Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001935-TA|BGIBMGA001935-PA|IPR006644|Dystroglycan-type
cadherin-like, IPR008465|Dystroglycan
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    30   1.4  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    29   3.3  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    28   5.8  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    27   7.6  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    27   7.6  

>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/70 (24%), Positives = 30/70 (42%)

Query: 518 FQMTLEYPFLKLAFNAKNKRKVVEKLANLFGQKETDNIRIQSITNNPTSIIWYNTSLPMD 577
           +   L Y  L+  F +    K+     N    +   N R+Q I N   S+I    ++P+ 
Sbjct: 150 YDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEALINSRVQDIVNGLFSVIVTLGTIPII 209

Query: 578 RCPKAEIEQL 587
           RCP+    ++
Sbjct: 210 RCPQGSAAEM 219


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 532 NAKNKRKVVEKLANLF-GQKETDNIRIQSITNNPTSI 567
           N + +R+VV +L  L  G K   N+ + + TN P SI
Sbjct: 337 NGEVERRVVSQLLTLMDGMKARSNVVVMAATNRPNSI 373


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 690 RRRTGKMSVGDEEERQAFRSKGIPVIFQDELEERTDTEPIHKSPVIMREEKPPLLPPAPD 749
           R +    +VG E++++  +SKG+  +  +   E +  EP  K  V   EE P L     +
Sbjct: 7   RSKRANSNVGVEKDKEKEKSKGVSNVPNEVETESSSHEPSFKKDV--DEEIPSLTAELSE 64

Query: 750 YRSGE 754
              GE
Sbjct: 65  EEEGE 69


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/38 (39%), Positives = 23/38 (60%)

Query: 642 LYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILL 679
           L P + +S + KT S + +S+L+TF I  + I C  LL
Sbjct: 313 LAPMSESSDSDKTVSTSPESHLLTFEINDLSIFCAGLL 350


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 285 FIMQFTLLKQYNNAIDWQIRALEGIVNLFRDTD 317
           FI  F  LK  + ++DW  R L+ +V    D+D
Sbjct: 230 FIFIFETLKPGSCSVDWIARILKAVVYFLEDSD 262


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,579,232
Number of Sequences: 5004
Number of extensions: 154598
Number of successful extensions: 380
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 5
length of query: 788
length of database: 2,362,478
effective HSP length: 78
effective length of query: 710
effective length of database: 1,972,166
effective search space: 1400237860
effective search space used: 1400237860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)