GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001934-TA|BGIBMGA001934-PA|IPR008465|Dystroglycan
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939...    29   6.5  
11_06_0129 - 20397179-20397537,20397749-20400497                       29   6.5  
11_06_0728 + 26717018-26717306,26717494-26717598,26717789-267178...    28   8.6  

>11_06_0490 -
           24293218-24293373,24293454-24293521,24293845-24293986,
           24294079-24294699,24294791-24294871,24295002-24295072,
           24296106-24296176,24296568-24296675,24296786-24297024,
           24297493-24297657
          Length = 573

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 181 IRALMQLANFMALDGDEFWMEPYKTETHPD---TILSGIGSSLRKRGDATTAIYLNVGCG 237
           +R++ + +N MALDG  F   P K     D   ++ + +G S         A+ L  G  
Sbjct: 285 MRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSA 344

Query: 238 NKLWDRHKVLVAGLREQSRDGTLEQLLRL--PVIGWRLLAVKPT 279
             L    ++ V GL     +  + +LL    P+ G+ L+  + T
Sbjct: 345 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRET 388


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 149 HSKYGTCIGDENRLVLLILVDGAFHKIVPRQ--RIRALMQLANFMALDG 195
           H K    +G+ + L ++IL    F+ IVP++  R+R L QL     L G
Sbjct: 304 HGKIPVSLGNSSNLSMIILGANLFNGIVPQEIGRLRKLEQLVLTQTLVG 352


>11_06_0728 +
           26717018-26717306,26717494-26717598,26717789-26717870,
           26717979-26718055,26719087-26719151,26719261-26719302,
           26719385-26719444,26719583-26720203,26720315-26720450,
           26720667-26720734,26720811-26720948
          Length = 560

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 181 IRALMQLANFMALDGDEFWMEPYKTETHPD---TILSGIGSSLRKRGDATTAIYLNVGCG 237
           +R++ + +N MALDG  F   P K     D   ++ + +G S         A+ L  G  
Sbjct: 280 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSA 339

Query: 238 NKLWDRHKVLVAGLREQSRDGTLEQLLRL--PVIGWRLLAVKPT 279
             L    ++ V GL     +  + +LL    P+ G+ L+  + T
Sbjct: 340 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRET 383


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,778,522
Number of Sequences: 37544
Number of extensions: 340256
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 608
Number of HSP's gapped (non-prelim): 5
length of query: 318
length of database: 14,793,348
effective HSP length: 82
effective length of query: 236
effective length of database: 11,714,740
effective search space: 2764678640
effective search space used: 2764678640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)