Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001939-TA|BGIBMGA001939-PA|undefined
(789 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein ... 37 0.060
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100... 34 0.32
At1g25470.2 68414.m03163 AP2 domain-containing transcription fac... 32 1.3
At1g25470.1 68414.m03162 AP2 domain-containing transcription fac... 32 1.3
At1g35940.1 68414.m04463 AT hook motif-containing protein-relate... 32 1.7
At3g18300.1 68416.m02329 expressed protein ; expression supporte... 31 2.2
At3g11470.2 68416.m01398 4'-phosphopantetheinyl transferase fami... 31 2.2
At3g11470.1 68416.m01399 4'-phosphopantetheinyl transferase fami... 31 2.2
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot... 31 3.0
At3g47980.1 68416.m05231 integral membrane HPP family protein co... 31 3.9
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma... 31 3.9
At2g37070.1 68415.m04549 expressed protein 31 3.9
At1g33050.2 68414.m04070 expressed protein 31 3.9
At1g33050.1 68414.m04069 expressed protein 31 3.9
At5g16880.3 68418.m01977 VHS domain-containing protein / GAT dom... 30 5.2
At5g16880.2 68418.m01979 VHS domain-containing protein / GAT dom... 30 5.2
At5g16880.1 68418.m01978 VHS domain-containing protein / GAT dom... 30 5.2
At5g10660.1 68418.m01234 calmodulin-binding protein-related cont... 30 5.2
At1g79450.2 68414.m09260 LEM3 (ligand-effect modulator 3) family... 30 5.2
At1g79450.1 68414.m09259 LEM3 (ligand-effect modulator 3) family... 30 5.2
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 30 5.2
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 30 6.8
At4g04400.1 68417.m00634 hypothetical protein contains Pfam prof... 30 6.8
At1g20640.2 68414.m02584 RWP-RK domain-containing protein simila... 30 6.8
At1g20640.1 68414.m02583 RWP-RK domain-containing protein simila... 30 6.8
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4... 30 6.8
At1g16360.1 68414.m01957 LEM3 (ligand-effect modulator 3) family... 30 6.8
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain... 29 9.0
At1g07990.1 68414.m00871 SIT4 phosphatase-associated family prot... 29 9.0
>At3g13810.1 68416.m01744 zinc finger (C2H2 type) family protein
similar to finger protein pcp1 GB:S48856 from [Solanum
tuberosum] contains Pfam domain, PF00096: Zinc finger,
C2H2 type
Length = 513
Score = 36.7 bits (81), Expect = 0.060
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 522 PQPTASNL-DPILSEALWKEPSKFH---PSNIMESLAEKENDKNISQNPSYDTNRKTLNV 577
PQ +N +P+L P H P+ + S + ++ NI + +DTN N
Sbjct: 238 PQNQNNNQPNPLLIHQSASHPHHHHQTQPTINVSSSSSSSHNHNIINSLHFDTNNGNTNN 297
Query: 578 TDTNNSKHDTLRMKIENNFNNHSTNYTRS 606
++ +N+ T MK E N+H NY S
Sbjct: 298 SNNSNNHLHTFPMKKEQQSNDHIMNYHHS 326
>At1g28400.1 68414.m03492 expressed protein similar to E6
(GI:1000090) [Gossypium barbadense]
Length = 335
Score = 34.3 bits (75), Expect = 0.32
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 558 NDKNISQNPSYDTNRKTLNVTDTNNSKHDTLRMKIENNFNNHSTNYTRSKMKNLK--TLP 615
N++ + N YD N K + NN+K+D K E N NN++ NY +N+K + P
Sbjct: 149 NEEFNNNNNKYDANFKE----EFNNNKYDENYAKEEFNNNNNNNNYNYKYDENVKEESFP 204
Query: 616 DPDVSNK 622
+ + NK
Sbjct: 205 ENNEDNK 211
>At1g25470.2 68414.m03163 AP2 domain-containing transcription
