Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001940-TA|BGIBMGA001940-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(280 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical pr... 83 3e-16
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 72 5e-13
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 72 5e-13
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 68 7e-12
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 67 1e-11
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 62 4e-10
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 62 4e-10
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 62 4e-10
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 62 6e-10
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 62 6e-10
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 59 4e-09
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 58 9e-09
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 57 1e-08
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 57 1e-08
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 57 1e-08
Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical pr... 54 2e-07
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 52 3e-07
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 46 3e-05
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 46 3e-05
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 43 2e-04
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 43 2e-04
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 43 2e-04
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 43 3e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 40 0.003
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 40 0.003
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 38 0.008
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 38 0.008
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 37 0.018
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 37 0.018
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 37 0.018
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 37 0.018
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 37 0.018
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 37 0.018
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 37 0.018
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 37 0.018
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 37 0.018
U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (dele... 36 0.024
AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein. 36 0.024
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 36 0.032
Z66521-9|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 36 0.043
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 35 0.056
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 35 0.074
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 35 0.074
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 35 0.074
AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 35 0.074
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical pr... 33 0.17
U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 31 0.92
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 31 0.92
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.92
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 31 0.92
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 31 1.2
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 29 2.8
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 29 2.8
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 29 2.8
CU457741-8|CAM36349.1| 544|Caenorhabditis elegans Hypothetical ... 29 2.8
AF043695-17|AAB97549.1| 544|Caenorhabditis elegans Hypothetical... 29 2.8
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical pr... 29 4.9
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 28 6.5
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 28 6.5
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 28 6.5
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p... 28 8.5
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 28 8.5
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 28 8.5
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 28 8.5
>Z77669-6|CAB01243.2| 371|Caenorhabditis elegans Hypothetical
protein T07F10.3 protein.
Length = 371
Score = 82.6 bits (195), Expect = 3e-16
Identities = 54/138 (39%), Positives = 73/138 (52%), Gaps = 8/138 (5%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
F G P VK + K E GY F+ F T +EA ++ LNG IPG F +RF L
Sbjct: 88 FTECGHAPYKVKRVYVK--DELKGYCFIEFITFDEARQTLYDLNGNRIPG-FKDIRFNLC 144
Query: 64 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYG 123
A+ N EF++ V + D+ D LYR+F KY S + AK+ G +KG G
Sbjct: 145 FANDSYNPNS----EFNLHVSSVPDDMADAELYRIF-DKYQSCRGAKMFRFVDGSSKGSG 199
Query: 124 FVRFGNEDEQRNALYAMN 141
FVRFGN+ +Q+ AL M+
Sbjct: 200 FVRFGNQTDQQMALVEMH 217
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFAS-KYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 138
++W+GD+ D + +L +VF + K +V + + KGY F+ F DE R LY
Sbjct: 69 TLWIGDVPTDWTEETLSQVFTECGHAPYKVKRVYVKDE--LKGYCFIEFITFDEARQTLY 126
Query: 139 AMNG 142
+NG
Sbjct: 127 DLNG 130
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 71.7 bits (168), Expect = 5e-13
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
L+++V R+ T GYA+V+FQ +A AM +N + + G P+ R+ + R+
Sbjct: 59 LSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGK-PM---RIMWSQRDPA- 113
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
M+ ++++ +L +D+ S+Y F S + +I + KV +D G++KGYGFV F E+
Sbjct: 114 -MRRSGAGNIFIKNLDKVIDNKSIYDTF-SLFGNILSCKVAIDEDGFSKGYGFVHFETEE 171
Query: 132 EQRNALYAMNGYCGLGTK 149
+NA+ +NG G K
Sbjct: 172 AAQNAIQKVNGMLLAGKK 189
Score = 63.3 bits (147), Expect = 2e-10
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G GY FVHF+T+E A +A+ K+NG + G V A R ++ +V+
Sbjct: 157 GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVY 216
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
V + + +L +VFA K+ +I + +V + G +KG+GFV F N +E A+ A++
Sbjct: 217 VKNFGDHYNKETLEKVFA-KFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 143 YCGLGTK-PLKICTAVPK 159
GT L +C A K
Sbjct: 275 STIEGTDLKLHVCRAQKK 292
Score = 57.2 bits (132), Expect = 1e-08
Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM-----QHER 77
G+ G+ FV F EEA A+ L+ I GT + E A + QH+
Sbjct: 249 GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKA 308
Query: 78 E-------FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
E +++V +L VDD L + F S Y +I +AKV+ D +G +KG+GFV F
Sbjct: 309 ERMQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITSAKVMTDENGRSKGFGFVCFEKP 367
Query: 131 DEQRNALYAMNGYCGLGTKPLKI 153
+E +A+ MN + +KPL +
Sbjct: 368 EEATSAVTEMNSKM-VCSKPLYV 389
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
S++VGDL PDV++ L+ F S + + +V DN + + GY +V F + A+
Sbjct: 33 SLYVGDLHPDVNESILFEKF-SAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 139 AMNGYCGLGTKPLKI 153
MN + L KP++I
Sbjct: 92 TMN-FEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
+ KVM ++ G G+ FV F+ EEA A+ ++N K +
Sbjct: 345 SAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 71.7 bits (168), Expect = 5e-13
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 7/138 (5%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
L+++V R+ T GYA+V+FQ +A AM +N + + G P+ R+ + R+
Sbjct: 59 LSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGK-PM---RIMWSQRDPA- 113
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
M+ ++++ +L +D+ S+Y F S + +I + KV +D G++KGYGFV F E+
Sbjct: 114 -MRRSGAGNIFIKNLDKVIDNKSIYDTF-SLFGNILSCKVAIDEDGFSKGYGFVHFETEE 171
Query: 132 EQRNALYAMNGYCGLGTK 149
+NA+ +NG G K
Sbjct: 172 AAQNAIQKVNGMLLAGKK 189
Score = 62.1 bits (144), Expect = 4e-10
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G GY FVHF+T+E A +A+ K+NG + G V A R ++ +V+
Sbjct: 157 GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVY 216
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
V + + +L ++FA K+ +I + +V + G +KG+GFV F N +E A+ A++
Sbjct: 217 VKNFGDHYNKETLEKLFA-KFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHD 274
Query: 143 YCGLGTK-PLKICTAVPK 159
GT L +C A K
Sbjct: 275 STIEGTDLKLHVCRAQKK 292
Score = 58.8 bits (136), Expect = 4e-09
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM-----QHER 77
G+ G+ FV F EEA A+ L+ I GT + E A + QH+
Sbjct: 249 GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKA 308
Query: 78 E-------FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
E +++V +L VDD L + F S Y +I +AKV+ D +G +KG+GFV F
Sbjct: 309 ERMQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITSAKVMTDENGRSKGFGFVCFEKP 367
Query: 131 DEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+E +A+ MN + +KPL + A K
Sbjct: 368 EEATSAVTEMNSKM-VCSKPLYVAIAQRK 395
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
S++VGDL PDV++ L+ F S + + +V DN + + GY +V F + A+
Sbjct: 33 SLYVGDLHPDVNESILFEKF-SAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 139 AMNGYCGLGTKPLKI 153
MN + L KP++I
Sbjct: 92 TMN-FEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
+ KVM ++ G G+ FV F+ EEA A+ ++N K +
Sbjct: 345 SAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMV 382
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 68.1 bits (159), Expect = 7e-12
Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
FN++G KV+ F G YAFV F +A A+ +N + + V + +
Sbjct: 66 FNQIGS-VTKTKVI---FDGSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVE 121
Query: 64 TASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGY 122
++++ + R F V+VGDLS +VD+ L F + + AKVI D N+ +KGY
Sbjct: 122 PGQQQSKIDTT--RHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRDTNTTKSKGY 178
Query: 123 GFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
GFV + +E A+ MNG LG + ++ A KP
Sbjct: 179 GFVSYPKREEAERAIEQMNGQ-WLGRRTIRTNWATRKP 215
Score = 37.5 bits (83), Expect = 0.011
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
KV+R+ T + GY FV + EEA A+ ++NG+ + + + + +
Sbjct: 165 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHY 224
Query: 75 HEREF------------SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTK 120
+E+ + SV+VG+++ +D + + FAS + T ++ K+ +
Sbjct: 225 NEKSYDEIYNQTSGDNTSVYVGNIASLTED-EIRQGFASFGRITEVRIFKM--------Q 275
Query: 121 GYGFVRFGNEDEQRNALYAMN 141
GY FV+F N+D A+ MN
Sbjct: 276 GYAFVKFDNKDAAAKAIVQMN 296
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 67.3 bits (157), Expect = 1e-11
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLN 63
FN++G AV + F G YAFV F +A A+ NG+ + V +
Sbjct: 60 FNQIG----AVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFE 115
Query: 64 TASR-ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKG 121
E R+ + R F V+VGDL ++D L F K+ + AK+I DN+ KG
Sbjct: 116 PREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFV-KFGEVSEAKIIRDNNTNKGKG 174
Query: 122 YGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
YGFV + ++ A+ MNG LG + ++ A KP
Sbjct: 175 YGFVSYPRREDAERAIDEMNG-AWLGRRTIRTNWATRKP 212
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 3 AFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
AF + G+ A K++R+ T + GY FV + E+A A+ ++NG
Sbjct: 151 AFVKFGEVSEA-KIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNG 195
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPG 53
GYAFV F+T E A A+ ++N I G
Sbjct: 291 GYAFVKFETKESAARAIVQMNNADIGG 317
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 62.1 bits (144), Expect = 4e-10
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++V + +++ T G+ FV F +E+A A+ LN + G P+ ++N AS +
Sbjct: 40 VSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGK-PI---KVNKASAHEK- 94
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNE 130
NM + +++VG+L P+VD+ LY F++ ++ K++ D +SG +KG+ F+ F +
Sbjct: 95 NM--DVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASF 152
Query: 131 DEQRNALYAMNG 142
+ AL AMNG
Sbjct: 153 EASDTALEAMNG 164
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
K+MR+ +G G+AF++F + E + A+ +NG+ + V + S+ R
Sbjct: 131 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTA 190
Query: 75 HER 77
ER
Sbjct: 191 AER 193
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 62.1 bits (144), Expect = 4e-10
Identities = 41/132 (31%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
++V + +++ T G+ FV F +E+A A+ LN + G P+ ++N AS +
Sbjct: 50 VSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGK-PI---KVNKASAHEK- 104
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNE 130
NM + +++VG+L P+VD+ LY F++ ++ K++ D +SG +KG+ F+ F +
Sbjct: 105 NM--DVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASF 162
