Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001938-TA|BGIBMGA001938-PA|undefined
(267 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 101 1e-22
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 94 2e-20
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 29 0.70
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc... 28 1.2
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 27 2.8
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 27 3.7
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 26 4.9
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster... 26 6.5
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 6.5
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 8.6
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 8.6
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 101 bits (242), Expect = 1e-22
Identities = 65/225 (28%), Positives = 116/225 (51%), Gaps = 15/225 (6%)
Query: 17 LEIIHSKVEDVILPNNIKVDVIVSEWMGFYLLHEGMLDSVLIARDKFLKEGGEMFPETAV 76
+ +I K+E++ LP KVD+IVSEWMG++LL+E MLD+VL+ARD++L G +FP+ A
Sbjct: 105 ITLIQGKMEEIQLPVE-KVDIIVSEWMGYFLLYESMLDTVLVARDRYLAPDGLLFPDRAQ 163
Query: 77 IYVAPCSIPSLYNK----WNNVHGVSMSAFAKHLRKNKSTKPEILNIEQKDLLGDEVALC 132
I +A ++ W++V+G S K + K +P + +++ + + +
Sbjct: 164 IQLAAIEDADYKSEKIGFWDDVYGFDFSPIKKDVWK----EPLVDTVDRIAVNTNSCVIL 219
Query: 133 WINLREDSASDLNEFSIQHVVGAKKSGSYEGLCLWFECNFPSMSETKDENRIILDTSPNS 192
++L+ DL FS + A ++ WF+ F + + I T P S
Sbjct: 220 DLDLKTVKKEDL-AFSSPFEITATRNDFVHAFLAWFDIEFSACHKP-----IKFSTGPFS 273
Query: 193 LATHWKQTAIVLPQEVEVEEGEPIAFQLSMKRDTEHNRRYNLQMT 237
THWKQT +++ V+ GE I ++ K ++R ++ ++
Sbjct: 274 RYTHWKQTVFYTHKDLTVKAGEYIRGTITCKPAEGNHRELDIDIS 318
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 93.9 bits (223), Expect = 2e-20
Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 17/241 (7%)
Query: 6 VQNNYFNSYED-LEIIHSKVEDVILPNNIKVDVIVSEWMGFYLLHEGMLDSVLIARDKFL 64
+ N + N D + I K+ED+ LP KVD+I+SEWMG+ L E M+DSVL+ARD+FL
Sbjct: 294 ISNAFENGLADQITFIRGKIEDISLPVG-KVDIIISEWMGYALTFESMIDSVLVARDRFL 352
Query: 65 KEGGEMFP-ETAVIYVAPCSIPSL---YNKWNNVHGVSMSAFAKHLRKNKSTKPEILNIE 120
G M P ET ++ A + L + W++V+G M+ K S + +
Sbjct: 353 APSGIMAPSETRLVLTATTNTELLEEPIDFWSDVYGFKMNGMKDASYKGVSVQV----VP 408
Query: 121 QKDLLGDEVALCWINLREDSASDLNEFSIQHVVGAKKSGSYEGLCLWFECNFPS-----M 175
Q + V N+ D++ F+ + G LWF+ F + +
Sbjct: 409 QTYVNAKPVVFARFNMHTCKVQDVS-FTSPFSLIIDNEGPLCAFTLWFDTYFTTKRTQPI 467
Query: 176 SETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKRDTEHNRRYNLQ 235
E DE T P THWKQ ++L +++G + +S ++ ++NR ++
Sbjct: 468 PEAIDE-ACGFTTGPQGTPTHWKQCVLLLRNRPFLQKGTRVEGTISFSKNKKNNRDLDIS 526
Query: 236 M 236
+
Sbjct: 527 V 527
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 29.1 bits (62), Expect = 0.70
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 34 KVDVIVSEW---MGFYLLHEGMLDSVLIARDKFLKEGGEMFPETAVIYVAPCSIPSLYNK 90
K+D++VSE MG L LD V D+ E G P + + YV P P L+++
Sbjct: 415 KIDILVSELLGSMGDNELSPECLDGVQHVLDE---ETGICIPSSYISYVTPIMSPKLWSE 471
Query: 91 WNNVH 95
N++
Sbjct: 472 ARNMN 476
>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 349
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 17 LEIIHSKVEDVILPNNIKVDV-IVSEWMGFYLLHEGMLDSVLIARDKFLK 65
LE I S ++D +LP +D+ + + W G +LL EG+ I+ D+F++
Sbjct: 211 LESISSPIKDNVLPKKFNIDLELTTFWYGRFLL-EGINS---ISSDEFIQ 256
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 170 CNFPSMSETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKRDTEH 228
C P M + D N I L ++P SL + PQE P +L+M+++ H
Sbjct: 199 CTKPEMMQFNDGNDIPLRSNPVSLWKSLPEGETFTPQEAAKILKWPSIEELNMRQNATH 257
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/63 (25%), Positives = 24/63 (38%)
Query: 191 NSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKRDTEHNRRYNLQMTLLDPEAVDHPQPC 250
NS A K A P + V G PI +Q R+ +R + ++ + P
Sbjct: 339 NSKALANKYGAQSQPSIIAVRNGMPIVYQAITPREFRDYKRITEWINIVSSPFITELTPT 398
Query: 251 SCH 253
CH
Sbjct: 399 KCH 401
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 133 WINLREDSASDLNEFSIQHVVGAKKSGS 160
W+ SDLN ++ HV G K GS
Sbjct: 65 WLRCIGYQPSDLNRLNVIHVAGTKGKGS 92
>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 419
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 164 LCLWFECNFPSMSETKDENRIILDTSPNSLATHWKQTAIVL 204
LCLW C+FP +S + I ++ LA ++ L
Sbjct: 126 LCLWDACHFPPLSPYSSFSSIYWSSTVPELALRNPNISVAL 166
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 96 GVSMSAFAKHLRKNKSTKPEILNIEQKDLLGDEVALCWINL 136
G ++LR S K IL + + DL+ VA W+ +
Sbjct: 231 GTRCGTVERYLRNEASHKHMILVLNKVDLVPTSVAAAWVKI 271
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 177 ETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVEEGEPIAFQLSMKR 224
E KD N I+L S + WK T L ++ + +P++ ++ R
Sbjct: 401 EVKDNNPILLSLSSDGTVRGWKYTGEQL-FKIRCDSKQPLSMSVTDSR 447
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.4 bits (53), Expect = 8.6
Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 141 ASDLNEFSIQHVVGAKKSGSYEGLCLWFECNFPSMSETKD-ENRIILDTSPNSLATHWKQ 199
A+D + S+ H + + + N S+ +D + I DTS NS A H +
Sbjct: 401 AADATKSSVAHNEKVEDISDSDIPIMKTSSNSTSLDADRDSDTSSISDTSSNSSAPHEQL 460
Query: 200 TAIVLPQEVEVEEGEPIAFQLSMKRDTEHNRRYNLQMTLLDPEAVD 245
A L V+ P ++ ++ + R+ L+D + D
Sbjct: 461 NATSLASTVDESSRSPPLPEVESNKENDIKRKQPFH-DLMDSSSPD 505
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,323,545
Number of Sequences: 5004
Number of extensions: 56713
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 11
length of query: 267
length of database: 2,362,478
effective HSP length: 72
effective length of query: 195
effective length of database: 2,002,190
effective search space: 390427050
effective search space used: 390427050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -