Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001934-TA|BGIBMGA001934-PA|IPR008465|Dystroglycan
         (318 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 288  LTRVKVKIKPKNVSRTCSKSPSTTV 312
            +T +K   KPK    + + SPS TV
Sbjct: 1544 VTELKQAFKPKGYLLSAAVSPSKTV 1568


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 174 KIVPRQRIRALMQLANFMALDGDEFWMEPYKTETHPDTI 212
           +I  +Q + AL+   + ++   +E W +  +T   P T+
Sbjct: 93  QISQQQSVTALLDTGSEVSCISEEVWSKLIETGNKPPTL 131


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,426
Number of Sequences: 317
Number of extensions: 2578
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 318
length of database: 114,650
effective HSP length: 57
effective length of query: 261
effective length of database: 96,581
effective search space: 25207641
effective search space used: 25207641
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)