Query: 131 DEQRNALYAMNG 142
+ AL AMNG
Sbjct: 163 EASDTALEAMNG 174
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
K+MR+ +G G+AF++F + E + A+ +NG+ + V + S+ R
Sbjct: 141 KIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTA 200
Query: 75 HER 77
ER
Sbjct: 201 AER 203
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 62.1 bits (144), Expect = 4e-10
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G GY FVHF+T+E A +A+ K+NG + G V A R ++ +V+
Sbjct: 94 GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVY 153
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
V + + +L ++FA K+ +I + +V + G +KG+GFV F N +E A+ A++
Sbjct: 154 VKNFGDHYNKETLEKLFA-KFGNITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHD 211
Query: 143 YCGLGTK-PLKICTAVPK 159
GT L +C A K
Sbjct: 212 STIEGTDLKLHVCRAQKK 229
Score = 58.8 bits (136), Expect = 4e-09
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM-----QHER 77
G+ G+ FV F EEA A+ L+ I GT + E A + QH+
Sbjct: 186 GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKA 245
Query: 78 E-------FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
E +++V +L VDD L + F S Y +I +AKV+ D +G +KG+GFV F
Sbjct: 246 ERMQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITSAKVMTDENGRSKGFGFVCFEKP 304
Query: 131 DEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+E +A+ MN + +KPL + A K
Sbjct: 305 EEATSAVTEMNSKM-VCSKPLYVAIAQRK 332
Score = 54.4 bits (125), Expect = 9e-08
Identities = 36/115 (31%), Positives = 62/115 (53%), Gaps = 14/115 (12%)
Query: 37 EEAIDAMH--KLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPDVDDYS 94
E A+D M+ L+GKP+ R+ + R+ M+ ++++ +L +D+ S
Sbjct: 24 ERAMDTMNFEALHGKPM---------RIMWSQRDPA--MRRSGAGNIFIKNLDKVIDNKS 72
Query: 95 LYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTK 149
+Y F S + +I + KV +D G++KGYGFV F E+ +NA+ +NG G K
Sbjct: 73 IYDTF-SLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKK 126
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
+ KVM ++ G G+ FV F+ EEA A+ ++N K +
Sbjct: 282 SAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMV 319
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 61.7 bits (143), Expect = 6e-10
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G GY FVHF+T+ A A+ K+NG + V A R + +V+
Sbjct: 182 GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVF 241
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
V + +D L +F SK+ I +A V+ D G KG+GFV F ++D A+ +N
Sbjct: 242 VKNFGEHLDQEKLSAMF-SKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLND 300
Query: 143 YCGLGTK-PLKICTAVPK 159
GT L +C A K
Sbjct: 301 SILEGTDCKLSVCRAQKK 318
Score = 61.3 bits (142), Expect = 7e-10
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGT---FPVV 58
A F++ G+ AV VM + G+P G+ FV F + A A+ KLN + GT V
Sbjct: 256 AMFSKFGEITSAV-VMTDA-QGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVC 313
Query: 59 RFRLNTA-----SRETRA----NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTA 109
R + + R+ A +Q + +++V ++ D++D L F+S + +I +A
Sbjct: 314 RAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSS-FGTITSA 372
Query: 110 KVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
KV++D +G +KG+GFV F +E A+ MN +G KPL + A K
Sbjct: 373 KVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKM-IGAKPLYVALAQRK 421
Score = 60.5 bits (140), Expect = 1e-09
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
L+++V R+ + GYA+V+FQ +A A+ +N + I G P+ R+ + R+ A
Sbjct: 84 LSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGR-PM---RIMWSQRDPAA 139
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
+ ++++ +L +D+ S+Y F S + +I + KV D+ G +KGYGFV F E
Sbjct: 140 --RRAGNGNIFIKNLDRVIDNKSVYDTF-SLFGNILSCKVATDDEGNSKGYGFVHFETEH 196
Query: 132 EQRNALYAMNG 142
+ A+ +NG
Sbjct: 197 SAQTAIEKVNG 207
Score = 37.1 bits (82), Expect = 0.014
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
S+++GDL PDV + L+ F S + + +V DN S + GY +V F + AL
Sbjct: 58 SLYIGDLHPDVSEAMLFEKF-SMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 139 AMN 141
MN
Sbjct: 117 TMN 119
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 61.7 bits (143), Expect = 6e-10
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVW 82
G GY FVHF+T+ A A+ K+NG + V A R + +V+
Sbjct: 182 GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVF 241
Query: 83 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
V + +D L +F SK+ I +A V+ D G KG+GFV F ++D A+ +N
Sbjct: 242 VKNFGEHLDQEKLSAMF-SKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLND 300
Query: 143 YCGLGTK-PLKICTAVPK 159
GT L +C A K
Sbjct: 301 SILEGTDCKLSVCRAQKK 318
Score = 61.3 bits (142), Expect = 7e-10
Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGT---FPVV 58
A F++ G+ AV VM + G+P G+ FV F + A A+ KLN + GT V
Sbjct: 256 AMFSKFGEITSAV-VMTDA-QGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVC 313
Query: 59 RFRLNTA-----SRETRA----NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTA 109
R + + R+ A +Q + +++V ++ D++D L F+S + +I +A
Sbjct: 314 RAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSS-FGTITSA 372
Query: 110 KVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPK 159
KV++D +G +KG+GFV F +E A+ MN +G KPL + A K
Sbjct: 373 KVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKM-IGAKPLYVALAQRK 421
Score = 60.5 bits (140), Expect = 1e-09
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRA 71
L+++V R+ + GYA+V+FQ +A A+ +N + I G P+ R+ + R+ A
Sbjct: 84 LSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGR-PM---RIMWSQRDPAA 139
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNED 131
+ ++++ +L +D+ S+Y F S + +I + KV D+ G +KGYGFV F E
Sbjct: 140 --RRAGNGNIFIKNLDRVIDNKSVYDTF-SLFGNILSCKVATDDEGNSKGYGFVHFETEH 196
Query: 132 EQRNALYAMNG 142
+ A+ +NG
Sbjct: 197 SAQTAIEKVNG 207
Score = 37.1 bits (82), Expect = 0.014
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
S+++GDL PDV + L+ F S + + +V DN S + GY +V F + AL
Sbjct: 58 SLYIGDLHPDVSEAMLFEKF-SMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 139 AMN 141
MN
Sbjct: 117 TMN 119
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 58.8 bits (136), Expect = 4e-09
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 23 GEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM-----QHER 77
G+ G+ FV F EEA A+ L+ I GT + E A + QH+
Sbjct: 189 GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKA 248
