCNIPKQLPEAEFRKAFEA-YGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEA 187
Query: 134 RNALYAMNG 142
+ A+ +++G
Sbjct: 188 QAAISSLSG 196
Score = 38.3 bits (85), Expect = 0.007
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 134
E + ++ V + D+ D + +R+ S+ K++ SG++ G+GFV + ++ +
Sbjct: 44 ESKTTLIVNYIPQDMTDQT-FRMMFEAVASLNNCKIVRHKPSGWSYGFGFVDYNTTEDAQ 102
Query: 135 NALYAMNGYCGLGTKPLKICTAVP 158
A+ +NG+ +G K LK+ + P
Sbjct: 103 KAIDKLNGFT-IGNKVLKVAFSRP 125
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGT 54
+++R+K TG P G FV + EA A+ L+G PG+
Sbjct: 163 RLLRDKSTGLPKGCGFVLYDKKAEAQAAISSLSGTFFPGS 202
Score = 29.1 bits (62), Expect = 4.2
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDL 86
G+ FV T EEA +A+ LNG P+ R+ T +R +R H ++ D
Sbjct: 317 GFCFVTMATQEEAQNAIQTLNGFMYTNK-PLQSSRIRTLNRRSRLFKLH--YINLNRRDT 373
Query: 87 SP-DVDDYSLYRVFASK 102
P D +S Y V A K
Sbjct: 374 KPFDKKSHSGYEVKAKK 390
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 120 KGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLK 152
KG+ FV ++E +NA+ +NG+ KPL+
Sbjct: 316 KGFCFVTMATQEEAQNAIQTLNGFM-YTNKPLQ 347
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 46.4 bits (105), Expect = 3e-05
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF--RLNTASR---- 67
V+V+++ + G+ FV F E+A A+ +++ I G + R N ++
Sbjct: 542 VRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKPL 601
Query: 68 --ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFV 125
+ + + +V+VG+L PDV DY L ++F S+Y SI KV D KGY F+
Sbjct: 602 VWDDVFHQSSQLNTTVYVGNLPPDVKDYELQQMF-SQYGSILETKVFAD-----KGYAFI 655
Query: 126 RFGNEDEQRNAL 137
E ++ L
Sbjct: 656 NARGEKRRQRCL 667
Score = 34.7 bits (76), Expect = 0.085
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 15 KVMRNKFTGEPAG---YAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
KV+R K P Y FV F+T +A +A +++ + + V + N +
Sbjct: 394 KVVRCKMINSPTDKGPYCFVEFETHADAQEAKFRMDQRTVMDKKLKVNWATNHPGMKRGD 453
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVF 99
H F ++VGDL+ +VD+ L + F
Sbjct: 454 TNNH---FHIFVGDLAENVDNALLRKTF 478
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 45.2 bits (102), Expect = 6e-05
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNA 136
E+ ++G+LS VD+ +L F + KVI D +G +G+GFV FG+++E A
Sbjct: 4 EYRCYIGNLSYSVDEQALEEKFHG--CDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKA 61
Query: 137 LYAMNGYCGLGTKPLKICTAVPK 159
+ +G +P+K+ A P+
Sbjct: 62 IDEFDGQ-DFDGRPMKVNQAQPR 83
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
VKV+ ++ TG P G+ FV F + EE A+ + +G+ G
Sbjct: 33 VKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDG 72
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 44.0 bits (99), Expect = 1e-04
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F++ G+ + V + + TG P G+AFV F+ EA DA+ PI G P
Sbjct: 49 FSKYGEL-VGVDIKMDALTGRPRGFAFVQFKHQSEA-DAIDPKPAAPI-GKPP------- 98
Query: 64 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGY 122
H R ++VG L P+ D + F Y +K + I + +S +G+
Sbjct: 99 -----------HLRVKKIFVGGLKPETSDEKIREYFGKAYAPVKEIEYITEHSSNRRRGF 147
Query: 123 GFVRFGNED 131
FV F +ED
Sbjct: 148 CFVSFDSED 156
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM--QHEREFS-VWV 83
G+AFV + E A A+ ++NG + G V N Q ++++ +++
Sbjct: 144 GFAFVEYDLPEAAQLALEQMNGVLLGGRNIKVGRPSNVPQAAPLIEQFEQEAKKYARIYI 203
Query: 84 GDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGY 143
+ PD+ + + VF + + + +G KGYGF+ + N+ +A+ +MN +
Sbjct: 204 ASVHPDLLEDDIKSVFEAFGKVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIASMNLF 263
