GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001934-TA|BGIBMGA001934-PA|IPR008465|Dystroglycan
         (318 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014616-1|AAH14616.1|  895|Homo sapiens dystroglycan 1 (dystrop...    66   2e-10
BC012740-1|AAH12740.1|  895|Homo sapiens dystroglycan 1 (dystrop...    66   2e-10
L19711-1|AAA81779.1|  895|Homo sapiens dystroglycan protein.           65   4e-10
BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S. cerevi...    32   3.1  
AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.       32   3.1  

>BC014616-1|AAH14616.1|  895|Homo sapiens dystroglycan 1
           (dystrophin-associated glycoprotein 1) protein.
          Length = 895

 Score = 65.7 bits (153), Expect = 2e-10
 Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 29/262 (11%)

Query: 55  GVPDTLAYVGHLFRMEIPKEAFSGKVVAYKVRSDHGRRTPNWLAVDSRHGLISGIPQYQD 114
           G+PD  A VG  FR+ IP +  +      KV +      P+WL  DS+   + G+P   D
Sbjct: 66  GIPDGTAVVGRSFRVTIPTDLIASSGDIIKVSAAGKEALPSWLHWDSQSHTLEGLPLDTD 125

Query: 115 IXXXXXXXXXXXXXKG---LTATDS-FTIEVKKGEDKPHSKYGT------------CIGD 158
                              +  T S F+IEV   +        T            C  D
Sbjct: 126 KGVHYISVSATRLGANGSHIPQTSSVFSIEVYPEDHSELQSVRTASPDPGEVVSSACAAD 185

Query: 159 ENRLVLLILVDGAFHKIVPRQRIRALMQLANFMALDGDEFWMEPYKTETHPD--TILSGI 216
           E   VL +++D    K+ P+QRI  L ++ +F  ++     + P       D    ++G 
Sbjct: 186 EPVTVLTVILDADLTKMTPKQRIDLLHRMRSFSEVELHNMKLVPVVNNRLFDMSAFMAGP 245

Query: 217 GSSLRKRGDATTAIYLNVGCG---NKLWDRHKVLVAGLREQSRDGTLEQLLRLPVIGWRL 273
           G++ +K  +    +   +GC    N + D H     G+   +R+G +   L  PV+GW +
Sbjct: 246 GNA-KKVVENGALLSWKLGCSLNQNSVPDIH-----GVEAPAREGAMSAQLGYPVVGWHI 299

Query: 274 LAVKPTF--RVKRQVTLTRVKV 293
              KP    RV+RQ+  T   V
Sbjct: 300 ANKKPPLPKRVRRQIHATPTPV 321


>BC012740-1|AAH12740.1|  895|Homo sapiens dystroglycan 1
           (dystrophin-associated glycoprotein 1) protein.
          Length = 895

 Score = 65.7 bits (153), Expect = 2e-10
 Identities = 66/262 (25%), Positives = 106/262 (40%), Gaps = 29/262 (11%)

Query: 55  GVPDTLAYVGHLFRMEIPKEAFSGKVVAYKVRSDHGRRTPNWLAVDSRHGLISGIPQYQD 114
           G+PD  A VG  FR+ IP +  +      KV +      P+WL  DS+   + G+P   D
Sbjct: 66  GIPDGTAVVGRSFRVTIPTDLIASSGDIIKVSAAGKEALPSWLHWDSQSHTLEGLPLDTD 125

Query: 115 IXXXXXXXXXXXXXKG---LTATDS-FTIEVKKGEDKPHSKYGT------------CIGD 158
                              +  T S F+IEV   +        T            C  D
Sbjct: 126 KGVHYISVSATRLGANGSHIPQTSSVFSIEVYPEDHSELQSVRTASPDPGEVVSSACAAD 185

Query: 159 ENRLVLLILVDGAFHKIVPRQRIRALMQLANFMALDGDEFWMEPYKTETHPD--TILSGI 216
           E   VL +++D    K+ P+QRI  L ++ +F  ++     + P       D    ++G 
Sbjct: 186 EPVTVLTVILDADLTKMTPKQRIDLLHRMRSFSEVELHNMKLVPVVNNRLFDMSAFMAGP 245

