GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001939-TA|BGIBMGA001939-PA|undefined
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    31   2.7  
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     31   3.6  
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356...    30   6.2  
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    30   8.2  

>01_01_0762 +
           5889925-5890136,5891110-5891273,5891755-5891878,
           5891941-5892073,5892629-5892732,5892867-5895780,
           5895876-5895965,5896251-5896355,5896633-5896740,
           5896826-5896876
          Length = 1334

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 52  NKAVIQNPGTEENKTVVNLNPIRSFKHSLHRNQNGASYSIESTLEQHPKKDIENANKNFL 111
           N++ ++ P T   +T  +     SF+HS H+N  G   SI   LE   +   EN  + F 
Sbjct: 799 NQSTVRTPDTVIGQTEGSTGCSTSFEHSDHKNIIGKQTSISELLES--EDSAENGAEMFS 856

Query: 112 LDQWIAKIGVPTLSSGSFGN 131
                 +  +  +S+ SF +
Sbjct: 857 KTDMTGRNNMNQVSASSFSS 876


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 564 QNPSYDTNRKTLNVTDTNNSKHDTLRMKIENNFNNHSTNYTRSKMKNLKTLPDPDVSNKN 623
           ++PS+  +R +  V D +      ++MK EN+ N H  N T ++  +   +    VS + 
Sbjct: 633 EDPSFTGSRASSPVADKHEQSDRRVKMKTENS-NPHLGNDTNAESWHSNDVKGASVSEEG 691

Query: 624 IDLLWQLVSGNATTANGSNDYVSMNRMSTS 653
                 +++ ++ T  G+   V ++R++ S
Sbjct: 692 DKSPRAMLTDDSKTTEGAGRDVPVSRVACS 721


>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
            3560853-3561491,3562154-3562450,3562553-3563407,
            3564363-3564545,3565041-3565118,3565762-3565974,
            3566075-3566238,3566357-3566445,3566761-3566891,
            3566980-3567148,3567255-3567327,3567525-3567606,
            3567677-3567808,3568743-3568818,3568965-3569065,
            3569446-3569636,3569738-3569912,3570604-3570854,
            3571327-3571603,3572184-3572267,3572496-3573206
          Length = 1867

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 462  AIHLEPIMEELDDLTDMDITNKKRLNSESSLVATIDEIRK 501
            A H+ P++  +DDLTD+    +  +N +S L+  +  + K
Sbjct: 1511 ASHISPLLHFIDDLTDLSRFRRLEINLQSILLQYLSTLMK 1550


>04_04_0961 + 29715938-29716034,29716918-29717133,29717438-29717776,
            29718247-29719274,29719465-29719551,29719636-29720043,
            29720394-29720558,29720742-29721036,29721131-29721345,
            29721838-29722143,29722474-29722537,29722644-29722883,
            29722959-29723062
          Length = 1187

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/57 (28%), Positives = 30/57 (52%)

Query: 444  NSTICTDDSFSVVDANKDAIHLEPIMEELDDLTDMDITNKKRLNSESSLVATIDEIR 500
            ++ +  D++ + VD++ DAI  E I +E  D T + I ++     +S L+    E R
Sbjct: 1099 SNVLILDEATASVDSSTDAIIQETIRDEFRDCTVLTIAHRIHTVIDSDLILVFSEGR 1155


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.127    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,405,917
Number of Sequences: 37544
Number of extensions: 805146
Number of successful extensions: 1625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1621
Number of HSP's gapped (non-prelim): 6
length of query: 789
length of database: 14,793,348
effective HSP length: 88
effective length of query: 701
effective length of database: 11,489,476
effective search space: 8054122676
effective search space used: 8054122676
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 64 (29.9 bits)