Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001935-TA|BGIBMGA001935-PA|IPR006644|Dystroglycan-type
cadherin-like, IPR008465|Dystroglycan
(788 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68011-1|CAA92012.1| 584|Caenorhabditis elegans Hypothetical pr... 100 8e-21
AC006684-7|AAF39961.1| 219|Caenorhabditis elegans Hypothetical ... 34 0.45
AL132948-16|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 33 0.78
AC006684-4|AAF39966.1| 181|Caenorhabditis elegans Hypothetical ... 33 0.78
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 31 2.4
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr... 31 3.2
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr... 31 3.2
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 31 4.2
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 31 4.2
U55366-5|AAA97983.1| 219|Caenorhabditis elegans Hypothetical pr... 31 4.2
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 31 4.2
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 31 4.2
AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical ... 30 5.5
AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical... 30 5.5
Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical pr... 30 7.3
U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical pr... 29 9.6
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 29 9.6
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 9.6
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 9.6
>Z68011-1|CAA92012.1| 584|Caenorhabditis elegans Hypothetical
protein T21B6.1 protein.
Length = 584
Score = 99.5 bits (237), Expect = 8e-21
Identities = 91/347 (26%), Positives = 157/347 (45%), Gaps = 38/347 (10%)
Query: 400 TRAPDTYPPVTRNQVDHITASAGHLLVYKVPEDTFFDPEDGGTRNLILSLRYSDRTEIPA 459
TR P+ N++ T + G + ++P +TF D EDG T + LS+ D E+
Sbjct: 232 TRRITDNKPILLNRLPSFTCTRGEMCDLRIPSETFKDAEDGDTFKMKLSVLALDNAEV-- 289
Query: 460 GHWLQFDANNQEFYGLPTTTDEGSVSYQLIAEDSSKKTAYDSLIVEVVKAPPIRPTVEFQ 519
W+ + +N+ G+P T G +Y+L A D + + A V V A P V+ +
Sbjct: 290 --WM-INESNKGLIGVPMRT--GEFNYRLEARDKAGQLASAPFQVNVKPALPTNHRVQLE 344
Query: 520 MTLEYPFLKLAFNAKNKRKVVEKLANLFGQKETDNIRIQSI--TNNPTSIIWYNTSLPMD 577
M P ++A N + +V LA + ++ IQ I NN T + + N S+P
Sbjct: 345 MDQPTP-QQMATNPSKRNLLVRALARSL-KAPVNSFTIQEIGYKNNKTMVAFSNNSIPYK 402
Query: 578 RCPKAEIEQLRKMIIVDDRGSRGGALRENVDQVFDKDFKVMSITLNPLGLCAEQNTKVSK 637
C +A I + +I+ + + + F V + T+ G C ++ ++S
Sbjct: 403 VCDEAAINAMASKMIIKQK----MRTKTEFVKTMGNQFYVRTATMIRHGNC-DETVEIST 457
Query: 638 VPPALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMS 697
P + + +S+ +L+ I A++I C AC+ +++GK
Sbjct: 458 TAPTV--ESIQEADSQLLLICVLLFLLLLIAVAIIIYC--------ACI----KKSGKKK 503
Query: 698 VGDEEERQAFRSKGIPVIFQDELEERTDTEPIHK-SPVIMREEKPPL 743
E + SKG+PV+F DE+EE +P H +P++ REE+PPL
Sbjct: 504 STSTE----YVSKGLPVVFPDEVEE---NDPTHAGTPMLAREERPPL 543
Score = 40.3 bits (90), Expect = 0.005
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 9/124 (7%)
Query: 162 TTETV-TFAMPVNQPPVLKHHMKKLAITAGKAFRYIIPTDLFMDQEDGSNLTFTMYEAEN 220
TTE + T + P+L + + T G+ IP++ F D EDG TF M +
Sbjct: 225 TTELIRTTRRITDNKPILLNRLPSFTCTRGEMCDLRIPSETFKDAEDGD--TFKMKLSVL 282
Query: 221 VPLSKNSWIQFIPSDLEVYGLPLEAHVSRWNFIVEAQNSAGLKARGPLDITVQQHKSGRT 280
+ W+ S+ + G+P+ +N+ +EA++ AG A P + V K
Sbjct: 283 ALDNAEVWM-INESNKGLIGVPM--RTGEFNYRLEARDKAGQLASAPFQVNV---KPALP 336
Query: 281 INHR 284
NHR
Sbjct: 337 TNHR 340
>AC006684-7|AAF39961.1| 219|Caenorhabditis elegans Hypothetical
protein T02H6.4 protein.