Query: 217 GSSLRKRGDATTAIYLNVGCG---NKLWDRHKVLVAGLREQSRDGTLEQLLRLPVIGWRL 273
           G++ +K  +    +   +GC    N + D H     G+   +R+G +   L  PV+GW +
Sbjct: 246 GNA-KKVVENGALLSWKLGCSLNQNSVPDIH-----GVEAPAREGAMSAQLGYPVVGWHI 299

Query: 274 LAVKPTF--RVKRQVTLTRVKV 293
              KP    RV+RQ+  T   V
Sbjct: 300 ANKKPPLPKRVRRQIHATPTPV 321


>L19711-1|AAA81779.1|  895|Homo sapiens dystroglycan protein.
          Length = 895

 Score = 64.9 bits (151), Expect = 4e-10
 Identities = 66/262 (25%), Positives = 105/262 (40%), Gaps = 29/262 (11%)

Query: 55  GVPDTLAYVGHLFRMEIPKEAFSGKVVAYKVRSDHGRRTPNWLAVDSRHGLISGIPQYQD 114
           G+PD  A VG  FR+ IP +  +      KV +      P+WL  DS+   + G+P   D
Sbjct: 66  GIPDGTAVVGRSFRVTIPTDLIASSGDIIKVSAAGKEALPSWLHWDSQSHTLEGLPLDTD 125

Query: 115 IXXXXXXXXXXXXXKG---LTATDS-FTIEVKKGEDKPHSKYGT------------CIGD 158
                              +  T S F+IEV   +        T            C  D
Sbjct: 126 KGVHYISVSATRLGANGSHIPQTSSVFSIEVYPEDHSDLQSVRTASPDPGEVVSSACAAD 185

Query: 159 ENRLVLLILVDGAFHKIVPRQRIRALMQLANFMALDGDEFWMEPYKTETHPD--TILSGI 216
           E   VL +++D    K+ P+QRI  L ++ +F  ++     + P       D    ++G 
Sbjct: 186 EPVTVLTVILDADLTKMTPKQRIDLLHRMRSFSEVELHNMKLVPVVNNRLFDMSAFMAGP 245

Query: 217 GSSLRKRGDATTAIYLNVGCG---NKLWDRHKVLVAGLREQSRDGTLEQLLRLPVIGWRL 273
           G+  +K  +    +   +GC    N + D H     G+   +R+G +   L  PV+GW +
Sbjct: 246 GNP-KKVVENGALLSWKLGCSLNQNSVPDIH-----GVEAPAREGAMSAQLGYPVVGWHI 299

Query: 274 LAVKPTF--RVKRQVTLTRVKV 293
              KP    RV+RQ+  T   V
Sbjct: 300 ANKKPPLPKRVRRQIHATPTPV 321


>BC013317-1|AAH13317.1|  503|Homo sapiens NMD3 homolog (S.
           cerevisiae) protein.
          Length = 503

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 151 KYGTCIGDENRLVLLILVDGAFHKIVPRQRIRALMQLANFMALDGDEFWMEPYKTETHP 209
           K    +G+ N++ + I V  A H I P       +Q+A+   +DG  FW  P+ +  HP
Sbjct: 260 KLAQSLGNMNQICVCIRVTSAIHLIDPNT-----LQVAD---IDGSTFWSHPFNSLCHP 310


>AF132941-1|AAD27716.1|  503|Homo sapiens CGI-07 protein protein.
          Length = 503

 Score = 31.9 bits (69), Expect = 3.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 8/59 (13%)

Query: 151 KYGTCIGDENRLVLLILVDGAFHKIVPRQRIRALMQLANFMALDGDEFWMEPYKTETHP 209
           K    +G+ N++ + I V  A H I P       +Q+A+   +DG  FW  P+ +  HP
Sbjct: 260 KLAQSLGNMNQICVCIRVTSAIHLIDPNT-----LQVAD---IDGSTFWSHPFNSLCHP 310


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,160,758
Number of Sequences: 224733
Number of extensions: 1572125
Number of successful extensions: 2008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1999
Number of HSP's gapped (non-prelim): 8
length of query: 318
length of database: 73,234,838
effective HSP length: 90
effective length of query: 228
effective length of database: 53,008,868
effective search space: 12086021904
effective search space used: 12086021904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)