Query: 78 E-------FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
E +++V +L VDD L + F S Y +I +AKV+ D +G +KG+GFV F
Sbjct: 249 ERMQKYQGVNLYVKNLDETVDDDGLKKQFES-YGNITSAKVMTDENGRSKGFGFVCFEKP 307
Query: 131 DEQRNALYAMNGYCGLGTKPLKICTAVPK 159
+E +A+ MN + +KPL + A K
Sbjct: 308 EEATSAVTEMNSKM-VCSKPLYVAIAQRK 335
Score = 41.9 bits (94), Expect = 5e-04
Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 30/176 (17%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTD---EEAIDAMH--KLNGKPIPGTF----PVVR--- 59
L+++V R+ T GYA+V+FQ E A+D M+ L+GKP+ + P +R
Sbjct: 59 LSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSG 118
Query: 60 ----FRLN-----TASRETRANMQHE-----REFS-VWVGDLSPDVDDYSLYRVFASKYT 104
F N + RA E ++F+ V+V + + +L ++FA K+
Sbjct: 119 AGNIFIKNLDKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFA-KFG 177
Query: 105 SIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTK-PLKICTAVPK 159
+I + +V + G +KG+GFV F N +E A+ A++ GT L +C A K
Sbjct: 178 NITSCEV-MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKK 232
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
S++VGDL PDV++ L+ F S + + +V DN + + GY +V F + A+
Sbjct: 33 SLYVGDLHPDVNESILFEKF-SAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 139 AMNGYCGLGTKPLKI 153
MN + L KP++I
Sbjct: 92 TMN-FEALHGKPMRI 105
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 51
+ KVM ++ G G+ FV F+ EEA A+ ++N K +
Sbjct: 285 SAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMNSKMV 322
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 57.6 bits (133), Expect = 9e-09
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
K++R+K TG+ GY FV++ +E+A+ A+ NG + V + R +
Sbjct: 72 KLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSY--------ARPSND 123
Query: 75 HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQ 133
+ +++V + + + L +F + I T++++ DN +G +KG GFVRF +DE
Sbjct: 124 QIKGSNLYVSGIPKSMTLHELESIF-RPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEA 182
Query: 134 RNALYAMNGYCGLGTKPLKICTAVPKPKSN 163
A+ +NG G P SN
Sbjct: 183 DVAIKTLNGSIPSGCSEQITVKFANNPASN 212
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 79 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALY 138
+ ++V +LS D DD L+++F S++ +I K++ D + KGY FV N E NA+
Sbjct: 374 YCLFVYNLSSDTDDTLLWQLF-SQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 139 AMNGYCGLGTKPLKI 153
++NG L K L++
Sbjct: 433 SLNG-TNLAGKTLQV 446
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASR 67
VK++R+ T + GYAFV EA +AM LNG + G V F+ +T R
Sbjct: 403 VKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSSTPYR 455
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 68 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVR 126
+ ++ + R F V+VGDLS +VD+ L F + + AKVI D N+ +KGYGFV
Sbjct: 11 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRDTNTTKSKGYGFVS 69
Query: 127 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
+ +E A+ MNG LG + ++ A KP
Sbjct: 70 YPKREEAERAIEQMNGQ-WLGRRTIRTNWATRKP 102
Score = 37.5 bits (83), Expect = 0.011
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
KV+R+ T + GY FV + EEA A+ ++NG+ + + + + +
Sbjct: 52 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHY 111
Query: 75 HEREF------------SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTK 120
+E+ + SV+VG+++ +D + + FAS + T ++ K+ +
Sbjct: 112 NEKSYDEIYNQTSGDNTSVYVGNIASLTED-EIRQGFASFGRITEVRIFKM--------Q 162
Query: 121 GYGFVRFGNEDEQRNALYAMN 141
GY FV+F N+D A+ MN
Sbjct: 163 GYAFVKFDNKDAAAKAIVQMN 183
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 68 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVR 126
+ ++ + R F V+VGDLS +VD+ L F + + AKVI D N+ +KGYGFV
Sbjct: 21 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRDTNTTKSKGYGFVS 79
Query: 127 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
+ +E A+ MNG LG + ++ A KP
Sbjct: 80 YPKREEAERAIEQMNGQ-WLGRRTIRTNWATRKP 112
Score = 37.5 bits (83), Expect = 0.011
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
KV+R+ T + GY FV + EEA A+ ++NG+ + + + + +
Sbjct: 62 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHY 121
Query: 75 HEREF------------SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTK 120
+E+ + SV+VG+++ +D + + FAS + T ++ K+ +
Sbjct: 122 NEKSYDEIYNQTSGDNTSVYVGNIASLTED-EIRQGFASFGRITEVRIFKM--------Q 172
Query: 121 GYGFVRFGNEDEQRNALYAMN 141
GY FV+F N+D A+ MN
Sbjct: 173 GYAFVKFDNKDAAAKAIVQMN 193
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 68 ETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVR 126
+ ++ + R F V+VGDLS +VD+ L F + + AKVI D N+ +KGYGFV
Sbjct: 92 QQQSKIDTTRHFHVFVGDLSSEVDNQKLREAF-QPFGDVSDAKVIRDTNTTKSKGYGFVS 150
Query: 127 FGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
+ +E A+ MNG LG + ++ A KP
Sbjct: 151 YPKREEAERAIEQMNGQ-WLGRRTIRTNWATRKP 183
Score = 37.5 bits (83), Expect = 0.011
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 23/141 (16%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQ 74
KV+R+ T + GY FV + EEA A+ ++NG+ + + + + +
Sbjct: 133 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHY 192
Query: 75 HEREF------------SVWVGDLSPDVDDYSLYRVFAS--KYTSIKTAKVILDNSGYTK 120
+E+ + SV+VG+++ +D + + FAS + T ++ K+ +
Sbjct: 193 NEKSYDEIYNQTSGDNTSVYVGNIASLTED-EIRQGFASFGRITEVRIFKM--------Q 243
Query: 121 GYGFVRFGNEDEQRNALYAMN 141
GY FV+F N+D A+ MN
Sbjct: 244 GYAFVKFDNKDAAAKAIVQMN 264
>Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 270
Score = 53.6 bits (123), Expect = 2e-07
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 79 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNEDEQRNAL 137
F V+VGDLS DV + L F +K+ + AKVI D + +KGYGFV F N+ NA+
Sbjct: 27 FHVFVGDLSKDVSNELLKSTF-TKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAI 85
Query: 138 YAMNG 142
MNG
Sbjct: 86 AGMNG 90
Score = 48.8 bits (111), Expect = 4e-06
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 15/149 (10%)
Query: 2 AAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFR 61
+ F + G+ A KV+R+ T + GY FV F + A +A+ +NGK I +
Sbjct: 45 STFTKFGEVSEA-KVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWA 103
Query: 62 LNTASRETRANMQHEREF--------SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 113
S E R + E+ F SV+VG++S D L +F S Y I ++
Sbjct: 104 ARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLF-STYGDIAEVRIF- 161
Query: 114 DNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