factor, putative similar to putative AP2 domain
transcription factor GI:6553944 from [Arabidopsis
thaliana]
Length = 287
Score = 32.3 bits (70), Expect = 1.3
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 169 KKILICSPTELTLKLSAGENIESNIDEITSSNLNSNKRRAI-C-SSDDLSDDLTNMNFDV 226
+K + E S+G + S++ +TS L S ++ C S+DDLS + T++N DV
Sbjct: 117 EKAYVDKKVEYDALASSGSAVSSSVVTVTSQCLRSPTSASVSCVSADDLSKEKTSLNKDV 176
Query: 227 CA 228
A
Sbjct: 177 AA 178
>At1g25470.1 68414.m03162 AP2 domain-containing transcription
factor, putative similar to putative AP2 domain
transcription factor GI:6553944 from [Arabidopsis
thaliana]
Length = 287
Score = 32.3 bits (70), Expect = 1.3
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 169 KKILICSPTELTLKLSAGENIESNIDEITSSNLNSNKRRAI-C-SSDDLSDDLTNMNFDV 226
+K + E S+G + S++ +TS L S ++ C S+DDLS + T++N DV
Sbjct: 117 EKAYVDKKVEYDALASSGSAVSSSVVTVTSQCLRSPTSASVSCVSADDLSKEKTSLNKDV 176
Query: 227 CA 228
A
Sbjct: 177 AA 178
>At1g35940.1 68414.m04463 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; contains weak hit to
PF02178: AT hook motif
Length = 1678
Score = 31.9 bits (69), Expect = 1.7
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 147 TPQTLKQDNQGQNISNKINCKHKKILICSPTELTLKLSAGENIESNIDEITSSNLNSNKR 206
TP T N GQ++SN +C + +P ++ + S N+++ ++ ++S N +
Sbjct: 137 TPATAYTLNTGQDLSNPYSCISNQTQ--TPV-MSTEYSHVRNLQAEFEKASTSATNP-RA 192
Query: 207 RAICSSDDLSDD--LTNMNFD 225
A +SD SDD + NM FD
Sbjct: 193 EAKINSDTSSDDENMANMMFD 213
>At3g18300.1 68416.m02329 expressed protein ; expression supported
by MPSS
Length = 274
Score = 31.5 bits (68), Expect = 2.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 161 SNKINCKHKKILICSPTELTLKLSAGENIESNIDEITSSNLNSNKRRAI 209
S+ +NC KK LICS LT S G S + + N +S++R +
Sbjct: 158 SSSLNCDIKKSLICSFPRLTRSNSTGSVAISKREMLRDINKHSSQRHGV 206
>At3g11470.2 68416.m01398 4'-phosphopantetheinyl transferase family
protein contains Pfam profile PF01648:
4'-phosphopantetheinyl transferase superfamily
Length = 236
Score = 31.5 bits (68), Expect = 2.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 603 YTRSKMKNLKTLPDPDVSNKNIDLLWQL 630
Y+ ++K L TLPDP+V K LW L
Sbjct: 104 YSADEVKFLSTLPDPEVQRKEFIKLWTL 131
>At3g11470.1 68416.m01399 4'-phosphopantetheinyl transferase family
protein contains Pfam profile PF01648:
4'-phosphopantetheinyl transferase superfamily
Length = 300
Score = 31.5 bits (68), Expect = 2.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 603 YTRSKMKNLKTLPDPDVSNKNIDLLWQL 630
Y+ ++K L TLPDP+V K LW L
Sbjct: 168 YSADEVKFLSTLPDPEVQRKEFIKLWTL 195
>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
(PCAT2) contains Pfam domains PF02135: TAZ zinc finger
and PF00569: Zinc finger, ZZ type; identical to cDNA
p300/CBP acetyltransferase-related protein 2 GI:12597460
Length = 1691
Score = 31.1 bits (67), Expect = 3.0
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 538 WKEPSKFHPSNIMESLAEKENDKNISQNPSYDTNRKTLNVTDTNNSKHDTLR 589
+K+ +P IM+ A+ + I ++ +DT + L++ N+ ++DTLR
Sbjct: 1442 FKDKHALYPVEIMDIPADTRDKDEILESEFFDTRQAFLSLCQGNHYQYDTLR 1493
>At3g47980.1 68416.m05231 integral membrane HPP family protein
contains Pfam domain, PF04982: HPP family
Length = 252
