Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001933-TA|BGIBMGA001933-PA|undefined
(256 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 29 0.87
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 29 0.87
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 28 1.2
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 1.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 28 1.5
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 28 1.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 2.0
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 27 2.0
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.2
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 6.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 6.2
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ... 25 8.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.2
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 8.2
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 8.2
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.7 bits (61), Expect = 0.87
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 149 NRALDNSNTDTTSVGVIYNTPNGDRTL-KIEEIARKNGDTDKAISNSNPGNA 199
NRALDN NT + V + P + L K+E+ AR + ++ +S NA
Sbjct: 180 NRALDNKNTGDSQKKVGFFKPKSNAQLTKLEDEARLKAENAESDMHSKIENA 231
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 28.7 bits (61), Expect = 0.87
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 160 TSVGVIYNTPNGDRTLKIEEIARKNGDTD--KAISNSNPGNAIPSGTTNRGNVTSNVETT 217
T G NTP DR+L I +++R + + +S SNP AI S + +SN +
Sbjct: 446 TRPGSATNTPQSDRSLDINDLSRSSSYSRHLSHVSLSNPDFAIGSPMSQD---SSNYSSP 502
Query: 218 ILDLRRKDNTNNTEP 232
L R+ ++N ++P
Sbjct: 503 -LHRRKASDSNFSDP 516
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 164 VIYNTPNGDRTLK-IEEIARKNGDTDKAISNSNPGNAIPSGTTNR---GNVTSNVETTIL 219
+I+N TL+ I+EIAR N + +S + P NAI ++ TS T
Sbjct: 81 LIFNAKTKTFTLEHIDEIARLNALRNPKVSKTVPSNAITQSDNSQISESKSTSQSAVTTN 140
Query: 220 DLRRKD 225
RRK+
Sbjct: 141 STRRKE 146
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 135 NNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDK 189
++ST + + +++ NSNTDTT+ G + + + T E + K+ D+ K
Sbjct: 299 SDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSK 353
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 27.9 bits (59), Expect = 1.5
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 134 SNNSTENGASEIGNTNRALDN----SNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDK 189
+ N+T G S GN N A N +N+ T G+ +T + T + + +
Sbjct: 506 ATNATGTGGSLFGNANTAGSNMFGSANSSTPGTGLFGSTQTNNATSNTGTGLFGSNNANT 565
Query: 190 AISNSNPGNAIPSGTTNR--GNVTS-NVETTILDLRRKDNTNN 229
+ + N PS TT GN T+ TT L NTNN
Sbjct: 566 TNTGGSLFNK-PSTTTGGLFGNTTAQQPSTTTSGLFGASNTNN 607
>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 422
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 178 EEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRRKDNTNN 229
+++ R++ T+ ++ P +PS NV+S+ + + +R D++ N
Sbjct: 356 QKVRRRSHPTNPTVNIPQPAQTVPSNDNGSFNVSSSSSSQTSNKKRHDHSYN 407
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 145 IGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKI 177
+G TN +LDN N T+ VG + ++ N D TL +
Sbjct: 1 MGETNSSLDNEN--TSFVGKLSSSSNVDPTLNL 31
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 16/69 (23%)
Query: 173 RTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTIL----------DLR 222
+ ++I +NGD + SN + NAI + TT++GN N E T+L D+R
Sbjct: 453 KEIQILRHTSQNGDQE---SNESSKNAITTKTTDKGN---NKENTMLNDGSTAPAKNDIR 506
Query: 223 RKDNTNNTE 231
NTNN +
Sbjct: 507 NVINTNNLD 515
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 167 NTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRRKDN 226
+TP D+TL+ NG+ + +N S + +V+S++ T LD +++ +
Sbjct: 268 STPT-DQTLRPPNPPAANGNATPVTAVNNVSAVADSPQSTGSSVSSSLPTLSLDFKQEYS 326
Query: 227 TNN 229
NN
Sbjct: 327 GNN 329
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 6.2
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 136 NSTE-NGASE-IGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAIS- 192
+STE G E +T+ L N++T T+ + L + + GD ++ S
Sbjct: 641 DSTEIEGIKESFASTDTGLQNNSTATSE------NKRSESELTMSNVLSNEGDRNEEGSE 694
Query: 193 -NSNPGNAIPSGTTNRGNVTSNVETTI 218
NS+ + I GT + V+ N ETT+
Sbjct: 695 INSSQPSTINHGTDHINIVSENKETTV 721
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 172 DRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVT 211
D+++ E ARK+ + DKAI ++ + PS T +R +++
Sbjct: 886 DKSVTKAEQARKSIEIDKAIIRNSQSTSRPSLTASRPSLS 925
>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 8.2
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 6/102 (5%)
Query: 133 MSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAIS 192
+S N + E +A ++ + N P G K I KN + K S
Sbjct: 36 VSPNEPKLSGKEAKALKKARKQASRRAKAEAAAANNPPGVSEEKKVAIPNKNSNQQKKAS 95
Query: 193 NSNPGNAIPSGTTN--RGNVTSNVETTI---LDLRRKDNTNN 229
NP N+ P N + + +I LD RR+ T N
Sbjct: 96 KQNPQNS-PETDANLQEKKIFEEKQVSIFSHLDWRRRRTTEN 136
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 204 TTNRGNVTSNVETTILDLRRKDNTNNTEPPPLMTDPQVFRERVAPF 249
+ N G + + T+I DL+ N PP +T PQ + + F
Sbjct: 266 SNNCGFLLPSNSTSIKDLKNVKKGNRLNSPPFITIPQSIKNTNSNF 311
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/88 (17%), Positives = 38/88 (43%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
S +S+ + S T+ +SN +TT+ + T + + T + ++ IS
Sbjct: 530 SFSSSPSPTSSFSGTSALSSSSNEETTTTTQVTYTTSPEETTTTMTTTTCSSRPEETIST 589
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILDL 221
+ + + ++ ++TS ++ L +
Sbjct: 590 VSTTSTVSESGSSSASITSTYPSSTLSM 617
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.4 bits (53), Expect = 8.2
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 136 NSTENG-ASEIGNTNRALDNS-NTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
N NG AS++ + N N T V P G K E + + GDT K+
Sbjct: 309 NKGVNGVASQVNKGMNGVANQVNKGVTGVASQVRKPVGKLEKKFENLEKSIGDTLKSSIR 368
Query: 194 SNP 196
S+P
Sbjct: 369 SSP 371
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,002,730
Number of Sequences: 5004
Number of extensions: 41228
Number of successful extensions: 158
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 18
length of query: 256
length of database: 2,362,478
effective HSP length: 71
effective length of query: 185
effective length of database: 2,007,194
effective search space: 371330890
effective search space used: 371330890
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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