Query: 144 CGLGTKPLKICTAVPKPKSN 163
LG + L++ A+ P S+
Sbjct: 264 -DLGGQFLRVGRAITPPTSS 282
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 18 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTF 55
+ TG+ GY F+ ++ + A DA+ +N + G F
Sbjct: 232 KEPMTGKHKGYGFIEYENQQSANDAIASMNLFDLGGQF 269
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 41.5 bits (93), Expect = 7e-04
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAMHKL---NGKPIPGTFPVVRFRLNTASRETRAN 72
++R++ TG+ GY FV + T E A+ A +L K I G ++R ++ T A+
Sbjct: 144 LVRSEVTGDSKGYGFVEYATRENAMQAKQQLLNTASKYIGGR--ILRVAFAESNLLTYAD 201
Query: 73 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNED 131
+ H R +++V L D + L + S+ ++ A+V ++ +G ++G+ FV + +
Sbjct: 202 V-HSR--TLFVDRLPRDFKNGGLIKELFSQTGNVTFAQVAINPANGGSRGFAFVDYATAE 258
Query: 132 EQRNALYAMNG 142
E A NG
Sbjct: 259 EAEKGQRAHNG 269
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGT 54
F++ G A +V N G G+AFV + T EEA NG+ + G+
Sbjct: 226 FSQTGNVTFA-QVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGS 275
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 67 RETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVR 126
+E ++ + + ++++ D PD+ SL VF Y +I+ +I +G +KG+G+V
Sbjct: 51 QELLSHKEEHDQRTIYIRDFRPDIRKSSLESVFGP-YGAIEDLSIIRTQTGKSKGFGYVT 109
Query: 127 FGNEDEQRNAL 137
+ N + + AL
Sbjct: 110 YENAESAQRAL 120
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 39.5 bits (88), Expect = 0.003
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 9/140 (6%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G + A + F++ ++A A+ KLNGK + G V+ + S++ ++ + ++ +
Sbjct: 195 GHDSPTASLLFKSYKDARQAVAKLNGKTLKG----VKVKAVIESKDKSSSPKGSKKSRLI 250
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK---GYGFVRFGNEDEQRNALYA 139
+ +L+ + + L F S + + A V G G+GFV+F N + AL
Sbjct: 251 IRNLAFNCTEAILKETF-SAFGEVSEASVPQKKVGRRNRKMGFGFVQFTNVFDAAKALEE 309
Query: 140 MNGYCGLGTKPLKICTAVPK 159
MN LG +P+ + AVPK
Sbjct: 310 MNAKKILG-RPVAVDWAVPK 328
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPI---PGTFPVVRFRLNTASRETRANMQHER 77
G P G+AFV F +EA+ A+ N P P P+V F + S +A Q ++
Sbjct: 621 GRPLGFAFVEFTNHKEALAALRATNNNPELFGPDRRPIVEFSIEN-SVALKAKQQRQQ 677
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 39.1 bits (87), Expect = 0.004
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 77 REFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNA 136
R V+VG + D+ + L VF + I ++++D +G +GY FV + ++D+ +
Sbjct: 72 RGCEVFVGKIPRDLYEDELVPVFETA-GPIYEVRLMMDFNGQNRGYAFVVYTSKDDAKRC 130
Query: 137 LYAMNGYCGLGTKPLKICTAVPK 159
+ +N Y K + +C++V K
Sbjct: 131 VKTLNNYEIRKGKCIGVCSSVDK 153
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 39.1 bits (87), Expect = 0.004
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 108 TAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+ KVI D +G +G+GFV FG+EDE A+ +G L +P+K+ A P+
Sbjct: 37 SVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGE-DLDGRPMKVNKAQPR 88
Score = 37.9 bits (84), Expect = 0.009
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
L+VKV+ ++ TG P G+ FV F +++E A+ K +G+ + G
Sbjct: 36 LSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDG 77
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V+V+ ++ T P G+AFV F + + DA+++L+G+ G
Sbjct: 258 VQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDG 297
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 38.7 bits (86), Expect = 0.005
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRN 135
