GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001937-TA|BGIBMGA001937-PA|IPR011497|Protease inhibitor,
Kazal-type, IPR003645|Follistatin-like, N-terminal,
IPR002350|Proteinase inhibitor I1, Kazal
         (132 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    40   6e-04
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    33   0.051
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    29   0.82 
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    29   0.82 
L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    28   1.9  
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    28   1.9  
U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 92  VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGPCQGKK 130
           VCGSDG+TY + C+L+  AC    K++ V Y+  C+  K
Sbjct: 475 VCGSDGKTYSNECRLQNAAC-MAQKNIFVKYNSACEACK 512



 Score = 36.7 bits (81), Expect = 0.005
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 92  VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGPC 126
           VCG+DG TY S C +++ AC + +K ++  + G C
Sbjct: 551 VCGTDGVTYSSECHMKKSACHQ-SKFVMTAFEGKC 584



 Score = 34.3 bits (75), Expect = 0.029
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 90  SAVCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHG---PCQGKK 130
           S VC S G  Y+S C LR  AC     ++ V + G   PC G K
Sbjct: 258 SPVCSSHGVDYQSSCHLRHHACESKT-NITVKFFGRCDPCHGHK 300



 Score = 34.3 bits (75), Expect = 0.029
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query: 92  VCGSDGQTYRSLCKLRRQAC 111
           VCGSDG TY +LC+L+  AC
Sbjct: 880 VCGSDGTTYSNLCELKMFAC 899



 Score = 33.9 bits (74), Expect = 0.038
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 86  CRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGPC 126
           C   SA VCG+DG+TY + C L+  AC K  K ++V   G C
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAAC-KEQKDILVWKRGNC 363



 Score = 33.5 bits (73), Expect = 0.051
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 84  ASCRRVS-AVCGSDGQTYRSLCKLRRQAC--RKPAKHLVVDYHGPCQ 127
           A CR V+  VCGSD  +Y S C L  ++C   K    L V   GPC+
Sbjct: 167 ARCRVVTDVVCGSDHVSYSSFCHLSVRSCVLAKNGVRLRVATKGPCK 213



 Score = 29.5 bits (63), Expect = 0.82
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 92  VCGSDGQTYRSLCKLRRQACRKPA 115
           +CG +G  Y SLC L+  +C+K A
Sbjct: 619 ICGENGVLYPSLCHLQLASCQKGA 642



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 9/35 (25%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 92  VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGPC 126
           VC ++G+T+ + C++++++C   +  + V + G C
Sbjct: 404 VCATNGETFDNECEMKKKSCETKSM-IKVKHQGTC 437



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 92  VCGSDGQTYRSLCKLRRQACR 112
           +CGSDG  Y + C L   +CR
Sbjct: 694 ICGSDGIVYNNQCHLNTISCR 714


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 33.5 bits (73), Expect = 0.051
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 89  VSAVCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGPCQGKKK 131
           +  VCG+D  TY +LC LR    ++  + L+  Y+G C  KK+
Sbjct: 25  IRPVCGTDNVTYNNLCFLR--CVQRTNEDLLFFYNGTCCDKKE 65



 Score = 32.3 bits (70), Expect = 0.12
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 92  VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGPC 126
           +CG++G T+ + C L+++ C      + V Y G C
Sbjct: 779 LCGTNGVTFTNACSLQKEICESANSTIEVAYTGMC 813



 Score = 31.9 bits (69), Expect = 0.15
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 90  SAVCGSDGQTYRSLCKLRRQAC---RKPAKHLVVDYHGPC 126
           S VC ++G T+ ++C + + AC   +K  K + V Y G C
Sbjct: 930 SPVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQC 969



 Score = 31.5 bits (68), Expect = 0.20
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 92  VCGSDGQTYRSLCKLRRQACRKPAKHLVVDYHGPC 126
           +C SD  TY +LC+ R+Q C      L V + G C
Sbjct: 597 ICASDFSTYENLCQFRKQKCLD--SELEVLFKGKC 629



 Score = 30.3 bits (65), Expect = 0.47
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 84   ASCRRVSA-VCGSDGQTYRSLCKLRRQACRKPAKH-----LVVDYHGPC 126
            ASC +    VC S G+T+ SLC      C     H     L +DY G C
Sbjct: 1071 ASCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKC 1119



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 86   CRRVSAVCGSDGQTYRSLCKLRRQAC 111
            C    AVC S+GQT+ + C  +++ C
Sbjct: 1024 CESSGAVCDSEGQTHMNHCVYQQRRC 1049


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 92  VCGSDGQTYRSLCKLRRQACRK 113
           VCG+DGQ +R  C    Q C+K
Sbjct: 527 VCGTDGQCWRGNCSDSHQQCQK 548


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 92  VCGSDGQTYRSLCKLRRQACRK 113
           VCG+DGQ +R  C    Q C+K
Sbjct: 527 VCGTDGQCWRGNCSDSHQQCQK 548


>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 92  VCGSDGQTYRSLCKLRRQAC 111
           VC ++ QT+ SLC L R+ C
Sbjct: 91  VCANNNQTFTSLCDLYRERC 110


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 92  VCGSDGQTYRSLCKLRRQAC 111
           VC ++ QT+ SLC L R+ C
Sbjct: 91  VCANNNQTFTSLCDLYRERC 110


>U40954-1|ABA00179.1|  251|Caenorhabditis elegans Hypothetical
           protein ZK813.6 protein.
          Length = 251

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 92  VCGSDGQTYRSLCKLRRQAC---RKPAKHLVVDYHGPC 126
           VC   GQT+ + C      C    +  + L VDY G C
Sbjct: 132 VCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVC 169



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 92  VCGSDGQTYRSLCKLRRQACRK-----PAKHLVVDYHGPCQGK 129
           VC S+G T+  +C      CR+       K L +   GPC+ K
Sbjct: 183 VCDSEGNTHTDICSFYIAKCRQMRRGIGKKRLQIAGVGPCKPK 225


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.131    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,503
Number of Sequences: 27539
Number of extensions: 92053
Number of successful extensions: 196
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 29
length of query: 132
length of database: 12,573,161
effective HSP length: 74
effective length of query: 58
effective length of database: 10,535,275
effective search space: 611045950
effective search space used: 611045950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)