Score = 30.7 bits (66), Expect = 3.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 519 WDSPQPTASNLDPILSEALWKEPSKFHPSNIMESLAEKENDKNISQN 565
W+S +P + + P LS+ +W F IM + + N K IS +
Sbjct: 87 WESWKPEKTTVAPSLSDVIWPAAGAFAAMAIMGRIDQMLNPKGISMS 133
>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
domain-containing protein contains Pfam profiles
PF00612: IQ calmodulin-binding motif, PF02179: BAG
(Apoptosis regulator Bcl-2 protein) domain
Length = 1043
Score = 30.7 bits (66), Expect = 3.9
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 9/127 (7%)
Query: 88 SYSIESTLEQHPKKDIENANKNF--LLDQWIAKIGVPTLSSGSFGNNGCD--ASGIEIYS 143
SY +E K+ N +N G T + G GN C+ + E S
Sbjct: 336 SYGKRKDVEASESKESSNEGRNLESCPSDLHRNEGQITQAKGKEGNFECNVLSDAEEKSS 395
Query: 144 VENTPQTLKQDNQGQNISNKINCKHKKILICSPTELTLKLSAGENIESNIDEITSSNLNS 203
V N P + +NI K++ H + PTE T +++ E ++S E +SS+ +
Sbjct: 396 VINIP-VANHLQEPRNIPVKLSENH----LPKPTEPTKRIAKNEPVKSTKKEQSSSSSEA 450
Query: 204 NKRRAIC 210
+K +C
Sbjct: 451 SKLPPVC 457
>At2g37070.1 68415.m04549 expressed protein
Length = 420
Score = 30.7 bits (66), Expect = 3.9
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 522 PQPTASNLD-PILSEALWKEPSKFHPSNIMESLAE--------KENDKNISQNPSYDTNR 572
P PT S LD P E + P + P + LA+ +E++ +IS+ PS NR
Sbjct: 57 PSPTTSTLDDPSSEEKMKPNPIRKRPGIRSQGLAKATKHPVASEEHNTSISR-PSTGLNR 115
Query: 573 KTLNVTDTNNSKHDTLRMKIENNFNNHSTNYTRSKMKNLKTLPDPDVS 620
+ ++ T + DT + K E N + + + P P VS
Sbjct: 116 PSSGLSKTKRASVDTNKAKQETNPKSSGGKEPLASRVPISRRPRPIVS 163
>At1g33050.2 68414.m04070 expressed protein
Length = 607
Score = 30.7 bits (66), Expect = 3.9
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 695 EKFEMKTHLNSDEENLCNTSESTSKTLDVMSSKNNYRSSDKV 736
EK + TH N+DE TS+S SKT+ ++ S+N ++ S ++
Sbjct: 239 EKTSILTH-NADEILGFVTSDSVSKTVSMLDSRNEFQPSKRL 279
>At1g33050.1 68414.m04069 expressed protein
Length = 693
Score = 30.7 bits (66), Expect = 3.9
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 695 EKFEMKTHLNSDEENLCNTSESTSKTLDVMSSKNNYRSSDKV 736
EK + TH N+DE TS+S SKT+ ++ S+N ++ S ++
Sbjct: 239 EKTSILTH-NADEILGFVTSDSVSKTVSMLDSRNEFQPSKRL 279
>At5g16880.3 68418.m01977 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 297
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/78 (20%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 157 GQNISNKINCKHKKILICSPTELTLKLSAG-ENIESNIDEITSSNLNSNKRRAICSSDDL 215
G N+ +K+ +++ I +E++ K+SAG ++ + E+ ++K ++++L
Sbjct: 2 GDNLMDKVTAFGERLKI-GGSEVSNKISAGVSSMSFKVKELFQGPNPTDKIVEDATTENL 60
Query: 216 SDDLTNMNFDVCAIVNED 233
+ +MN ++C ++N++
Sbjct: 61 EEPDWDMNLEICDMINQE 78
>At5g16880.2 68418.m01979 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/78 (20%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 157 GQNISNKINCKHKKILICSPTELTLKLSAG-ENIESNIDEITSSNLNSNKRRAICSSDDL 215
G N+ +K+ +++ I +E++ K+SAG ++ + E+ ++K ++++L
Sbjct: 2 GDNLMDKVTAFGERLKI-GGSEVSNKISAGVSSMSFKVKELFQGPNPTDKIVEDATTENL 60
Query: 216 SDDLTNMNFDVCAIVNED 233
+ +MN ++C ++N++
Sbjct: 61 EEPDWDMNLEICDMINQE 78
>At5g16880.1 68418.m01978 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate [Homo
sapiens] GI:2731383; contains Pfam profiles PF00790: VHS
domain, PF03127: GAT domain
Length = 407
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/78 (20%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 157 GQNISNKINCKHKKILICSPTELTLKLSAG-ENIESNIDEITSSNLNSNKRRAICSSDDL 215
