Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001934-TA|BGIBMGA001934-PA|IPR008465|Dystroglycan
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   2e-07
SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)                    31   0.94 
SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_54440| Best HMM Match : P53_tetramer (HMM E-Value=8.4)              30   2.9  

>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 58/253 (22%), Positives = 101/253 (39%), Gaps = 39/253 (15%)

Query: 56  VPDTLAYVGHLFRMEIPKEAFSGKVVAYKVRSDHGRRTPNWLAVDSRHGLISGIPQYQDI 115
           +P+ + YVG  F  +IP + F+ K+   ++     R  PNWLA D     + G+P  +D+
Sbjct: 519 LPNAITYVGMAFIYKIPSKIFNCKLDYIEISEGSSRTLPNWLAYDEHKQELYGVPSMEDL 578

Query: 116 XXX----XXXXXXXXXXKGLTATDSFTIEVKKGEDKPHSK----------------YGTC 155
                              +    SFTI V     +PH+                 +G+ 
Sbjct: 579 GTSYILIVAIADDSLDTGRICGMKSFTINVVAVHHQPHASVIMMASSVALESQVLHFGSG 638

Query: 156 IGDEN-------RLVL-LILVDGAFHKIVPRQRIRALMQLANFMALDGDEFWM------E 201
             +EN       +L+L  IL+     ++   +R+  L + A  + +  ++  +       
Sbjct: 639 RMNENLFCTPGAQLILGTILLSANLQQVSGHERMMILNKTAQHLKVTTEKMALFSGEVDH 698

Query: 202 PYKTE-THPDTILSGIGSSLRKRGDATTAIYLNVGCGNKLWDRHKVLVAGLREQSRDGTL 260
           P  ++   P  I SG G     +G  +   +  +GCG    +     +  L   S+DGT+
Sbjct: 699 PLVSQLKDPSVIKSGAGDGRYSKGKRSLLTWA-LGCGALKLNSD---LLDLETSSKDGTI 754

Query: 261 EQLLRLPVIGWRL 273
             LL  PVIGW +
Sbjct: 755 SMLLGHPVIGWHV 767


>SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 162 LVLLILVDGAFHKIVPRQRIRALMQLANFMALDGDEFWMEPYKTETHPDTILSGIGSSLR 221
           L L ++     H++VP++R R L    + +A+     W E ++T+ HP    + +G++++
Sbjct: 764 LCLFVVCQKKLHRLVPKRRFRILC-FFSIVAICIIMVWTELHQTKAHPH---NALGTNVQ 819

Query: 222 KRGDATTAIYLNVGCGNKLWDR 243
            R    T + L    G  +  R
Sbjct: 820 PRDALRTNVQLRNALGTNVQPR 841


>SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)
          Length = 202

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 144 GEDKPHSKYGTCIGDENRLVLLILVDGAF--HKIVPRQRIRALMQLANFMALDGDEFWME 201
           G D   S++GT +    RL+ +    G     K+VP++ IR  ++ + ++    D F  +
Sbjct: 75  GNDYAASEFGTRLNMSTRLIDMWAAMGLVSDRKVVPKETIRLAVKCSRYVCSKSDLFPAQ 134

Query: 202 PYKTE 206
           P K E
Sbjct: 135 PCKRE 139


>SB_10615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1884

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 83  YKVRSDHGRRTPNWLAVDSRHGLISGIPQYQD 114
           +K+  +  +  P+WLA+D     + G+P ++D
Sbjct: 53  FKITEEGKKTLPHWLALDESTNTLEGVPSWRD 84


>SB_54440| Best HMM Match : P53_tetramer (HMM E-Value=8.4)
          Length = 146

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 87  SDHGRRT-PNWLAVDSRHGLISGIPQYQD 114
           ++ G++T P+WLA+D     + G+P ++D
Sbjct: 2   TEEGKKTLPHWLALDESTNTLEGVPSWRD 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,097,342
Number of Sequences: 59808
Number of extensions: 387815
Number of successful extensions: 785
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 6
length of query: 318
length of database: 16,821,457
effective HSP length: 82
effective length of query: 236
effective length of database: 11,917,201
effective search space: 2812459436
effective search space used: 2812459436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)