T+ Y FVR+ ++ A+ MNG
Sbjct: 162 ----KTQRYAFVRYEKKECATKAIMEMNG 186
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 76 EREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQR 134
E +F V+ GDL +V D L + F KY S + AKV+ ++ + +KGYGFV F + ++
Sbjct: 200 ENDFRVFCGDLGNEVSDELLAKAFR-KYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYV 258
Query: 135 NALYAMNGYCGLGTKPLKI 153
A+ M+G +G +P+K+
Sbjct: 259 RAMREMDGKY-VGNRPIKL 276
Score = 34.7 bits (76), Expect = 0.074
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 15 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPV 57
KV+R T + GY FV F+ E+ + AM +++GK + G P+
Sbjct: 233 KVVRESRTNKSKGYGFVSFRDSEDYVRAMREMDGKYV-GNRPI 274
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 12/150 (8%)
Query: 22 TGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG--------TFPVVRFRLNTASRETRANM 73
TG +AFV ++ E A+ A +NG+ + G F +R N + +M
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDM 198
Query: 74 ---QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
++ F V+V + PD+ + L VF + +K +G+G++ F N
Sbjct: 199 VQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNL 258
Query: 131 DEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
Q A+ MN + LG + L++ V P
Sbjct: 259 TSQSEAIAGMNMF-DLGGQYLRVGKCVTPP 287
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 46.0 bits (104), Expect = 3e-05
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 12/150 (8%)
Query: 22 TGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG--------TFPVVRFRLNTASRETRANM 73
TG +AFV ++ E A+ A +NG+ + G F +R N + +M
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDM 198
Query: 74 ---QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
++ F V+V + PD+ + L VF + +K +G+G++ F N
Sbjct: 199 VQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNL 258
Query: 131 DEQRNALYAMNGYCGLGTKPLKICTAVPKP 160
Q A+ MN + LG + L++ V P
Sbjct: 259 TSQSEAIAGMNMF-DLGGQYLRVGKCVTPP 287
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
++++ L D D L FA + I +AKV +D + +K +GFV + N NA+
Sbjct: 336 NLFIYHLPQDFGDSDLINTFAP-FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 394
Query: 139 AMNGYCGLGTKPLKI 153
AMNG+ +G+K LK+
Sbjct: 395 AMNGF-QIGSKRLKV 408
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
++++ L D D L FA + I +AKV +D + +K +GFV + N NA+
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAP-FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 558
Query: 139 AMNGYCGLGTKPLKI 153
AMNG+ +G+K LK+
Sbjct: 559 AMNGF-QIGSKRLKV 572
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
++++ L D D L FA + I +AKV +D + +K +GFV + N NA+
Sbjct: 500 NLFIYHLPQDFGDSDLINTFAP-FGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAIS 558
Query: 139 AMNGYCGLGTKPLKI 153
AMNG+ +G+K LK+
Sbjct: 559 AMNGF-QIGSKRLKV 572
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 42.7 bits (96), Expect = 3e-04
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 11/131 (8%)
Query: 22 TGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG--------TFPVVRFRLNTASRETRANM 73
TG +AFV ++ E A+ A +NG+ + G F +R N + +M
Sbjct: 139 TGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMFQEMRLPQNMPQAQPIIDM 198
Query: 74 ---QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNE 130
++ F V+V + PD+ + L VF + +K +G+G++ F N
Sbjct: 199 VQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNL 258
Query: 131 DEQRNALYAMN 141
Q A+ MN
Sbjct: 259 TSQSEAIAGMN 269
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALY 138
SV+VG++S DV + ++ +F SK ++ + K++ D +G KGYGF+ F + A+
Sbjct: 19 SVFVGNISYDVSEDTIRSIF-SKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 139 AMNGY 143
+NGY
Sbjct: 78 NLNGY 82
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
F++ G L++K++ ++ TG+P GY F+ F + A A+ LNG + G
Sbjct: 38 FSKAGN-VLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNLNGYELSG 86
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 138
++++ L + D L ++FA + I +AKV +D + +K +GFV + N + A+
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAP-FGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAIT 488
Query: 139 AMNGYCGLGTKPLKICTAVPKPKS 162
AMNG+ +G K LK+ P+ +S
Sbjct: 489 AMNGF-QIGMKRLKVQLKRPRNES 511
Score = 35.5 bits (78), Expect = 0.043
Identities = 28/129 (21%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG-KPIPGTFPVVRFR-LNTASRETRANM 73
++++K+TG G AF+ + + A+ L+ K +PG ++ + +T SR
Sbjct: 60 ILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQVKPADTDSRPASPKD 119
Query: 74 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 133
+ + + +++G LS + + +FA+ + + V+ G +KG FV++ + +
Sbjct: 120 KMDDK-KLFIGMLSKQQSEDEVRALFAT-FGELDEVTVLRGADGASKGCAFVKYKHGLDA 177
Query: 134 RNALYAMNG 142
A+ A++G
Sbjct: 178 HMAISALHG 186
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 138
++++ L + D L ++FA + I +AKV +D + +K +GFV + N + A+
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAP-FGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAIT 488
Query: 139 AMNGYCGLGTKPLKICTAVPKPKS 162
AMNG+ +G K LK+ P+ +S
Sbjct: 489 AMNGF-QIGMKRLKVQLKRPRNES 511
Score = 35.5 bits (78), Expect = 0.043
Identities = 28/129 (21%), Positives = 64/129 (49%), Gaps = 4/129 (3%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG-KPIPGTFPVVRFR-LNTASRETRANM 73
++++K+TG G AF+ + + A+ L+ K +PG ++ + +T SR
Sbjct: 60 ILKDKYTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQVKPADTDSRPASPKD 119
Query: 74 QHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQ 133
+ + + +++G LS + + +FA+ + + V+ G +KG FV++ + +
Sbjct: 120 KMDDK-KLFIGMLSKQQSEDEVRALFAT-FGELDEVTVLRGADGASKGCAFVKYKHGLDA 177
Query: 134 RNALYAMNG 142
A+ A++G
Sbjct: 178 HMAISALHG 186
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.9 bits (84), Expect = 0.008
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 19/131 (14%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDL 86
G+AF+ T A A ++G+ I G VRF ++ A ++ V +L
Sbjct: 151 GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGA--------------AIRVKEL 196
Query: 87 SPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGL 146
SP V + LY F S + ++ A I+D G G G V F + A+ A+ L
Sbjct: 197 SPTVSNEMLYHAF-SHFGDVERAVHIVDEKGRPTGEGIVEFERKPNCNEAMAAIRDKVFL 255
Query: 147 GT---KPLKIC 154
T KPL IC
Sbjct: 256 LTASPKPL-IC 265
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.9 bits (84), Expect = 0.008