Length = 219
Score = 33.9 bits (74), Expect = 0.45
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 434 FFDPEDGGTRNLILSLRYSDRTEIPAGHW--LQFDANNQEFYGLPTTTDEGSVSYQLIAE 491
F +P DG + N I S + + E+P GHW +Q+ N G+ T +D G + I
Sbjct: 58 FCNPPDGVSNNAI-SNKLVIKPELPFGHWREIQWCPNGTVIIGIQTKSDRGRIDKAGITN 116
Query: 492 DSSK 495
++K
Sbjct: 117 FAAK 120
>AL132948-16|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 33.1 bits (72), Expect = 0.78
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 646 APNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMSVGDEEERQ 705
A S T S + + F++ VV++ + L+ G I + YR+R + EEE +
Sbjct: 813 AVGSSTVSTVSDESSDFPILFVVIPVVLILVALVIGGIVFIWYRKREEKRKEKEAEEENE 872
Query: 706 AF--RSKGIPVIFQDELEERTDTEPIHKSPVIMREEK 740
+ + I ++E + + E + K ++ E+
Sbjct: 873 KLIAERERMRAIKEEEERVKAEREKVKKEEERLKAEE 909
>AC006684-4|AAF39966.1| 181|Caenorhabditis elegans Hypothetical
protein T02H6.7 protein.
Length = 181
Score = 33.1 bits (72), Expect = 0.78
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 434 FFDPEDGGTRNLILSLRYSDRTEIPAGHW--LQFDANNQEFYGLPTTTDEGSVSYQLIAE 491
F +P DG T + I S + + E+P GHW +Q+ N G+ T +D G + I
Sbjct: 58 FCNPPDGLTNDAI-SNKLVVKPELPFGHWREIQWCPNGTVIIGIQTKSDRGRIDKAGITN 116
Query: 492 DSSK 495
++K
Sbjct: 117 FAAK 120
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 31.5 bits (68), Expect = 2.4
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 649 SQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMSVGDEEERQAFR 708
S ++ + +A E S +V +II VVI+ ++++ G+ ++ R++ S E A
Sbjct: 624 STSTASNAATEASNMVWYIIGGVVIL-LLVIVGIAVFLIMRKKSKPSSSEVPPAEPSAPE 682
Query: 709 SKGIPVIFQDELEERTDTEPIHK-SPVIMREEKPPLLPP 746
K P + + + D +P K PV + PP++ P
Sbjct: 683 PKPAP-----KPDPKPDPKPDPKPDPVPAKPVSPPVIVP 716
>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 31.1 bits (67), Expect = 3.2
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 640 PALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMS 697
P L+ +P SQ TGSA L+T ++ ++++ + + G I + R + +++
Sbjct: 876 PTLFTDSPPSQVMTTGSATPAIPLLT-VVAVLIVIAFVGIVGTIFLFFWNRTKKARLA 932
>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
protein F44G4.8 protein.
