Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001939-TA|BGIBMGA001939-PA|undefined
         (789 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    29   0.093
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    26   1.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   4.6  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 29.5 bits (63), Expect = 0.093
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 539 KEPSKFHPSNIMESLAEKENDKNISQNPSYDTNRKTLNVTDTNNSKHDTLRMKIEN 594
           K P   +P+    SL E +  K  S+ P+ DTN  T  V D N S   ++    +N
Sbjct: 57  KNPPNLNPAVQGSSLTEGKRSKR-SKRPNGDTNGDTSQVDDQNESLEASVNENSKN 111


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 95   LEQHPKKDIENANKNFLLDQWIAKIGVP 122
            L  HP+ ++   N NF ++ WI++ GVP
Sbjct: 1606 LYYHPEDEVVFYNANFSINYWISE-GVP 1632


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 461 DAIHLEPI-MEELDDLTDMDITNKKRLNSESSLVATI 496
           + IHL+   +E L+    M++ + KRLN + + +ATI
Sbjct: 119 EQIHLDDNRIESLERRAFMNLKSLKRLNLKGNKIATI 155


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,559
Number of Sequences: 317
Number of extensions: 7488
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 789
length of database: 114,650
effective HSP length: 62
effective length of query: 727
effective length of database: 94,996
effective search space: 69062092
effective search space used: 69062092
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 47 (23.0 bits)