Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001940-TA|BGIBMGA001940-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(280 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51225-1|AAA96405.1| 692|Anopheles gambiae hexamerin protein. 26 1.4
AF020872-1|AAC31875.1| 692|Anopheles gambiae hexamerin A protein. 26 1.4
AF020871-1|AAC31874.1| 692|Anopheles gambiae hexamerin A protein. 26 1.4
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 25 1.8
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 25 1.8
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel... 25 3.2
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 24 5.6
AF020870-1|AAC31873.1| 692|Anopheles gambiae hexamerin A protein. 23 7.4
AY578809-1|AAT07314.1| 358|Anopheles gambiae Sloan-Kettering In... 23 9.7
>U51225-1|AAA96405.1| 692|Anopheles gambiae hexamerin protein.
Length = 692
Score = 25.8 bits (54), Expect = 1.4
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 45 KLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSV-WVGDLSPDVDDYSLYRVFASKY 103
+LN KP T V+ A + +R F + + ++D Y L A K
Sbjct: 494 RLNHKPFSYTMNVMSDYTGKAIIRAFVGPKFDRFFDLQFYKKYFFEIDQY-LVDFTAGKN 552
Query: 104 TSIKTAK----VILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCG 145
TS++ ++ + D + YT Y + G +++ AL +CG
Sbjct: 553 TSVRNSRDFYWSVKDRTMYTDLYKKIMLGYNGQEKFALDMSEAHCG 598
>AF020872-1|AAC31875.1| 692|Anopheles gambiae hexamerin A protein.
Length = 692
Score = 25.8 bits (54), Expect = 1.4
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 45 KLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSV-WVGDLSPDVDDYSLYRVFASKY 103
+LN KP T V+ A + +R F + + ++D Y L A K
Sbjct: 494 RLNHKPFSYTMNVMSDYTGKAIIRAFVGPKFDRFFDLQFYKKYFFEIDQY-LVDFTAGKN 552
Query: 104 TSIKTAK----VILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCG 145
TS++ ++ + D + YT Y + G +++ AL +CG
Sbjct: 553 TSVRNSRDFYWSVKDRTMYTDLYKKIMLGYNGQEKFALDMSEAHCG 598
>AF020871-1|AAC31874.1| 692|Anopheles gambiae hexamerin A protein.
Length = 692
Score = 25.8 bits (54), Expect = 1.4
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 45 KLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSV-WVGDLSPDVDDYSLYRVFASKY 103
+LN KP T V+ A + +R F + + ++D Y L A K
Sbjct: 494 RLNHKPFSYTMNVMSDYTGKAIIRAFVGPKFDRFFDLQFYKKYFFEIDQY-LVDFTAGKN 552
Query: 104 TSIKTAK----VILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCG 145
TS++ ++ + D + YT Y + G +++ AL +CG
Sbjct: 553 TSVRNSRDFYWSVKDRTMYTDLYKKIMLGYNGQEKFALDMSEAHCG 598
>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
Length = 3320
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 46 LNGKPIP--GTFPVVRFRLNTASRETRANMQHER 77
++G IP G FPV+ + + T +QHER
Sbjct: 750 VDGSSIPPLGKFPVIHYEMYTGESFFAVLLQHER 783
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 25.4 bits (53), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 46 LNGKPIP--GTFPVVRFRLNTASRETRANMQHER 77
++G IP G FPV+ + + T +QHER
Sbjct: 751 VDGSSIPPLGKFPVIHYEMYTGESFFAVLLQHER 784
>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
cytoskeletal structural protein protein.
Length = 1645
Score = 24.6 bits (51), Expect = 3.2
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 49 KPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
+P+ G +F++ +SR +N+ ERE S W
Sbjct: 613 EPLEGAI-TTKFKVQWSSRSDFSNVVGEREISEW 645
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 56 PVVRFRLNTASRETRANMQHEREFS 80
PV R L TA ++ + N ERE +
Sbjct: 537 PVTRTELETAKQKLQENANEERELT 561
>AF020870-1|AAC31873.1| 692|Anopheles gambiae hexamerin A protein.
Length = 692
Score = 23.4 bits (48), Expect = 7.4
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 45 KLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSV-WVGDLSPDVDDYSLYRVFASKY 103
+LN KP T V+ A + +R F + + ++D Y L A K
Sbjct: 494 RLNHKPFSYTMNVMSDYTGKAIIRAFVGPKFDRFFDLQFYKKYFFEIDQY-LVDFTAGKN 552
Query: 104 TSIKTAK----VILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCG 145
T ++ ++ + D + YT Y + G +++ AL +CG
Sbjct: 553 TFVRNSRDFYWSVKDRTMYTDLYKKIMLGYNGQEKFALDMSEAHCG 598
>AY578809-1|AAT07314.1| 358|Anopheles gambiae Sloan-Kettering
Institute proto-oncogeneproduct protein.
Length = 358
Score = 23.0 bits (47), Expect = 9.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
GEP+G +DE+ + + G P+PG
Sbjct: 70 GEPSGGGGGRAGSDEDELPQPRQPMGPPVPG 100
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.317 0.134 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 291,101
Number of Sequences: 2123
Number of extensions: 10524
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 10
length of query: 280
length of database: 516,269
effective HSP length: 63
effective length of query: 217
effective length of database: 382,520
effective search space: 83006840
effective search space used: 83006840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)
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