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 19/131 (14%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDL 86
G+AF+ T A A ++G+ I G VRF ++ A ++ V +L
Sbjct: 151 GFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHGA--------------AIRVKEL 196
Query: 87 SPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNGYCGL 146
SP V + LY F S + ++ A I+D G G G V F + A+ A+ L
Sbjct: 197 SPTVSNEMLYHAF-SHFGDVERAVHIVDEKGRPTGEGIVEFERKPNCNEAMAAIRDKVFL 255
Query: 147 GT---KPLKIC 154
T KPL IC
Sbjct: 256 LTASPKPL-IC 265
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 47
F ++G R + + + R+K TG P G+AFV F++ ++A A+ +LN
Sbjct: 196 FGKIG-RVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELN 238
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 138
++++ L P+ +D L R SKY +I + K I+D + KGYGFV F + A+
Sbjct: 108 NLYIRGLMPNTND-DLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVD 166
Query: 139 AMN 141
+N
Sbjct: 167 GLN 169
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/130 (18%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
+ K + +K T GY FV F++ + A A+ LN + + ++ +
Sbjct: 135 STKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQ-------------AQMAKLQ 181
Query: 73 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 132
Q + ++++ +L D + L +K+ + + +++ ++G GF R ++++
Sbjct: 182 QQEQDPTNLYIANLPLDFTEQML-ETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEK 240
Query: 133 QRNALYAMNG 142
+ A+NG
Sbjct: 241 CEVIISALNG 250
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 36.7 bits (81), Expect = 0.018
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 80 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS-GYTKGYGFVRFGNEDEQRNALY 138
++++ L P+ +D L R SKY +I + K I+D + KGYGFV F + A+
Sbjct: 82 NLYIRGLMPNTND-DLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVD 140
Query: 139 AMN 141
+N
Sbjct: 141 GLN 143
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/130 (18%), Positives = 58/130 (44%), Gaps = 14/130 (10%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
+ K + +K T GY FV F++ + A A+ LN + + ++ +
Sbjct: 109 STKAIMDKATNNCKGYGFVDFESPQAAAAAVDGLNTEGVQ-------------AQMAKLQ 155
Query: 73 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDE 132
Q + ++++ +L D + L +K+ + + +++ ++G GF R ++++
Sbjct: 156 QQEQDPTNLYIANLPLDFTEQML-ETELNKFGMVISTRILRTPDNQSRGVGFARMDSKEK 214
Query: 133 QRNALYAMNG 142
+ A+NG
Sbjct: 215 CEVIISALNG 224
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.018
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAM----HKLNGKPIPGTFPVVRFRLNTASRETRA 71
VMR+ T G+ FV F E AM H ++GK + V R N + +
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN----RSES 109
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT-KGYGFVRFGNE 130
N+ +R ++V + D + L F +KY ++ +++ILD + +G+GFV F +
Sbjct: 110 NVSTKR---LYVSGVREDHTEDMLTEYF-TKYGTVTKSEIILDKATQKPRGFGFVTFDDH 165
Query: 131 D 131
D
Sbjct: 166 D 166
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 36.7 bits (81), Expect = 0.018
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAM----HKLNGKPIPGTFPVVRFRLNTASRETRA 71
VMR+ T G+ FV F E AM H ++GK + V R N + +
Sbjct: 16 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN----RSES 71
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT-KGYGFVRFGNE 130
N+ +R ++V + D + L F +KY ++ +++ILD + +G+GFV F +
Sbjct: 72 NVSTKR---LYVSGVREDHTEDMLTEYF-TKYGTVTKSEIILDKATQKPRGFGFVTFDDH 127
Query: 131 D 131
D
Sbjct: 128 D 128
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 36.7 bits (81), Expect = 0.018
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAM----HKLNGKPIPGTFPVVRFRLNTASRETRA 71
VMR+ T G+ FV F E AM H ++GK + V R N + +
Sbjct: 16 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN----RSES 71
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT-KGYGFVRFGNE 130
N+ +R ++V + D + L F +KY ++ +++ILD + +G+GFV F +
Sbjct: 72 NVSTKR---LYVSGVREDHTEDMLTEYF-TKYGTVTKSEIILDKATQKPRGFGFVTFDDH 127
Query: 131 D 131
D
Sbjct: 128 D 128
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 36.7 bits (81), Expect = 0.018
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAM----HKLNGKPIPGTFPVVRFRLNTASRETRA 71
VMR+ T G+ FV F E AM H ++GK + V R N + +
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN----RSES 109
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT-KGYGFVRFGNE 130
N+ +R ++V + D + L F +KY ++ +++ILD + +G+GFV F +
Sbjct: 110 NVSTKR---LYVSGVREDHTEDMLTEYF-TKYGTVTKSEIILDKATQKPRGFGFVTFDDH 165
Query: 131 D 131
D
Sbjct: 166 D 166
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 36.7 bits (81), Expect = 0.018
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 16 VMRNKFTGEPAGYAFVHFQTDEEAIDAM----HKLNGKPIPGTFPVVRFRLNTASRETRA 71
VMR+ T G+ FV F E AM H ++GK + V R N + +
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHIIDGKTVDPKRAVPRDDKN----RSES 109
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT-KGYGFVRFGNE 130
N+ +R ++V + D + L F +KY ++ +++ILD + +G+GFV F +
Sbjct: 110 NVSTKR---LYVSGVREDHTEDMLTEYF-TKYGTVTKSEIILDKATQKPRGFGFVTFDDH 165
Query: 131 D 131
D
Sbjct: 166 D 166
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 36.7 bits (81), Expect = 0.018
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM 73
V+++ + TG G +V F DEE++ LNG+ + G ++ + A R AN
Sbjct: 54 VRIITDSRTGRSKGICYVEFW-DEESVPLGLALNGQRLMGA--PLQIQRTCAERNRAANS 110
Query: 74 Q-----------HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 122
++ V V +L P +D+ + +F S + I+ + +D++ +G+
Sbjct: 111 SVASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFES-FGRIEKIDLEVDSNRENRGF 169
Query: 123 GFVRFGNEDEQRNALYAMNGY 143
+ F N D+ + + +N +
Sbjct: 170 ATITFRNADDAQKSCEQLNNF 190
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 36.7 bits (81), Expect = 0.018
Identities = 31/141 (21%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANM 73
V+++ + TG G +V F DEE++ LNG+ + G ++ + A R AN
Sbjct: 199 VRIITDSRTGRSKGICYVEFW-DEESVPLGLALNGQRLMGA--PLQIQRTCAERNRAANS 255
Query: 74 Q-----------HEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGY 122
++ V V +L P +D+ + +F S + I+ + +D++ +G+
Sbjct: 256 SVASTLGFVAPGNKGPTHVLVENLHPKIDEKMIRDIFES-FGRIEKIDLEVDSNRENRGF 314
Query: 123 GFVRFGNEDEQRNALYAMNGY 143
+ F N D+ + + +N +
Sbjct: 315 ATITFRNADDAQKSCEQLNNF 335
>U39997-3|AAK68389.1| 498|Caenorhabditis elegans Human daz (deleted
in azoospermia)homolog protein 1 protein.
