Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001935-TA|BGIBMGA001935-PA|IPR006644|Dystroglycan-type
cadherin-like, IPR008465|Dystroglycan
(788 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20940.1 68417.m03034 leucine-rich repeat family protein cont... 40 0.006
At4g23220.1 68417.m03349 protein kinase family protein contains ... 33 0.55
At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger) fa... 33 0.55
At4g23300.1 68417.m03358 protein kinase family protein contains ... 33 0.97
At1g50610.1 68414.m05685 leucine-rich repeat transmembrane prote... 33 0.97
At3g13440.1 68416.m01690 expressed protein 32 1.7
At3g20190.1 68416.m02559 leucine-rich repeat transmembrane prote... 31 3.9
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 31 3.9
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 30 5.2
At5g10200.1 68418.m01181 expressed protein ; expression supporte... 30 5.2
At4g23150.1 68417.m03341 protein kinase family protein contains ... 30 5.2
At1g04150.1 68414.m00405 C2 domain-containing protein contains I... 30 5.2
At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin ... 30 6.8
At3g52480.1 68416.m05771 expressed protein 29 9.0
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 29 9.0
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 29 9.0
>At4g20940.1 68417.m03034 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat receptor-like protein kinase INRPK1 [Ipomoea nil]
gi|14495542|gb|AAB36558
Length = 977
Score = 39.9 bits (89), Expect = 0.006
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 638 VPPALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMS 697
V PA PG+ S+ SK S + +V + AV ++ +IL+A ++ C+ RRR +
Sbjct: 589 VLPAGSPGSSASEASKNKSTNKLVKVVIIVSCAVALIILILVAILLFCICKSRRREERSI 648
Query: 698 VGDEEERQA 706
G E R+A
Sbjct: 649 TGKETNRRA 657
>At4g23220.1 68417.m03349 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 542
Score = 33.5 bits (73), Expect = 0.55
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)
Query: 629 AEQNTKVSKVPPALYPGAPN-----SQNSKTGSAAEQSYLV-TFIIPAVVIVCMILLAGV 682
+E +++S PP P P + +K GS +V IIP V++V ++LLA
Sbjct: 125 SEAFSRISLAPPPQSPAFPTLPAVTNTATKKGSITISIGIVWAIIIPTVIVVFLVLLA-- 182
Query: 683 IACVLYRRRRTGKMSVGD 700
+ V+YRRR++ + S D
Sbjct: 183 LGFVVYRRRKSYQGSSTD 200
>At2g46160.1 68415.m05740 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 214
Score = 33.5 bits (73), Expect = 0.55
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 632 NTKVSKVPPALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRR 691
+ V V P L P P + N + Y + + +V++ +LL+ I C RRR
Sbjct: 7 SASVFLVHPPLPPSPPQAGNHSYLTTLGFGYSIAIALGFLVLLSTVLLSSYICCRDSRRR 66
Query: 692 RTGKMSVGD 700
T S GD
Sbjct: 67 TTAVESTGD 75
>At4g23300.1 68417.m03358 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 660
Score = 32.7 bits (71), Expect = 0.97
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 639 PPALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRR 691
PP++ GA + N G +A +V +PAVVIV ++++ G C +RR+
Sbjct: 272 PPSVGHGANTTDNDSRGVSA--GIVVVITVPAVVIVLILVVLGFFIC--WRRK 320
>At1g50610.1 68414.m05685 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor-like protein kinase
GB:AAC12254 GI:3015488 from [Lycopersicon esculentum]
Length = 686
Score = 32.7 bits (71), Expect = 0.97
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 624 PLGLCAEQNTKVSKVPPALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVI 683
PL C+ + V VP + P P S + TG A Y + I+ +VI ++++ ++
Sbjct: 245 PLSPCSSSSPGVPVVPVS--PVDPKSTSPPTGKKAGSFYTLAIIL--IVIGIILVIIALV 300
Query: 684 ACVLYRRRR 692
C + RRR
Sbjct: 301 FCFVQSRRR 309
>At3g13440.1 68416.m01690 expressed protein
Length = 278
Score = 31.9 bits (69), Expect = 1.7
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 441 GTRNLILSLRYSDRTEIPAGHWLQFDANNQEFYGLPTTTDEGSVSYQLIAEDSS---KKT 497
G+ +I SL + E+P H+L D N T + V+ +I D + +K
Sbjct: 84 GSGYVITSLILLLQNEVPGVHYLAIDTNPIATRVTKETLEAHGVNADVICADLATGLEKR 143
Query: 498 AYDSLIVEVVKAPPIRPTVEFQMTLEYPFLKLAFNAKNKRKVVEKL 543
S+ V VV PP PT E+++ +E +N R V++K+
Sbjct: 144 LAGSVDVIVVN-PPYVPTPEYEVGME-GIASAWAGGENGRTVIDKI 187
>At3g20190.1 68416.m02559 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
[Petunia integrifolia]
Length = 679
Score = 30.7 bits (66), Expect = 3.9
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 646 APNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRR 692
+P+ +S T QS+ + I+ +VI ++++ ++ C+L+ RRR
Sbjct: 262 SPDLPSSPTEKNKNQSFFIIAIV-LIVIGIILMIISLVVCILHTRRR 307
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 30.7 bits (66), Expect = 3.9
