Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001935-TA|BGIBMGA001935-PA|IPR006644|Dystroglycan-type
cadherin-like, IPR008465|Dystroglycan
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 36 0.12
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 36 0.17
02_05_0866 - 32331629-32334328 34 0.50
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 33 1.2
01_05_0655 - 23972488-23973152,23973193-23973241,23973883-239739... 32 1.5
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 32 2.0
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 31 2.7
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 31 2.7
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290... 31 3.6
09_04_0334 + 16779883-16780150,16780618-16781828 31 4.7
06_03_1051 + 27215113-27215658 31 4.7
04_04_1156 - 31319747-31320085,31320556-31320706,31320795-313210... 30 6.2
07_01_0860 - 7142913-7144895 30 8.2
01_07_0171 + 41683670-41683872,41684386-41684483,41684614-416846... 30 8.2
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 35.9 bits (79), Expect = 0.12
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 93 NGTDYNRSTRNHYTGGHQTGILERTDSIVVRVSDWLTAIAYLSWLGPPPWLFRQPESTVT 152
NG N S T ILE+ S+VV +S +T + Y + L PP ++++
Sbjct: 362 NGVKKNASNGGVQTNTSNADILEKAQSLVVLLSTLVTTVTYQAGLIPPGGVWQENWKEHE 421
Query: 153 EGKSTIIGQTTE---------TVTFAMP------VNQPPVLKHHMKKLAI 187
G ++ E ++ FA+ V P+LKHH+ +LA+
Sbjct: 422 AGNPILLSIQPERYKVFFYCNSIAFAVSLVIIILVQYKPILKHHILELAM 471
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 35.5 bits (78), Expect = 0.17
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 20/156 (12%)
Query: 497 TAYDSLIVEVVKA---PPIRPTVEFQMTLEY--PFLKLAFNAKNKRKVVEKLANLFGQKE 551
T S++V KA P + P V+ +T PFL+L + K +VVE ++G K+
Sbjct: 620 TMATSMLVFFSKAFGIPSLIPLVKDLLTTSIVDPFLRLVEDCK--LQVVESCLTVYGSKD 677
Query: 552 TDNIRIQSITN---NPTSIIWYNTSLPMDR---CPKAEIEQLRKMII----VDDRGSRGG 601
D++ ++S++N N S + SL +D +AE+ +RK ++ DD G
Sbjct: 678 DDDLALKSLSNININDQS-KQASVSLILDSLKDLSEAELSTIRKQLLEEFSADDACPLGS 736
Query: 602 ALRENVDQ--VFDKDFKVMSITLNPLGLCAEQNTKV 635
E+ Q ++ S+ + P+G E +T V
Sbjct: 737 HSNESTSQSPAYNAKLHQKSLEVIPVGFIFEDDTLV 772
>02_05_0866 - 32331629-32334328
Length = 899
Score = 33.9 bits (74), Expect = 0.50
Identities = 17/87 (19%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 611 FDKDFKVMSITLNPLGLCAEQNTKVSKVPPALYPGAPNSQNSKTGSAAEQSYLVTFIIPA 670
+D+ + + +G N++ + + + S S +GS++ S L+ ++P
Sbjct: 390 YDESSLSCFLVQHQIGSLVNANSRRGDMVGFIKVQSSQSPGSPSGSSSNNSTLIAILLPT 449
Query: 671 VVIVCMILLAGVIACVLYRR--RRTGK 695
+V ++++ G + V +R+ RR G+
Sbjct: 450 IVAFVLVVVVGAVIVVSWRKQERRAGR 476
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 32.7 bits (71), Expect = 1.2
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 91 TDNGTDYNRSTRNHYTGGH-QTGILERTDSIVVRVSDWLTAIAYLSW-LGPPPWLFRQPE 148
+D+ + R + +Y+ GH T I + + +V LTA+A L W + PPP F++P+
Sbjct: 153 SDDVEECLRQLQEYYSKGHVHTSIEDAWNEVVAYEHVALTALA-LEWGMEPPPDPFQKPK 211
Query: 149 STVTEGKSTIIGQTTET 165
S++ + ++ + +T
Sbjct: 212 SSLVDQEAQTLRAPQQT 228
>01_05_0655 -
23972488-23973152,23973193-23973241,23973883-23973940,
23974184-23974215,23975961-23976040,23976509-23977898
Length = 757
Score = 32.3 bits (70), Expect = 1.5
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 638 VPPALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRR 691
V PA PGA +S + S A + ++ AVV+ ++L+A V+ V RRR
Sbjct: 246 VSPADVPGAASSSKKRRLSGAA---IAGIVVGAVVLALLLLVAAVLCAVSKRRR 296
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 31.9 bits (69), Expect = 2.0
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 644 PGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMSVGDEEE 703
PG ++ + + S+ S L I A +IV ++++ V+A L +R+R G E+
Sbjct: 249 PGRHSNGSGSSSSSGGNSGLRAGAI-AGIIVALLVIGAVVAFFLIKRKRKGTRQ-EHVEQ 306
Query: 704 RQAFRS-KGIPVIFQDELEERT--DTEPIHKSPVIMREEKPPLLPPAPDYRSGED 755
RQ F S V + E T + EP+ SPV + + PP + + +D
Sbjct: 307 RQPFNSYPSNEVKDVKPIPESTKIEVEPL-PSPVAVSLKPPPKIERNQSFDDDDD 360
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 31.5 bits (68), Expect = 2.7
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 656 SAAEQSYLVTFIIPAVVIVCMILLAGVIACVLY--RRRRTGKMSVGDEEERQA 706
S+ + S +V + A V+ +L AGV CVL RR+R + V +EEE+++