G N+ +K+ +++ I +E++ K+SAG ++ + E+ ++K ++++L
Sbjct: 2 GDNLMDKVTAFGERLKI-GGSEVSNKISAGVSSMSFKVKELFQGPNPTDKIVEDATTENL 60
Query: 216 SDDLTNMNFDVCAIVNED 233
+ +MN ++C ++N++
Sbjct: 61 EEPDWDMNLEICDMINQE 78
>At5g10660.1 68418.m01234 calmodulin-binding protein-related
contains weak similarity to calmodulin-binding proteins
Length = 407
Score = 30.3 bits (65), Expect = 5.2
Identities = 23/123 (18%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 539 KEPSKFHPSNIMES--LAEKENDKNISQNPSYDTN-RKTLNVTDTNNSKHDTLRMKIENN 595
KEP +N E + +K +D+ S+ + T+ + +NV ++ + + +K E
Sbjct: 273 KEPENIEENNSEEEEEVKKKSDDEENSETVATTTDMNEAVNVEESKEEEKEEAEVKEEEG 332
Query: 596 FNNHSTNYTRSKMKNLKTLPDPDVSNKNIDLLWQLVSGNATTANGSNDYVSMNRMSTSLQ 655
++ + T M ++ LP+ N ++V G + ND ++ S +
Sbjct: 333 ESSAAKEETTETMAQVEELPEEGTKN-------EVVQGKKESPTAYNDVIASKMQENSKK 385
Query: 656 SLI 658
+ +
Sbjct: 386 NKV 388
>At1g79450.2 68414.m09260 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein similar to GI:4966357;
GI:4585976; GI:11994416; GI:9757735 from [Arabidopsis
thaliana]
Length = 283
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 548 NIMESLAEKENDKNISQNPSYDTNRKTLNVTDTNNSKHDTLRMKIENNFNNHSTN 602
NI + L+E+E+ + + T RK +T+ DT+ + ++NN+N +S N
Sbjct: 164 NISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTYSFN 218
>At1g79450.1 68414.m09259 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein similar to GI:4966357;
GI:4585976; GI:11994416; GI:9757735 from [Arabidopsis
thaliana]
Length = 350
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 548 NIMESLAEKENDKNISQNPSYDTNRKTLNVTDTNNSKHDTLRMKIENNFNNHSTN 602
NI + L+E+E+ + + T RK +T+ DT+ + ++NN+N +S N
Sbjct: 231 NISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTYSFN 285
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 30.3 bits (65), Expect = 5.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 581 NNSKHDTLRMKIENNFNNHSTNYTR--SKMKNLKTLPDPDVSN 621
N K +TLR+KIE +F H ++ R ++ LK D D S+
Sbjct: 571 NKRKLETLRLKIELDFQRHKDDHQRLEQELGRLKASSDSDSSH 613
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 29.9 bits (64), Expect = 6.8
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Query: 486 LNSESSLVATIDEIRKSTVTNSPRNLYHRGDHLWDSPQPTASNLDPILSEALW--KEPSK 543
L+ ESS + +I +S V N +LY G L + T S L L L+ +E +
Sbjct: 512 LHPESSCRPSTRDILQSEVVNGIPDLYAEGLSLSIEQEDTESEL---LQHFLFLSQEKRQ 568
Query: 544 FHPSNIMESLAEKENDKNISQNPSYDTNRKTLNVTDTNNSKHDTLRMKIENNFNNHSTNY 603
H N+ME +A E D +L +++ M++ N N + Y
Sbjct: 569 KHAGNLMEEIASVEADIEEIVKRRCAIGPPSLEEASSSSPASSVPEMRLIRNINQLESAY 628
Query: 604 TRSKM 608
+++
Sbjct: 629 FAARI 633
>At4g04400.1 68417.m00634 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 735
Score = 29.9 bits (64), Expect = 6.8
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 35 PKGPLLWKRKQSDIELNNKAVIQNPGT-EENKTVVNLNP-----IRSFKHSLHRNQNGAS 88
PKG ++ + + ++A + EE++T L P I+ F+ + ++ NG
Sbjct: 86 PKGTAEIEKAMEEPRVGDEASPKGTAEIEEDQTGTTLKPLIDAVIQQFEEA--KDGNGEE 143
Query: 89 YSIESTLEQHPKKDIENANKNFLLDQWIAKIGVPTLSSGSFGNNGCDASGIEIYSVENTP 148
E + PK+ +EN N+ + ++ V GN+G + ++ S P
Sbjct: 144 LEEEEMVNTIPKEGVENVNRQDTYEAEDDEVSVKETEEDEAGNDGLEDDDLD--SQPLPP 201
Query: 149 QTL 151
QT+
Sbjct: 202 QTM 204