+ E SV++G+LS D D+ +L F K S T +VI G ++G+G+ F ++++
Sbjct: 177 KEEMSVFLGNLSFDADEETLAAFFEEKGLS-ATCRVI-TQEGRSRGFGYADFTSKEDYNK 234
Query: 136 ALYAMNGYCGLGTKPLKICTAVPKP 160
AL +NG G + ++I A KP
Sbjct: 235 AL-ELNGEDCCG-REIRINPANSKP 257
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 74 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDE 132
Q+ S+ V +LS D SL + + AKVI D SG ++G+GFV + + +
Sbjct: 284 QNPPNSSLIVRNLSYDTTTDSL----GAAFEGCSNAKVIFDRESGESRGFGFVDYDDVET 339
Query: 133 QRNALYAMNG 142
+ L M G
Sbjct: 340 AKKVLSEMAG 349
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
++++ L + D L + F + ++ +AKV +D + +K +GFV + N +NA+
Sbjct: 278 NLFIYHLPQEFTDADLMQTF-QPFGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQ 336
Query: 139 AMNGYCGLGTKPLKICTAVPK 159
MNG+ +G K LK+ PK
Sbjct: 337 HMNGF-QIGAKRLKVQLKRPK 356
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 38.3 bits (85), Expect = 0.007
Identities = 36/134 (26%), Positives = 71/134 (52%), Gaps = 13/134 (9%)
Query: 30 FVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPD 89
+V ++ E A A+ NG+ I G R++ AS + H+ + SV++G+L D
Sbjct: 16 YVVYKAAENANQAIAS-NGEEIDG----FHIRVDLASNDKA----HDHQRSVFIGNLPFD 66
Query: 90 VDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGT 148
+++ L +F + ++++ ++I D +G KG+G+V F ++D AL MN G
Sbjct: 67 IEEEPLRELFTT-CGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFAL-KMNNAEFKGR 124
Query: 149 KPLKICTAVPKPKS 162
K +++ + KP++
Sbjct: 125 K-IRVFPSKDKPQT 137
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFS 80
GY FV F +A DA+H LNG+ + G VV F + R + + R+FS
Sbjct: 723 GYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEF---SKGRRSEGGGRDRRDFS 773
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 36.7 bits (81), Expect = 0.021
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
SV+VG++ + + L +F+ I V +G KGYGF + +++ +A+
Sbjct: 26 SVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 140 MNGYCGLGTKPLKICTA 156
+NGY L + L++ +A
Sbjct: 86 LNGY-ELNGRALRVDSA 101
Score = 36.3 bits (80), Expect = 0.028
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
++ +++ ++ TG+P GY F ++ E A+ AM LNG + G
Sbjct: 52 ISFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNG 93
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 36.3 bits (80), Expect = 0.028
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 103 YTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+ ++ +AKV +D + +K +GFV + N +NA+ MNG+ +G K LK+ PK
Sbjct: 285 FGTVISAKVFIDKQTNMSKCFGFVSYDNVMSAQNAIQHMNGF-QIGAKRLKVQLKRPK 341
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 36.3 bits (80), Expect = 0.028
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
++V ++ + + ++ +F S Y IK V LD +G+ KGY V + E ++AL A
Sbjct: 295 LFVTNIHEEAQEDDIHELF-SDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEA 353
Query: 140 MNGYCGLG 147
+NG LG
Sbjct: 354 LNGAEMLG 361
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 22 TGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
TG GYA V ++T +EA A+ LNG + G
Sbjct: 330 TGFIKGYALVEYETFKEAQSALEALNGAEMLG 361
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 35.9 bits (79), Expect = 0.037
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 103 YTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPK 161
+ + + +I D +G +G+GFV FG+++E A+ +G L +P+K+ A P+
Sbjct: 119 FVASEAVNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQ-DLDGRPMKVNEAKPRGD 177
Query: 162 S 162
S
Sbjct: 178 S 178
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
