GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001934-TA|BGIBMGA001934-PA|IPR008465|Dystroglycan
         (318 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094727-1|AAM11080.1|  403|Drosophila melanogaster GH23271p pro...    33   0.52 
AE014297-4631|AAF57067.2|  403|Drosophila melanogaster CG1539-PB...    33   0.52 
AY060984-1|AAL28532.1|  730|Drosophila melanogaster GM14169p pro...    31   2.1  
AF123262-1|AAD22056.1|  730|Drosophila melanogaster TXBP181-like...    31   2.1  
AE013599-845|AAF58955.1|  730|Drosophila melanogaster CG2072-PA ...    31   2.1  

>AY094727-1|AAM11080.1|  403|Drosophila melanogaster GH23271p
           protein.
          Length = 403

 Score = 33.1 bits (72), Expect = 0.52
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 266 LPVIGWRLLAVKPTFRVKRQVTLTRVKVKIKPKNVSRTCSKSPSTTVRNFHG 317
           LPV  ++ + ++P  +VKR+     V +++K KN S T   +  TT    +G
Sbjct: 5   LPVAEFQQIKLRPVPKVKRRAPQPPVSLRLKHKNTSATTKTTTLTTPAKLYG 56


>AE014297-4631|AAF57067.2|  403|Drosophila melanogaster CG1539-PB,
           isoform B protein.
          Length = 403

 Score = 33.1 bits (72), Expect = 0.52
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 266 LPVIGWRLLAVKPTFRVKRQVTLTRVKVKIKPKNVSRTCSKSPSTTVRNFHG 317
           LPV  ++ + ++P  +VKR+     V +++K KN S T   +  TT    +G
Sbjct: 5   LPVAEFQQIKLRPVPKVKRRAPQPPVSLRLKHKNTSATTKTTTLTTPAKLYG 56


>AY060984-1|AAL28532.1|  730|Drosophila melanogaster GM14169p
           protein.
          Length = 730

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 33  EFQVELTANHSEIAKNGLRRLWGVPDTLAYVGHL 66
           EF+++  ++  E+ K    RL  VPD LA V HL
Sbjct: 256 EFEIQSYSDWKEVVKTSRERLASVPDLLAEVEHL 289


>AF123262-1|AAD22056.1|  730|Drosophila melanogaster TXBP181-like
           protein protein.
          Length = 730

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 33  EFQVELTANHSEIAKNGLRRLWGVPDTLAYVGHL 66
           EF+++  ++  E+ K    RL  VPD LA V HL
Sbjct: 256 EFEIQSYSDWKEVVKTSRERLASVPDLLAEVEHL 289


>AE013599-845|AAF58955.1|  730|Drosophila melanogaster CG2072-PA
           protein.
          Length = 730

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 33  EFQVELTANHSEIAKNGLRRLWGVPDTLAYVGHL 66
           EF+++  ++  E+ K    RL  VPD LA V HL
Sbjct: 256 EFEIQSYSDWKEVVKTSRERLASVPDLLAEVEHL 289


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,410,916
Number of Sequences: 52641
Number of extensions: 551869
Number of successful extensions: 921
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 916
Number of HSP's gapped (non-prelim): 5
length of query: 318
length of database: 24,830,863
effective HSP length: 85
effective length of query: 233
effective length of database: 20,356,378
effective search space: 4743036074
effective search space used: 4743036074
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)