>At1g20640.2 68414.m02584 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 844
Score = 29.9 bits (64), Expect = 6.8
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 443 ANSTICTDDSFSVVDANKDAIHLEPIMEELDDLTDMDITNKKRLNSESSLVATIDEIRKS 502
A STI S+ + E + E +++ I N L+ S A+++EI++S
Sbjct: 437 ALSTIMAHVPRSLRTVTDKELEEESEVIEREEIVTPKIENASELHGNSPWNASLEEIQRS 496
Query: 503 TVTNSPRNL 511
T++P+NL
Sbjct: 497 NNTSNPQNL 505
>At1g20640.1 68414.m02583 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 844
Score = 29.9 bits (64), Expect = 6.8
Identities = 19/69 (27%), Positives = 34/69 (49%)
Query: 443 ANSTICTDDSFSVVDANKDAIHLEPIMEELDDLTDMDITNKKRLNSESSLVATIDEIRKS 502
A STI S+ + E + E +++ I N L+ S A+++EI++S
Sbjct: 437 ALSTIMAHVPRSLRTVTDKELEEESEVIEREEIVTPKIENASELHGNSPWNASLEEIQRS 496
Query: 503 TVTNSPRNL 511
T++P+NL
Sbjct: 497 NNTSNPQNL 505
>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
from (Arabidopsis thaliana)
Length = 1520
Score = 29.9 bits (64), Expect = 6.8
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 439 QDDYANSTICTDDSFSVVDANKDAIHLEPIMEELDDLTDMDITNKKRLNSESSLVATIDE 498
Q Y ST+ DD + + + I + E+ D++ I+N L+ +SS+ ++D+
Sbjct: 1430 QQLYRISTMYWDDKYGTHSVSTEVI--ATMRAEVSDVSKSAISNSFLLDDDSSIPFSLDD 1487
Query: 499 IRKS 502
I KS
Sbjct: 1488 ISKS 1491
>At1g16360.1 68414.m01957 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein Similar to GI:4585976;
GI:11994416; GI:4835763; GI:9757735 from [Arabidopsis
thaliana]
Length = 336
Score = 29.9 bits (64), Expect = 6.8
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 553 LAEKENDKNISQNPSYDTNRKTLNVTDTNNSKHDTLRMKIENNFNNHSTN 602
L+E+E+ + + T RK DT+ DT+++ ++NN+N +S N
Sbjct: 222 LSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFN 271
>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
protein weak similarity to transcription co-repressor
Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 744
Score = 29.5 bits (63), Expect = 9.0
Identities = 17/52 (32%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 450 DDSFSVVDANKDAIHLEPIMEELDDLTDMDITNKKRLNSESSLVATIDEIRK 501
DD+ S +D+ K+A H EP + + L ++ +RL+++ S++A +DE+ K
Sbjct: 175 DDARSYIDSVKEAFHDEP-AKYAEFLKLLNDYKARRLDAD-SVIARVDELTK 224
>At1g07990.1 68414.m00871 SIT4 phosphatase-associated family protein
contains Pfam profile: PF04499 SIT4
phosphatase-associated protein
Length = 802
Score = 29.5 bits (63), Expect = 9.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 479 DITNKKRLNSESSLVATIDEIRKSTVTNSPRNLYHRGDHLWDSPQPTA 526
D +K L S+ ++ + R+S V++S N Y RG H+++SP P +
Sbjct: 248 DSHSKSGLVHSLSVCTSLLDPRRSAVSSSMFNSY-RGQHMFESPVPVS 294
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.127 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,813,010
Number of Sequences: 28952
Number of extensions: 744800
Number of successful extensions: 1880
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1862
Number of HSP's gapped (non-prelim): 33
length of query: 789
length of database: 12,070,560
effective HSP length: 87
effective length of query: 702
effective length of database: 9,551,736
effective search space: 6705318672
effective search space used: 6705318672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 63 (29.5 bits)
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