Length = 498
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
++VG + L F K+ ++K K++ G +KGYGF+ F ED+
Sbjct: 68 IFVGGFPTSTTETELREHF-EKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLT 126
Query: 141 NGYCGLGTKPLKICTAVPKPKSN 163
++ L + A+ K SN
Sbjct: 127 PKQLEFRSRKLNLGPAIRKINSN 149
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
VK++++ G+ GY F+ F+T+++A + + KL K + F + L A R+ +N
Sbjct: 95 VKMVKS-LDGQSKGYGFITFETEDQA-EEIRKLTPKQL--EFRSRKLNLGPAIRKINSN 149
>AB025253-1|BAA88577.1| 499|Caenorhabditis elegans DAZ-1 protein.
Length = 499
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAM 140
++VG + L F K+ ++K K++ G +KGYGF+ F ED+
Sbjct: 69 IFVGGFPTSTTETELREHF-EKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEEIRKLT 127
Query: 141 NGYCGLGTKPLKICTAVPKPKSN 163
++ L + A+ K SN
Sbjct: 128 PKQLEFRSRKLNLGPAIRKINSN 150
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRAN 72
VK++++ G+ GY F+ F+T+++A + + KL K + F + L A R+ +N
Sbjct: 96 VKMVKS-LDGQSKGYGFITFETEDQA-EEIRKLTPKQL--EFRSRKLNLGPAIRKINSN 150
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 35.9 bits (79), Expect = 0.032
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 79 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 137
FSV+VG+ + L F+S I +++ D +G +G+ F+ F E + A+
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSS-IGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAV 63
Query: 138 YAMNGYCGLGTKPLKI 153
MNG +PL++
Sbjct: 64 EQMNG-AEFNGRPLRV 78
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 4 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
F+ +GQ V+++ ++ TG P G+AF+ F + A A+ ++NG G
Sbjct: 25 FSSIGQIN-NVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNG 73
>Z66521-9|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 35.5 bits (78), Expect = 0.043
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRF 60
G+ FV FQ +A DA+H LNGK + G ++ F
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILEF 69
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 35.1 bits (77), Expect = 0.056
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNALYA 139
++VG + DV + +L +F K I ++++D SG ++GY FV + N+++ A
Sbjct: 202 IYVGHIPTDVFEDTLVPLF-EKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKT 260
Query: 140 MNGYCGLGTKPLKICTAV 157
+G+ KPLK+ ++
Sbjct: 261 YDGHEISTGKPLKVNVSI 278
Score = 33.1 bits (72), Expect = 0.23
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 28 YAFVHFQTDEEAIDAMHKLNGKPIPGT 54
YAF+HF ++ + AM + NGK + GT
Sbjct: 412 YAFIHFNERDDCLKAMEEWNGKELEGT 438
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 34.7 bits (76), Expect = 0.074
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQH 75
G+AFV F+ +A DA H L+GK + G+ +R + A + R N +H
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGS--SMRLVVEMARGKPRGNDRH 82
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 34.7 bits (76), Expect = 0.074
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQH 75
G+AFV F+ +A DA H L+GK + G+ +R + A + R N +H
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGS--SMRLVVEMARGKPRGNDRH 82
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 34.7 bits (76), Expect = 0.074
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQH 75
G+AFV F+ +A DA H L+GK + G+ +R + A + R N +H
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGS--SMRLVVEMARGKPRGNDRH 82
>AL117204-23|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 34.7 bits (76), Expect = 0.074
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 72 NMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGNE 130
N H R+ +++VG + DV + L F + + + +D SG +G+GFV F
Sbjct: 4 NFPHNRKRTLYVGGFTEDVTEKVLMAAFIP-FGDVVAISIPMDYESGKHRGFGFVEFDMA 62
Query: 131 DEQRNALYAMN 141
++ A+ MN
Sbjct: 63 EDAAMAIDNMN 73
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V+++ ++ TG P G+AFV F + A A+ +LNG G
Sbjct: 35 VRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNG 74
Score = 31.1 bits (67), Expect = 0.92
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 79 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 137
FSV+VG++ + + FA+ + +++ D +G +G+ FV F E + A+
Sbjct: 6 FSVYVGNVPYQGTEEEIGNYFAA-VGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAV 64
Query: 138 YAMNG 142
+NG
Sbjct: 65 EQLNG 69
>Z81120-1|CAB03342.1| 207|Caenorhabditis elegans Hypothetical
protein T12D8.2 protein.
Length = 207
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 115 NSGYTKGYGFVRFGNEDEQRNALYAMNGYCGLGTKPLKICTAVPKPKSN 163
+SG KG+ +V F NE + A+ +NG G + LK+ A + +S+
Sbjct: 48 DSGSFKGFAYVTFENEQQMNTAISGLNG-ADFGNRVLKVNRAQQRDRSD 95
>U14635-1|AAC46657.2| 448|Caenorhabditis elegans Hypothetical
protein C27H5.3 protein.
