GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001936-TA|BGIBMGA001936-PA|IPR000253|Forkhead-
associated, IPR000467|D111/G-patch, IPR008984|SMAD/FHA
         (556 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          31   0.021
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   1.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    25   1.8  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    24   2.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   4.2  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   4.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   5.6  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   5.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   5.6  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   5.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   7.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   7.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   7.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   9.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   9.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 31.1 bits (67), Expect = 0.021
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 528 GFRLLEKMGWSKGEGLGKDSQGEIEP 553
           G +LL +MG+  G+GLGKD QG   P
Sbjct: 163 GAKLLLQMGFQPGKGLGKDLQGISAP 188


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 266 VMELEDKEQNSEDTQDTSK-----KDNKASRDLEDGECSDSADED 305
           V + +D+E++ ED +D +      K  +  +DL+D + +D   +D
Sbjct: 164 VSDSDDREKDEEDKRDDTDMHGRIKSERNGKDLDDDDMNDDDRKD 208


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 328 AKHHPPCMRVIVRETSLPKLKIGN---LFLITKDGGTIGREGEQHAIVLKDHNVSRNHLD 384
           AK  PP   + +R  + P     +   LF  T DG    R G +   +      SR H  
Sbjct: 206 AKKSPPEKHLRLRRDTAPPQWYQHQPLLFTYTDDGKNQQRTGTELTKMRPKRQSSRRHRK 265

Query: 385 IQYDLARQTYTAVDLGS 401
              D  R+    VD GS
Sbjct: 266 NLKDPCRRRQMYVDFGS 282


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 266 VMELEDKEQNSEDTQDTSKKDNKAS 290
           V E +  E NSED++D    D +AS
Sbjct: 12  VSERDPDEDNSEDSKDPHLTDQQAS 36


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 30  NVRTTSINASSQNNVFELNIPHSSENETPTSDNDNQSLKNTKST 73
           N R  + N ++ NN +  N P+ + N T +S    ++ +N+K++
Sbjct: 373 NNRWHNNNGNNSNNHWRKNNPNDNRNNT-SSRAQGETSRNSKNS 415


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
          protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/24 (29%), Positives = 19/24 (79%)

Query: 57 TPTSDNDNQSLKNTKSTQTPKVKT 80
          +P S++D+++ + + ++ TPK+K+
Sbjct: 44 SPVSNSDSENSEVSSNSYTPKIKS 67


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 297 ECSDSADEDSGSDNECSSNASTSTLTDDENVAKHHPPCMRVI 338
           E ++S ++D G D + SS  +     D+E   +   P MR +
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRKV 217


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 297 ECSDSADEDSGSDNECSSNASTSTLTDDENVAKHHPPCMRVI 338
           E ++S ++D G D + SS  +     D+E   +   P MR +
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRKV 217


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/65 (18%), Positives = 28/65 (43%)

Query: 273 EQNSEDTQDTSKKDNKASRDLEDGECSDSADEDSGSDNECSSNASTSTLTDDENVAKHHP 332
           ++  +D ++ ++K   +S      + SDS      S+ +C S      ++D ++      
Sbjct: 374 KKRRKDKREITRKSTSSSTHTSSQQTSDSFLSKRNSEKKCGSLREIKEVSDCDSSESRKE 433

Query: 333 PCMRV 337
             +RV
Sbjct: 434 VYVRV 438


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 297 ECSDSADEDSGSDNECSSNASTSTLTDDENVAKHHPPCMRVI 338
           E ++S ++D G D + SS  +     D+E   +   P MR +
Sbjct: 176 EDANSDEQDDGDDGQGSSTNNDEDDDDEETGDRQIYPWMRKV 217


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 40  SQNNVFELNIPHSSENETPTSDNDNQSLKNTKS 72
           S + + +++    + N TP++ N+N +  N  +
Sbjct: 114 SHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 146


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
          ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 40 SQNNVFELNIPHSSENETPTSDNDNQSLKNTKS 72
          S + + +++    + N TP++ N+N +  N  +
Sbjct: 62 SHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 94


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 40  SQNNVFELNIPHSSENETPTSDNDNQSLKNTKS 72
           S + + +++    + N TP++ N+N +  N  +
Sbjct: 245 SHDEIPDISSTRGNNNNTPSATNNNTNFNNNSN 277


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 273 EQNSEDTQDTSKKDNKASRDLEDGECSDSADEDSGSDNE 311
           E  SE  +  SKKD K S+        DS +   G++ E
Sbjct: 437 EMRSEKPE--SKKDKKGSQVDHKNNLGDSKNNQDGNNGE 473


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 273 EQNSEDTQDTSKKDNKASRDLEDGECSDSADEDSGSDNE 311
           E  SE  +  SKKD K S+        DS +   G++ E
Sbjct: 329 EMRSEKPE--SKKDKKGSQVDHKNNLGDSKNNQDGNNGE 365


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.125    0.344 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,143
Number of Sequences: 317
Number of extensions: 4304
Number of successful extensions: 16
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 15
length of query: 556
length of database: 114,650
effective HSP length: 60
effective length of query: 496
effective length of database: 95,630
effective search space: 47432480
effective search space used: 47432480
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 45 (22.2 bits)