GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001935-TA|BGIBMGA001935-PA|IPR006644|Dystroglycan-type
cadherin-like, IPR008465|Dystroglycan
         (788 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.66 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   3.5  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   3.5  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 0.66
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 480 DEGSVSYQLIAEDSSKKTAYDSLIVEVVK 508
           +EGSV+Y  +A  SS +  +   +VE VK
Sbjct: 102 NEGSVNYSKMAASSSLRAVFIKSVVEFVK 130


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 664  VTFIIPAVVIVCMILLAGVIACVL 687
            +  ++P V  V +I++A ++ CVL
Sbjct: 1608 LNLVVPVVAAVLVIIVAIIVICVL 1631


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 730 HKSPVIMREEKPPLLPPAPDYRSGEDAP 757
           H+ P +  EE+P  + P     + E+AP
Sbjct: 28  HEEPPLFYEERPDFVAPYIKVEADEEAP 55


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,979
Number of Sequences: 317
Number of extensions: 8015
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 788
length of database: 114,650
effective HSP length: 62
effective length of query: 726
effective length of database: 94,996
effective search space: 68967096
effective search space used: 68967096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)