AV ++ ++ TG P G+ FV F + EE A+ + +G+ + G
Sbjct: 124 AVNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDG 164
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 35.5 bits (78), Expect = 0.049
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
V++G + D + L VF + I ++++D SG TKG+ F F N+DE +NA+
Sbjct: 154 VFIGKVPRDCFEDELIPVF-EECGHIYDFRLMIDPISGLTKGFAFCTFSNKDEAQNAVKK 212
Query: 140 MNGYCGLGTKPLKICTAV 157
++ K L +C +V
Sbjct: 213 LDNKEIRPGKRLGVCISV 230
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI-PG 53
++M + +G G+AF F +EA +A+ KL+ K I PG
Sbjct: 182 RLMIDPISGLTKGFAFCTFSNKDEAQNAVKKLDNKEIRPG 221
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 28 YAFVHFQTDEEAIDAMHKLNGKPIPG 53
YAFVHF + A+ A+ + +GK + G
Sbjct: 364 YAFVHFTERDHALKAIEETDGKEMDG 389
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 35.1 bits (77), Expect = 0.065
Identities = 19/86 (22%), Positives = 40/86 (46%)
Query: 52 PGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKV 111
P FP + L + ++ + +++VG L P + +++ F++ ++ K
Sbjct: 15 PKCFPDGQVILICNDQSPSMDLLEQSRRTIFVGSLHPSTVESTIFEYFSTLGEQVEHVKC 74
Query: 112 ILDNSGYTKGYGFVRFGNEDEQRNAL 137
I SG +KG+ FVR ++ + L
Sbjct: 75 IRTLSGKSKGFAFVRLRKKEAVESVL 100
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 34.7 bits (76), Expect = 0.085
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 18 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG-KPIPGTFPVVRFRLNTASRETRAN---M 73
RN TGE G+A+V + + AI A KLNG + PG VV+F + S N M
Sbjct: 235 RNYNTGESKGFAYVTYNSVGSAIYAKEKLNGFEYPPGNKLVVKFAEDPPSGRPGGNDTSM 294
Query: 74 QH 75
QH
Sbjct: 295 QH 296
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 34.7 bits (76), Expect = 0.085
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 97 RVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
R F +Y +K +K++ D G +KGY F+ F +++
Sbjct: 25 RAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQE 59
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 51 IPGTFPVVRF-RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTA 109
+P + P+V R N+ + ++ R SV+VG L+ D+ L F ++ +++
Sbjct: 53 LPASKPLVAVSRYNSTLPSPKDIEKNSR--SVFVGGLASGTDEEGLKDYF-EQFGEVESV 109
Query: 110 KVILDNSGYTKGYGFVRFGNEDEQRNAL 137
+++ GY++ YGFV F ++ + L
Sbjct: 110 RIMRTFLGYSRNYGFVLFKDDGPSKEVL 137
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 33.9 bits (74), Expect = 0.15
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 47
F+R G L+ +V+R++ TGE YAF+ F+ DE+ A K++
Sbjct: 140 FSRFGTI-LSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFKMD 182
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
++V L+P D L +F S++ +I + +VI D +G + Y F+ F +++ A +
Sbjct: 122 LFVCKLNPVTTDEDLEIIF-SRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFK 180
Query: 140 MN 141
M+
Sbjct: 181 MD 182
>SB_52109| Best HMM Match : Vicilin_N (HMM E-Value=5.9)
Length = 118
Score = 33.9 bits (74), Expect = 0.15
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 140 MNGYCGLGTKPLKICTAVPKPKSNLXXXXXXXXXXXXXXXXXXDYNQYYDPSAY--WQNY 197
M G G G+KP+++ A PK Y Y P Y +Q Y
Sbjct: 4 MQGAVGCGSKPIRVSAATPKRPP---TTTTYAATTEATPTVAAQYGTQYTPQQYQQYQQY 60
Query: 198 -SAWSGYYGQ 206
+AW GY Q
Sbjct: 61 MAAWQGYAQQ 70
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+++V +L D + + +F SK+ +K +++ + +G KGYG+V + E A+
Sbjct: 172 TLFVSNLPFDAKESEIEELF-SKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAVLT 230
Query: 140 MN 141
++
Sbjct: 231 LD 232
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 33.5 bits (73), Expect = 0.20
Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 16/130 (12%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++ K + +K T GY FV F++ A A+ L K I A
Sbjct: 127 ISTKAILDKDTNLCKGYGFVDFESPISAQKAVAALVNKGIQAQM---------------A 171
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
Q + ++++ +L + D+ L +F SKY + + +++ D +KG GF R + +
Sbjct: 172 KQQEQDPTNLYIQNLPQNCDEAMLENMF-SKYGKVISTRILRDKDTNSKGVGFARMESAE 230
Query: 132 EQRNALYAMN 141
+ + N
Sbjct: 231 KCEQVIKDFN 240
Score = 32.3 bits (70), Expect = 0.46
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNALY 138
++++ L + D L R+ KY +I + K ILD ++ KGYGFV F + + A+
Sbjct: 101 NLYIRGLKANTTDDDLVRL-CHKYGTIISTKAILDKDTNLCKGYGFVDFESPISAQKAVA 159
Query: 139 AM 140
A+
Sbjct: 160 AL 161
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 78 EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD----NSGYTKGYGFVRFGNEDEQ 133
E +W+G+L + ++++ ++ ++ I+ + + N G +GY FV F +++
Sbjct: 386 ERKLWIGNLDKRLSEFNILKIL-QQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDA 444
Query: 134 RNALYAMN 141
R AL +N
Sbjct: 445 RKALRGLN 452
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGK 49
GEP GY FV F+ E+A A+ LN K
Sbjct: 428 GEPRGYCFVEFKKKEDARKALRGLNKK 454
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.9 bits (69), Expect = 0.60
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Query: 83 VGDLS----PDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
VGDL P S + + +++ I +V LD N+ ++G+GFVRF +++ +N L
Sbjct: 114 VGDLIVLGLPYATTESEMKEYFTRFGEIDFCEVKLDPNTRRSRGFGFVRFKKDEDAKNVL 173
Query: 138 YAMNGYCGLGTKPLKIC-TAVPKPKSNL 164
+ G ++C +P+PK L
Sbjct: 174 STSHRIQG------RLCEVRLPRPKEEL 195
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 31.9 bits (69), Expect = 0.60
Identities = 12/18 (66%), Positives = 17/18 (94%)
Query: 78 EFSVWVGDLSPDVDDYSL 95
EFS++VGDL+PDV+D+ L
Sbjct: 116 EFSIFVGDLTPDVNDHML 133
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
V+++RNK G G+ FV F T E A + M L G P+
Sbjct: 361 VRIVRNKI-GYTRGFGFVEFDTPEAAKEWMDYLKGGPL 397
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 91 DDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
+D L ++A++ + + +++ + GYT+G+GFV F + + + + G
Sbjct: 344 EDDVLQELYAAE-VAFRDVRIVRNKIGYTRGFGFVEFDTPEAAKEWMDYLKG 394
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 31.5 bits (68), Expect = 0.80
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 12 LAVKVMRNKF--TGEPA--GYAFVHFQTDEEAIDAMHKLNGKPIPG 53
L VK RN+F EP G+ FV F E+A A+ LNGK + G
Sbjct: 81 LIVKEPRNEFYQQQEPRSRGFGFVTFANPEDAQTAVKSLNGKEVQG 126
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 119 TKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
++G+GFV F N ++ + A+ ++NG G + LKI ++ +
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKEVQG-RTLKIAPSISR 137
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 10 RPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRET 69
+P+A++ + NK G+P+G AFV F + + A+ K N + G + + F+ +R+
Sbjct: 192 KPVAIRFVMNK-KGQPSGCAFVDFSSKSDLEKAL-KRNKDYLQGRY-IELFK--DTNRDF 246
Query: 70 RANMQHEREFSVWVGDLSPDVDD 92
N Q + E S W+ L DD
Sbjct: 247 DNNKQGDGEKS-WMRKLQEKGDD 268
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 28 YAFVHFQTDEEAIDAMHKLNGKPIPG 53
Y FV F+ D +A DA+++ NGK + G
Sbjct: 38 YGFVEFEDDRDADDAVYECNGKEMLG 63
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 101 SKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNAL 137
S++ ++ A V+ D G +KG+G V F ++ NA+
Sbjct: 147 SQFGDVERAVVVCDVRGRSKGHGIVEFSRKNNAHNAM 183
