GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001937-TA|BGIBMGA001937-PA|IPR011497|Protease inhibitor,
Kazal-type, IPR003645|Follistatin-like, N-terminal,
IPR002350|Proteinase inhibitor I1, Kazal
         (132 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0333 - 4391571-4392289,4393048-4393159                           31   0.23 
11_04_0438 - 17737040-17737122,17737373-17737496,17737897-177381...    28   2.1  
05_04_0286 + 19833114-19834053,19834149-19834165                       27   3.7  
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662...    26   8.6  
10_08_0640 + 19512591-19512856,19513428-19513550,19513660-195137...    26   8.6  
02_05_1000 + 33417357-33417600,33417692-33417744,33418376-334184...    26   8.6  

>04_01_0333 - 4391571-4392289,4393048-4393159
          Length = 276

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 8   SSVSALRMTRAECCTGASRSPAAWSPKDY 36
           S+  A R  R  CCTGA  SPAA  P DY
Sbjct: 210 SACDAYRSARY-CCTGAYGSPAACGPTDY 237


>11_04_0438 -
          17737040-17737122,17737373-17737496,17737897-17738182,
          17738265-17738397,17738742-17738953,17739455-17739816,
          17739907-17739937,17744738-17745111
          Length = 534

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 3  RAGRCSSVSALRMTRAECCTGASRSPAAWSPKDYDSGEIFFYKVLSGGVPCNACAESC 60
          R     S +A  +TR+   TG++  P A +P  +    I    V  GG  C   A  C
Sbjct: 28 RGAAARSAAASVVTRSRPVTGSAVEPPASTPDTHHRSRIRVRGVRIGGRMCRPLASPC 85


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 85  SCRRVSAVCGSDGQTYRSLC 104
           +CR    VCG DG ++  LC
Sbjct: 254 ACRATGGVCGHDGDSHGDLC 273


>12_02_0035 - 12563503-12564405,12564494-12565611,12565709-12566239,
            12566337-12567153
          Length = 1122

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 13   LRMTRAECCTGASRSPAAWSPKDYDS 38
            LR  RA   + +   PA+WS +D DS
Sbjct: 1088 LRSLRASLASRSKSQPASWSQQDKDS 1113


>10_08_0640 +
           19512591-19512856,19513428-19513550,19513660-19513729,
           19513846-19513956,19514224-19514307,19515205-19515255,
           19515844-19515873,19516002-19516064,19516164-19516229,
           19516369-19516485,19516579-19516614,19516938-19517057,
           19517188-19517358,19517578-19517688
          Length = 472

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 24  ASRSPAAWSPKDYDSGEIFFYKVLSGGVPCNACAE 58
           AS  P + SP   DSG   F  V++  V  +ACA+
Sbjct: 382 ASDQPPSQSPGHVDSGRKLFRIVVADIVSVSACAD 416


>02_05_1000 +
           33417357-33417600,33417692-33417744,33418376-33418413,
           33418720-33419114,33420092-33420221,33420512-33421343
          Length = 563

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 13  LRMTRAECCTGASRSPAAWSPKD 35
           L M RA CC  AS     WSP++
Sbjct: 197 LVMGRAPCCDKASVKKGPWSPEE 219


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.131    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,833,910
Number of Sequences: 37544
Number of extensions: 125136
Number of successful extensions: 260
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 6
length of query: 132
length of database: 14,793,348
effective HSP length: 75
effective length of query: 57
effective length of database: 11,977,548
effective search space: 682720236
effective search space used: 682720236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)