Length = 1367
Score = 31.1 bits (67), Expect = 3.2
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 640 PALYPGAPNSQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMS 697
P L+ +P SQ TGSA L+T ++ ++++ + + G I + R + +++
Sbjct: 876 PTLFTDSPPSQVMTTGSATPAIPLLT-VVAVLIVIAFVGIVGTIFLFFWNRTKKARLA 932
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 30.7 bits (66), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 287 MQFTLLKQYNNAIDWQIRALEGIVNLFRDTDMDHL 321
M F LK+ +N +++ + G+V L RDTD D L
Sbjct: 671 MTFHSLKKKSNRFTYRMGSSLGVVKLLRDTDFDRL 705
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 30.7 bits (66), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 287 MQFTLLKQYNNAIDWQIRALEGIVNLFRDTDMDHL 321
M F LK+ +N +++ + G+V L RDTD D L
Sbjct: 671 MTFHSLKKKSNRFTYRMGSSLGVVKLLRDTDFDRL 705
>U55366-5|AAA97983.1| 219|Caenorhabditis elegans Hypothetical
protein F41F3.1 protein.
Length = 219
Score = 30.7 bits (66), Expect = 4.2
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 11/90 (12%)
Query: 609 QVFDKDFKVMSITLNPLGLCAEQNTKVSKVPPALYPGAPNSQNSKTGSAAEQS------Y 662
Q+FD DF+ M +E+N + K A + S+++K GS++E Y
Sbjct: 4 QLFDDDFRRMQAEHARF---SEENERKMKEMQADHENF--SRSNKFGSSSEDISSDTMLY 58
Query: 663 LVTFIIPAVVIVCMILLAGVIACVLYRRRR 692
++ I A +++ +I L V C +Y RRR
Sbjct: 59 IILIPIGACILIGIISLCIVFGCRIYHRRR 88
Score = 29.9 bits (64), Expect = 7.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 649 SQNSKTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRR 692
S N+ ++ Y++ I A V++ +I L V C +Y RRR
Sbjct: 165 SSNTSEDISSNMLYIILIPIGACVLIGIIALCIVFGCRIYNRRR 208
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 30.7 bits (66), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 287 MQFTLLKQYNNAIDWQIRALEGIVNLFRDTDMDHL 321
M F LK+ +N +++ + G+V L RDTD D L
Sbjct: 671 MTFHSLKKKSNRFTYRMGSSLGVVKLLRDTDFDRL 705
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 30.7 bits (66), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 287 MQFTLLKQYNNAIDWQIRALEGIVNLFRDTDMDHL 321
M F LK+ +N +++ + G+V L RDTD D L
Sbjct: 671 MTFHSLKKKSNRFTYRMGSSLGVVKLLRDTDFDRL 705
>AL132853-4|CAB60442.1| 1293|Caenorhabditis elegans Hypothetical
protein Y80D3A.8 protein.
Length = 1293
Score = 30.3 bits (65), Expect = 5.5
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 664 VTFIIPAVVIVCMILLAGVIACVLYRRRRTGKMSVGDEEERQAFRSKGIPVIFQ-DELEE 722
++ +IP V+I+ +++ G++ + YR+R + EEER+ K I + +E+EE
Sbjct: 866 LSVVIPVVLILVALVIGGIVF-IWYRKREEKRKEEEAEEERKREEEKLIAERKRIEEVEE 924
Query: 723 RTDTEPIHKSPV 734
+ E K +
Sbjct: 925 QRKREAEDKEKI 936
>AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical
protein Y71H2AM.1 protein.
Length = 337
Score = 30.3 bits (65), Expect = 5.5
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 527 LKLAFNAKNKRKVVEKLANLFGQKETDNIRIQSITNNPTSIIWYNTSLPMDRCPKAEIEQ 586
+KLA N +N ++ +A G +++ +I S+ W +P++ C IE
Sbjct: 61 IKLA-NIQNPELEIDGIAYTKGPGMGAPLQVGAIVARTLSLTWKKPIIPVNHCV-GHIEM 118
Query: 587 LRKMIIVDDRGS---RGGALRENVDQVFDKDFKVMSITLN-PLGLCAEQNTKVSKVPPAL 642
R + D+ GG V K +++ T++ +G C ++ +V K+P A
Sbjct: 119 GRLITGADNPVVLYVSGG--NTQVISYTKKRYRIFGETIDIAVGNCLDRFARVLKLPNAP 176
Query: 643 YPGAPNSQNSKTG 655
PG Q +K G
Sbjct: 177 SPGYNIEQLAKNG 189
>Z68341-4|CAA92767.2| 1266|Caenorhabditis elegans Hypothetical
protein F01G4.3 protein.
Length = 1266
Score = 29.9 bits (64), Expect = 7.3
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 504 VEVVKAPPIRPTVEFQMTLEYP---FLKLAFNAKNKRKVVEKLANLFGQKETDNIRIQSI 560
+E + PP P + F +T + P F +A N + + ++ AN+ Q +++ I +
Sbjct: 15 LETLNWPPCAP-IPFHITKQNPSAEFYNVADNLDSLLQPIDAPANIIAQVDSNGKIIGFV 73
Query: 561 TNNPTSIIWYNTSLPMDRCP 580
N + NTS+ ++R P
Sbjct: 74 ENERIIVGSANTSMSINRAP 93
>U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical
protein F55A4.10 protein.
Length = 633
Score = 29.5 bits (63), Expect = 9.6
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 644 PGAPNSQNS----KTGSAAEQSYLVTFIIPAVVIVCMILLAGVIACVLYRRRR 692
PG NS N+ TG ++++ I AV+++ ++ LA + C+++ RR+
Sbjct: 272 PGMGNSFNNFDTLNTGQSSKKRSFSMIFITAVILIVLVFLALLGFCLMFLRRK 324
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 29.5 bits (63), Expect = 9.6
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 276 KSGRTIN--HRFIMQFTLLKQYNNAIDWQIRALEGIVNLFRDTDMDHLTVLNATQTGDLC 333
KS RT N HR ++ + ++NAI W ++ ++ +V + V+ +T +
Sbjct: 1470 KSKRTANAQHRIVVLQGMSNTFHNAITWSLKKVKKLVGDAEAKAYADVEVVKQDETNEQV 1529
Query: 334 EFVWTNDTL 342
+ NDT+
Sbjct: 1530 MTIIDNDTI 1538
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 29.5 bits (63), Expect = 9.6
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 276 KSGRTIN--HRFIMQFTLLKQYNNAIDWQIRALEGIVNLFRDTDMDHLTVLNATQTGDLC 333
KS RT N HR ++ + ++NAI W ++ ++ +V + V+ +T +
Sbjct: 1470 KSKRTANAQHRIVVLQGMSNTFHNAITWSLKKVKKLVGDAEAKAYADVEVVKQDETNEQV 1529
Query: 334 EFVWTNDTL 342
+ NDT+
Sbjct: 1530 MTIIDNDTI 1538
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 29.5 bits (63), Expect = 9.6
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 276 KSGRTIN--HRFIMQFTLLKQYNNAIDWQIRALEGIVNLFRDTDMDHLTVLNATQTGDLC 333
KS RT N HR ++ + ++NAI W ++ ++ +V + V+ +T +
Sbjct: 1470 KSKRTANAQHRIVVLQGMSNTFHNAITWSLKKVKKLVGDAEAKAYADVEVVKQDETNEQV 1529
Query: 334 EFVWTNDTL 342
+ NDT+
Sbjct: 1530 MTIIDNDTI 1538
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,655,222
Number of Sequences: 27539
Number of extensions: 868940
Number of successful extensions: 2315
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2292
Number of HSP's gapped (non-prelim): 30
length of query: 788
length of database: 12,573,161
effective HSP length: 87
effective length of query: 701
effective length of database: 10,177,268
effective search space: 7134264868
effective search space used: 7134264868
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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