GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001938-TA|BGIBMGA001938-PA|undefined
         (267 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 4   EEVQNNYFNSYEDLEIIH 21
           E +QN  FN   +L+I+H
Sbjct: 831 ESIQNRTFNGLNNLQILH 848


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 6/21 (28%), Positives = 16/21 (76%)

Query: 1   METEEVQNNYFNSYEDLEIIH 21
           ++TE++ ++ +N+  + EI+H
Sbjct: 192 LDTEQILDDMYNNNTEWEIVH 212


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%), Gaps = 1/12 (8%)

Query: 247 PQPCSCHMTKCI 258
           P+PC CH  +CI
Sbjct: 476 PEPCRCH-ARCI 486


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/12 (58%), Positives = 9/12 (75%), Gaps = 1/12 (8%)

Query: 247 PQPCSCHMTKCI 258
           P+PC CH  +CI
Sbjct: 476 PEPCRCH-ARCI 486


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.133    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,361
Number of Sequences: 429
Number of extensions: 3356
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 4
length of query: 267
length of database: 140,377
effective HSP length: 57
effective length of query: 210
effective length of database: 115,924
effective search space: 24344040
effective search space used: 24344040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)