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 99 FASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLG 147
F Y K ++IL + GYGFV F D+ +A+Y NG LG
Sbjct: 22 FFYTYGRFKIREIILKD-----GYGFVEFDYSDDAEDAVYECNGKKMLG 65
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPG 53
GY FV F ++A DA+++ NGK + G
Sbjct: 39 GYGFVEFDYSDDAEDAVYECNGKKMLG 65
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 18 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
++KFT + G+AF++F E+A A+ L+G
Sbjct: 214 KDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V ++R+K +G G+ FV Q+ ++ A+ K+N + G
Sbjct: 37 VDILRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGG 76
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
+++G+L+ + D+ + + F ++ ++ D SG ++G+GFV + D+ A+
Sbjct: 11 LYIGNLNFNSDEGEIEQAFEE--FGVEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEK 68
Query: 140 MNGYCGLGTKPLKICTAVPKPKS 162
MN +G + + + A+ K ++
Sbjct: 69 MN-QSSVGGRNITVALALDKTEN 90
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
+V+VG+L + + L++VF +Y + ++ D + ++G F+ F + +NA+
Sbjct: 11 TVYVGNLPYSLTNSDLHKVF-ERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVA 69
Query: 139 AMN 141
A+N
Sbjct: 70 AVN 72
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
F R G + + V ++R+K T E G AF+ F + A +A+ +N K + G
Sbjct: 30 FERYG-KVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAAVNKKQMFG 78
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 11 PLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
PL +K++R++ T + GY FV+F +E +D ++ + + G
Sbjct: 132 PLEIKMVRDRETNKFKGYCFVNF-PNEHIVDKLYLVRHIQVKG 173
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVV 58
+ ++ N +P GYAF+ ++ + + A +GK I G VV
Sbjct: 35 ISMVYNSKASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVV 79
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYA 139
+++VG+L + L R+ K+ + + G Y FV+F + D A A
Sbjct: 238 TLFVGNLETGISCQDL-RLSFEKFGVVLDVDIKRPARGQGNTYAFVKFADLDVAAKAKCA 296
Query: 140 MNGYCGLGTKPLKI 153
M G C +G +KI
Sbjct: 297 MQGQC-IGRNHIKI 309
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 47
F+ G + L V + R K GE G+AF+ F++ ++A + N
Sbjct: 108 FSEFG-KVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQMFN 150
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRL 62
AF + G R V V RN P G+AFV ++ +A +A+ +L+G + V F
Sbjct: 23 AFEKFG-RLSKVWVARN-----PPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFSN 76
Query: 63 NTASRE 68
N R+
Sbjct: 77 NRGGRD 82
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V ++R+K TG+ G+ F+ ++ I A+ NG + G
Sbjct: 8 VNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGG 47
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 28 YAFVHFQTDEEAIDAMHKLNGKPI 51
Y+FV +++ A++AM LNGK +
Sbjct: 87 YSFVSYKSHNNALNAMRNLNGKAL 110
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEE---AIDAMH 44
+++ R+K + GYAFV F DE A D MH
Sbjct: 127 IRLSRSKKSARSKGYAFVEFACDEVAKIAADTMH 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.134 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,439,735
Number of Sequences: 59808
Number of extensions: 361423
Number of successful extensions: 682
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 99
length of query: 280
length of database: 16,821,457
effective HSP length: 81
effective length of query: 199
effective length of database: 11,977,009
effective search space: 2383424791
effective search space used: 2383424791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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