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 361 ESESEPGRGSRLLSRAMSPELGVRGVRWEGAGVCAAPPATRAPDTYPPVTRN 412
ES P +L A SP+ G + + G +PPA AP T PP N
Sbjct: 135 ESPPAPPPPEQLPPPASSPQGGPKKPKKHHPGPATSPPAPSAPATSPPAPPN 186
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 30.3 bits (65), Expect = 5.2
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 464 QFDANNQEFYGLPTTTDEGSVSYQLIAEDSSKKTAYDSLIVEVVKAPPI-RPTVEF 518
Q +E G+PTTT ++S+ AED + + + V++ PP+ P V F
Sbjct: 306 QIKKQRRERLGIPTTTQASNISFGGSAEDPKARYGLNKPV--VIQPPPVSAPPVSF 359
>At5g10200.1 68418.m01181 expressed protein ; expression supported
by MPSS
Length = 621
Score = 30.3 bits (65), Expect = 5.2
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 250 WNFIVEAQNSAGLKARGPLDITVQQHKSGR-TINHRFIMQFTLLKQYNNAIDWQIRALEG 308
W +V + AG+ G L T+ QHK GR ++ M L ++ DWQ A+E
Sbjct: 256 WGGLVNENSPAGI---GLLR-TICQHKLGRGPVSACAGMIEALCNIARSSDDWQYMAIEC 311
Query: 309 IVNLFRDTDMDHLTVLNATQT-GDLCEFVWTND 340
++ L +D + H + A T DL E D
Sbjct: 312 LLWLLQDPNTSHKVIDKAVPTLVDLAEITNLGD 344
>At4g23150.1 68417.m03341 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 659
Score = 30.3 bits (65), Expect = 5.2
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 633 TKVSKVPPALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRR 692
T + PP L P A S + K+G++ + +V ++ +++ +I +AG ++
Sbjct: 248 TAIGTPPPPLPPLASPSLSDKSGNS---NVVVVAVVVPIIVAVLIFIAGYCFFAKRAKKT 304
Query: 693 TGKMSVGDEEERQAFRS 709
G DE+++ S
Sbjct: 305 YGTTPALDEDDKTTIES 321
>At1g04150.1 68414.m00405 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1012
Score = 30.3 bits (65), Expect = 5.2
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 8/135 (5%)
Query: 604 RENVDQVFDKDFKVMSITLNPLGLCAEQNTKVSKVPPALYPGAPNSQNSKTGSAA-EQSY 662
RE V+ + D DF V S+ + N V A S + S ++
Sbjct: 787 REVVEYMLDHDFHVWSMRRSKANFFRLVNVISGLVAVAKLVEVMRSWSKPVYSTVFVLAF 846
Query: 663 LVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMSVGDEEERQAFRSKGIPVIFQDELEE 722
L + P +++ C++L + +RRR R +F DEL+E
Sbjct: 847 LFMVLFPELLLPCLLLYTAAVGVWRFRRR-------SRYPPHMDARISHAETVFPDELDE 899
Query: 723 RTDTEPIHKSPVIMR 737
DT P + ++R
Sbjct: 900 EFDTFPTSRGFDVVR 914
>At2g41890.1 68415.m05181 curculin-like (mannose-binding) lectin
family protein / PAN domain-containing protein contains
Pfam profiles: PF01453 lectin (probable mannose
binding), PF00024 PAN domain
Length = 764
Score = 29.9 bits (64), Expect = 6.8
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 5/129 (3%)
Query: 618 MSITLNPLGLCAEQNTKVSKVPPALYPGA--PN--SQNSKTGSAAEQSYLVTFIIPAVVI 673
M +T G + +S V L P A PN S+ S S + ++ A
Sbjct: 390 MKLTRYISGYSDPSLSSISYVKTCLDPIAVDPNNVSKESPVTVTKSHSICIPCLVGATST 449
Query: 674 VCMILLAGVIACVLYRRRRTGKMSVGDEEE-RQAFRSKGIPVIFQDELEERTDTEPIHKS 732
++ L + V+Y RR K++ E +A KG+ + DE++ TD +
Sbjct: 450 TLVLFLGFQLGIVVYIYRRKKKLAKKKAERFSKATNPKGVMIFSVDEIKAMTDNFDNNIG 509
Query: 733 PVIMREEKP 741
P I + P
Sbjct: 510 PQIFKGVMP 518
>At3g52480.1 68416.m05771 expressed protein
Length = 209
Score = 29.5 bits (63), Expect = 9.0
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 667 IIPAVVIVCMILLAGVIACVLYRRRRTGKMSVGDEEERQAFRSKG 711
++ AV C++ + A VL+ +RR + S+ ER AF S+G
Sbjct: 9 LLVAVFAFCLVAVTAQFAYVLWWKRRFRRRSIAG-SERDAFSSRG 52
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 29.5 bits (63), Expect = 9.0
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 633 TKVSKVPPALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVI-----ACVL 687
+ +S VPP L P + N S++ +T + + +L+AGV C++
Sbjct: 44 SSLSPVPPPLLPPSSNPSPPSNNSSSSDKKTITKAV-LITAASTLLVAGVFFFCLQRCII 102
Query: 688 YRRRR 692
RRRR
Sbjct: 103 ARRRR 107
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 29.5 bits (63), Expect = 9.0
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 487 QLIAEDSSKKTAYDSLIVEVVKAPPIRPTV-EFQMTLEYPFLKLAFNAKNKRKVVEKLAN 545
++IA S + +LI + + +PP++P V E F+KL N K +K K
Sbjct: 133 EVIAPPKSVRRKPPNLITDTITSPPVKPMVFRSNGNGEGNFVKLNLNGKRGKKFPSKYKG 192
Query: 546 LFGQKETDNIR 556
+ + + + R
Sbjct: 193 VSKSRSSYSFR 203
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,022
Number of Sequences: 28952
Number of extensions: 808450
Number of successful extensions: 1842
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1836
Number of HSP's gapped (non-prelim): 19
length of query: 788
length of database: 12,070,560
effective HSP length: 87
effective length of query: 701
effective length of database: 9,551,736
effective search space: 6695766936
effective search space used: 6695766936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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