GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001938-TA|BGIBMGA001938-PA|undefined
         (267 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.45 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.45 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.45 
DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    23   3.2  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   3.2  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    22   4.2  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    22   4.2  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    22   5.5  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   9.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 73  ETAVIYVAPCSIPSLYNKWNNVHGVSMSAFAKHLRKNKST 112
           + A + ++P S  SL    NN+HG++ S    HL ++  T
Sbjct: 216 DAANVKLSPKSASSL-PPGNNIHGMAPSVMYPHLNRSSPT 254


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 73  ETAVIYVAPCSIPSLYNKWNNVHGVSMSAFAKHLRKNKST 112
           + A + ++P S  SL    NN+HG++ S    HL ++  T
Sbjct: 164 DAANVKLSPKSASSL-PPGNNIHGMAPSVMYPHLNRSSPT 202


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 73  ETAVIYVAPCSIPSLYNKWNNVHGVSMSAFAKHLRKNKST 112
           + A + ++P S  SL    NN+HG++ S    HL ++  T
Sbjct: 347 DAANVKLSPKSASSL-PPGNNIHGMAPSVMYPHLNRSSPT 385


>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
          protein 7 protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 7  QNNYFNSYEDLEIIHSKVEDVILPNNIK 34
          +N Y N Y+++++      D +L N IK
Sbjct: 20 ENKYTNKYDNVDVDKILNNDRVLTNYIK 47


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 169 ECNFPSMSETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVE 211
           + N+P ++ T  E +      PN L+T W+Q+ + L + ++ +
Sbjct: 424 QLNYPGVTVTNIEVQA-KGGKPNVLSTFWQQSDLDLSRGLDFQ 465


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 166 LWFECNFPSMSETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVEEGEPIA 217
           LW   +  S SET  ++R +LD S  SL      T   LP  +   EG  ++
Sbjct: 7   LWKMKDPMSASETVQDHRNLLDWSKTSLD---NATEHKLPISMRFNEGHQLS 55


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 166 LWFECNFPSMSETKDENRIILDTSPNSLATHWKQTAIVLPQEVEVEEGEPIA 217
           LW   +  S SET  ++R +LD S  SL      T   LP  +   EG  ++
Sbjct: 7   LWKMKDPMSASETVQDHRNLLDWSKTSLD---NATEHKLPISMRFNEGHQLS 55


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
          protein 18 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 24 VEDVILPNNIKVDVIVS 40
          +E+ ++P+NI +D I+S
Sbjct: 17 LEEYVIPDNIDIDDILS 33


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory
          receptor candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 76 VIYVAPCSIPSLYNKWNNVHGVS 98
          +I +    I S++NKWN     S
Sbjct: 49 IITIGCLCIWSIFNKWNQFRSYS 71


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,502
Number of Sequences: 317
Number of extensions: 2806
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 267
length of database: 114,650
effective HSP length: 56
effective length of query: 211
effective length of database: 96,898
effective search space: 20445478
effective search space used: 20445478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)