GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001940-TA|BGIBMGA001940-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (280 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   4.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   5.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.2  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 92  DYSLYRVFASKYTSIKTAKV-ILDNSGYTKG 121
           DYSLY +F ++  + +T    + DN G + G
Sbjct: 359 DYSLYEIFPARAPNSETKLAEMRDNYGISAG 389


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 103 YTSIKTAKVILDNSGYTK--GYGFVR 126
           Y  +K   ++LD+ GY K   +GF +
Sbjct: 489 YRDLKPENLLLDSQGYVKLVDFGFAK 514


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 223 TTPAVAVKTQTDDLVLVDHKKPIDVDH 249
           T P  A K    DL   +H K I++ H
Sbjct: 147 TVPVCAPKLHVFDLKTSNHLKQIEIPH 173


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 127 FGNEDEQRNALYAMNGYCGLGTKP 150
           FG+E E R   Y ++GY   G +P
Sbjct: 1   FGDEHEYRLTKYLLDGY-DAGVRP 23


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 93  YSLYRVFASKYTSIKTAKVILDNSGYTKGYGFVRFGNEDEQRNALYAMNG 142
           + ++R    +   +KT K I   S  T+  G V    E E+R   Y   G
Sbjct: 497 FCIFRTANGRGWGVKTMKTIKKGSFVTQYVGEVITNEEAEKRGKEYDAAG 546


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 115 NSGYTKGYGFVRFGNEDEQRNALYA 139
           N  +  G G  +FG ED + +  +A
Sbjct: 588 NRNFMPGRGISKFGGEDVRESEAFA 612


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 14/60 (23%), Positives = 21/60 (35%)

Query: 36  DEEAIDAMHKLNGKPIPGTFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSL 95
           D++  D +   NGKP  G    V     T   +     +   E+ +    L P    Y L
Sbjct: 398 DDDDDDDVEAANGKPAEGMLTDVFHVQETDKYDAYYGNRFSGEYEIPAHGLPPSATRYDL 457


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)

Query: 86  LSPDVDDYSLYRVFASKYTSIKTAKVI 112
           L  D+++  + R      TS+KT+K++
Sbjct: 151 LHHDIENAHIRRTLHMNRTSLKTSKIV 177


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,146
Number of Sequences: 429
Number of extensions: 3024
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 280
length of database: 140,377
effective HSP length: 57
effective length of query: 223
effective length of database: 115,924
effective search space: 25851052
effective search space used: 25851052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)