Length = 448
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
+K+ ++ TGEP G + F A A+ NG+P PG
Sbjct: 236 IKIYTDRNTGEPKGECMITFVDASAAQQAITMYNGQPFPG 275
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPG 53
G+ FV F +A DA+H LNGK + G
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGG 63
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPG 53
G+ FV F +A DA+H LNGK + G
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGG 63
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 27 GYAFVHFQTDEEAIDAMHKLNGKPIPG 53
G+ FV F +A DA+H LNGK + G
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGG 63
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V+++ ++ TG P G+AFV F + A A+ + NG G
Sbjct: 33 VRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNG 72
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 79 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN-SGYTKGYGFVRFGNEDEQRNAL 137
FSV+VG+ + L F S+ ++ +++ D +G +G+ FV F E + A+
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYF-SQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAV 62
Query: 138 YAMNG 142
NG
Sbjct: 63 DQFNG 67
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 31.1 bits (67), Expect = 0.92
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 13 AVKVMRNKFTGEPAGYAFVHFQTD 36
AV+++R+K TG+ G+AFV+F+ D
Sbjct: 275 AVRIVRDKDTGKGKGFAFVNFKQD 298
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGN 129
+++G LS D D L F S++ + A VI D N+ +++G+GFV F +
Sbjct: 51 LFIGGLSHDTTDEQLGNYF-SQWGPVVDAIVIRDPNTKHSRGFGFVTFAS 99
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGN 129
+++G LS D D L F S++ + A VI D N+ +++G+GFV F +
Sbjct: 71 LFIGGLSHDTTDEQLGNYF-SQWGPVVDAIVIRDPNTKHSRGFGFVTFAS 119
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.92
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NSGYTKGYGFVRFGN 129
+++G LS D D L F S++ + A VI D N+ +++G+GFV F +
Sbjct: 72 LFIGGLSHDTTDEQLGNYF-SQWGPVVDAIVIRDPNTKHSRGFGFVTFAS 120
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 25 PAGYAFVHFQTDEEAIDAMHKLNGKPI 51
P G+AFV F+ A DA+ LNGK I
Sbjct: 63 PPGFAFVTFKRTVHAFDAVKYLNGKKI 89
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 1 MAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
+A F++ G+ + + ++R+K TG+ G+AF+ ++ I A+ NG
Sbjct: 55 IAVFSQYGE-VMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNG 101
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 12 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 48
L ++V RN+ TG G+A+V F A A +NG
Sbjct: 59 LRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNG 95
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V + R+K++ + G+ FV F +A A+ + +GK + G
Sbjct: 48 VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 14 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPG 53
V + R+K++ + G+ FV F +A A+ + +GK + G
Sbjct: 48 VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87
>CU457741-8|CAM36349.1| 544|Caenorhabditis elegans Hypothetical
protein C42C1.8 protein.
Length = 544
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 98 VFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMN---GYCGLGTKPLKIC 154
++ K+ + +TA ++L N G GF+ L+ ++ G+CGL P+ +
Sbjct: 352 IYVDKHKNYRTAMIVLMNFAVIFGVGFLWMSKVPNMSLILFFISGAFGFCGLAAYPVGLE 411
Query: 155 TAV 157
A+
Sbjct: 412 LAI 414
>AF043695-17|AAB97549.1| 544|Caenorhabditis elegans Hypothetical
protein C42C1.8 protein.
Length = 544
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 98 VFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMN---GYCGLGTKPLKIC 154
++ K+ + +TA ++L N G GF+ L+ ++ G+CGL P+ +
Sbjct: 352 IYVDKHKNYRTAMIVLMNFAVIFGVGFLWMSKVPNMSLILFFISGAFGFCGLAAYPVGLE 411
Query: 155 TAV 157
A+
Sbjct: 412 LAI 414
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 97 RVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMN 141
R F KY I A + G +G+ FV F +E NAL N
Sbjct: 20 RKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKSN 64
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 66 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTS-IKTAKVI--LDNSGYTK-- 120
S + ++ + E +++V +L+ D D SL +F +Y +K+A++ L+ + TK
Sbjct: 628 SSKKQSEKEIESGSTLFVKNLAFDTTDGSLEFLFRKRYGDLVKSAQISKKLNPAEPTKPL 687
Query: 121 --GYGFVRFGNEDEQRNALYAMNG 142
G+GFV+F + + AL M G
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQG 711
>Z83119-2|CAB05579.2| 608|Caenorhabditis elegans Hypothetical
protein R05H10.2 protein.
Length = 608
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 81 VWVGDLSPDVDDYSLYRVFASKYTSIKTAKVI-LDNSGYTKGYGFVRFGNEDEQRNALYA 139
V++ +LS D + L + SK+ I A + +SG++KG FV F E N +
Sbjct: 265 VFLRNLSYDTKE-ELIKEELSKFGKIDLAIICKYKDSGHSKGTAFVHFSTPIEASNCIEG 323
Query: 140 MNGYCGLGTKPLKICTAVPKPKS 162
+ + + +K A+P+ ++
Sbjct: 324 VEDGVIIDNRLVKANLAIPRKEA 346
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 25 PAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASR 67
P G+AFV + +A DA+ L+G I G R L+T R
Sbjct: 38 PPGFAFVEYDDVRDAEDAVRALDGSRICGV--RARVELSTGQR 78
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 25 PAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASR 67
P G+AFV + +A DA+ L+G I G R L+T R
Sbjct: 38 PPGFAFVEYDDVRDAEDAVRALDGSRICGV--RARVELSTGQR 78
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 25 PAGYAFVHFQTDEEAIDAMHKLNGKPIPGTFPVVRFRLNTASR 67
P G+AFV + +A DA+ L+G I G R L+T R
Sbjct: 38 PPGFAFVEYDDVRDAEDAVRALDGSRICGV--RARVELSTGQR 78
>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
protein 36 protein.
Length = 1249
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 5 NRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKL---NGKPIPGTFPVVRFR 61
NR+ QR +A+ V NKF Y + + TD +A+ K+ +G + +P+ RF
Sbjct: 1009 NRIAQRAMALLV-ENKF------YTKLTY-TDNQAVCKAEKVVTTSGNRLRPFYPIFRFL 1060
Query: 62 LNTASRETRANMQHEREFSVWVGDL 86
+ T + R Q F +W+ ++
Sbjct: 1061 MQTFNFMVRLASQISGGFLIWLPNI 1085
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 26 AGYAFVHFQTDEEAIDAMHKLNGKPI 51
A YAFV FQT ++AI A + +PI
Sbjct: 208 AAYAFVMFQTVDQAIQAKAEEQDRPI 233
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 26 AGYAFVHFQTDEEAIDAMHKLNGKPI 51
A YAFV FQT ++AI A + +PI
Sbjct: 208 AAYAFVMFQTVDQAIQAKAEEQDRPI 233
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 26 AGYAFVHFQTDEEAIDAMHKLNGKPI 51
A YAFV FQT ++AI A + +PI
Sbjct: 185 AAYAFVMFQTVDQAIQAKAEEQDRPI 210
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.134 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,949,191
Number of Sequences: 27539
Number of extensions: 270870
Number of successful extensions: 723
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 145
length of query: 280
length of database: 12,573,161
effective HSP length: 80
effective length of query: 200
effective length of database: 10,370,041
effective search space: 2074008200
effective search space used: 2074008200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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