Sbjct: 398 SSGKTSKVVVVAVTAAVLGAAVL-AGVALCVLLVRRRQRRATLPVPEEEEKES 449
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 31.5 bits (68), Expect = 2.7
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 641 ALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMSVGD 700
A+ GA N + + + IIPA +++ +++A ++ R G G
Sbjct: 284 AMQSGAANQSTDEVSGSKHSKWAYFMIIPAAILLISLIVAPILVWRKRGRAAIGPWKTGL 343
Query: 701 EEERQAFRSKGIPVIFQDELE 721
Q G+P + + ELE
Sbjct: 344 SGPLQKAFVTGVPKLNRPELE 364
>05_06_0136 +
25928152-25928659,25928767-25928899,25928987-25929058,
25929150-25929221,25929507-25929670,25929760-25930025,
25930115-25930241,25930599-25930667,25930765-25930957,
25931053-25931299,25931342-25931470,25932367-25932654
Length = 755
Score = 31.1 bits (67), Expect = 3.6
Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 642 LYPGAPN--SQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIA-CVLYRRRRTGKMSV 698
LY PN + ++ +A +S L +I+ VV+V +I+ ++ C+L ++++ G M+
Sbjct: 262 LYGNNPNLCTNDNSCQAAKHKSKLAIYIVAPVVLVLVIVSVTILLFCLLGQKKKQGSMNT 321
Query: 699 GDEEERQA 706
+ + +A
Sbjct: 322 SIKPQNEA 329
>09_04_0334 + 16779883-16780150,16780618-16781828
Length = 492
Score = 30.7 bits (66), Expect = 4.7
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 171 PVNQPPVLKHHMKKLAITAGKAFRYIIPTDLFMDQEDGSNLTFTMYEAEN 220
PV +PP++ H KKL +T + ++Y I T M++ FT Y+ N
Sbjct: 415 PVARPPIVFLHGKKLLLTWNQVYQYDIQT-CRMEKIASGVEDFTCYDPRN 463
>06_03_1051 + 27215113-27215658
Length = 181
Score = 30.7 bits (66), Expect = 4.7
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 640 PALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVV--IVCMILLAGVIACVLYRRRRTGKMS 697
P P P+S + + S + Y V I+ A++ +VC + L ++ CV+ RR
Sbjct: 15 PEQQPMPPSSAAASSPSPPQLDYDVVVILAAMLCALVCALGLNSMLQCVVRCTRRAVADP 74
Query: 698 VGDEEERQA 706
VG E R+A
Sbjct: 75 VGWVEHRRA 83
>04_04_1156 -
31319747-31320085,31320556-31320706,31320795-31321026,
31321121-31321331,31321646-31321764,31321835-31322032,
31322163-31322364,31322456-31322832,31322937-31323007,
31326264-31326329,31326414-31326479,31326761-31326835,
31326944-31327018,31327115-31327186,31327683-31327904,
31328012-31328083,31328425-31328496,31329410-31329481,
31329716-31329896,31332132-31332237
Length = 992
Score = 30.3 bits (65), Expect = 6.2
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 648 NSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMSVGDEEERQAF 707
N+ SK G + ++ ++ ++ V I+ +I LA ++ + + RR K+S+ E+++ +
Sbjct: 591 NNNTSKAGVSTSKAGVIVGVVVGVTILGLIALAAIL--IWRQNRRKRKLSL---EQQELY 645
Query: 708 RSKGIP-VIFQDELEERTD 725
G P VI EL T+
Sbjct: 646 SIVGRPNVISYGELRSATE 664
>07_01_0860 - 7142913-7144895
Length = 660
Score = 29.9 bits (64), Expect = 8.2
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 635 VSKVPPALYPGAPNSQNSKTGSAAEQSYLVTFII---PAVVIVCMILLAGVIACVLYRRR 691
V PP P +P + + S++ + V + AVV+ + + + +A V RRR
Sbjct: 237 VPSPPPP--PASPTTASRPLPSSSSRRNTVAIAVGSASAVVVAVVAVASAALAIVTIRRR 294
Query: 692 RTGKMSVGDEEERQAFRS------KGIPVIFQDELEERTD 725
R + GD + ++ S +G+ + + EL++ T+
Sbjct: 295 RRSTTTAGDVSDDESVASLPPLPREGLYIFTKSELKQATN 334
>01_07_0171 +
41683670-41683872,41684386-41684483,41684614-41684692,
41684845-41685000,41685021-41685146,41686249-41686540,
41686978-41687053,41687295-41687392,41687523-41687665,
41688522-41688579,41689055-41689213,41689291-41689343,
41689978-41690212,41690317-41690403,41690607-41690711
Length = 655
Score = 29.9 bits (64), Expect = 8.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 573 SLPMDRCPKAEIEQLRKMIIVDDRGSRGGALRENVDQVFDKDFKVMSITLNPLG 626
++P R K +E ++I+DDR + GG R+ VD + + + I P+G
Sbjct: 397 AMPPRRSSKNFLEDYEVVLILDDRENFGGRSRKTVDNIHSQFRVPVEIKHLPVG 450
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,583,600
Number of Sequences: 37544
Number of extensions: 1033791
Number of successful extensions: 2371
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2362
Number of HSP's gapped (non-prelim): 17
length of query: 788
length of database: 14,793,348
effective HSP length: 88
effective length of query: 700
effective length of database: 11,489,476
effective search space: 8042633200
effective search space used: 8042633200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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