Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001933-TA|BGIBMGA001933-PA|undefined
(256 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 43 3e-04
10_08_0186 - 15582925-15584334 33 0.30
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668... 31 1.2
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 30 1.6
03_01_0617 + 4532651-4532893,4534713-4534939,4535077-4535150,453... 30 1.6
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524 29 2.8
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 29 4.9
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 28 6.5
08_02_1204 - 25267546-25268219,25268319-25268452,25269567-252696... 28 6.5
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 28 8.5
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873... 28 8.5
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 1 FFYLYHFSFYAYHYRFNGQYSSLALVTSWLFIQHSMLYFFHHYELPVI 48
FF LY F+ Y + + +S LA + F+QH +LYF++ +E+P +
Sbjct: 542 FFLLYFLVFHIYFFSYTYGFSYLAFSATAAFMQHLILYFWNRFEVPAL 589
>10_08_0186 - 15582925-15584334
Length = 469
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 169 PNGDRTL--KIEEIARKNGDTD-KAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRRKD 225
P G R L +++ ++ GD +A + NPG+ + + + E ++ +L R
Sbjct: 206 PRGVRELARSMKDFPQRRGDDGWEAFTRDNPGDCLAFARFRQSREAIDAEDSVAELERAL 265
Query: 226 NTNNTEPPPLMTDPQVFR-ERVAPFREADDLD 256
+TEP + ++ R R A E DD D
Sbjct: 266 EVVDTEPARARVEAELDRARRKAAGEEVDDED 297
>09_04_0687 +
19465594-19465780,19465994-19466022,19466731-19466803,
19467237-19467311,19467583-19467644,19467727-19467795,
19468447-19468475,19468553-19468760,19468867-19469100,
19469591-19470598
Length = 657
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 131 GDMSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKA 190
GD+ +N + + + N + L SNT+TT + P GD +L + K D K
Sbjct: 418 GDLRDNKLPS-PTRLSNAHSVLKESNTNTTDTRTMLVLPLGDLSLPGYHDS-KASDNKKV 475
Query: 191 ISNSNPGNAIP-SGTTNRGNVT------SNVETTILDLRRKDNTNNTEPPPLMTDPQV 241
S G +P S +T +V S+ + +R NT+ PPL++ P++
Sbjct: 476 KRGSFSGPIVPRSRSTENIDVVSVPPRHSSSHQPSIHVRVSPNTS----PPLLSSPKI 529
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 30.3 bits (65), Expect = 1.6
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 131 GDMSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPN-GDRTLKIEEIARKNGD-TD 188
GD ++ E ++ + +++ NSN++ ++V NT + G+R KI+++ G T+
Sbjct: 478 GDKPDSYAERADAKCNTSKKSIINSNSENSNVQP--NTASVGNRNSKIDDVNSNTGSITN 535
Query: 189 KAISNSNPGNAIPSGTTNRGNVTSNVETTILDL-RRKDNTNNTE 231
K N+ +I S NR T +V+ I + R D++++T+
Sbjct: 536 KDSKNTVIKPSIGS-FVNRNAETVDVKPNIGSITSRGDSSSDTK 578
>03_01_0617 +
4532651-4532893,4534713-4534939,4535077-4535150,
4535753-4535809,4535940-4536280,4536979-4537047,
4537152-4537219,4537404-4539569,4540101-4540178,
4540326-4540437,4540722-4540772,4540886-4540936
Length = 1178
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 164 VIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRR 223
VI T + + + + N T A+S PG +IPS T G+ +N T DL +
Sbjct: 203 VIAPTKSVSKVKLSNSVPKANFSTSPALSPEQPGPSIPSVPT--GSDVNNEVITPFDLNK 260
Query: 224 KDNTNNTEPPP 234
+N+ + P
Sbjct: 261 DENSKVEKSTP 271
>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
Length = 652
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/68 (20%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 165 IYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETTILDLRRK 224
+ +T +G+ +++++ N D+ +++NP N + S GN ++ ++ + RR
Sbjct: 165 VSSTASGNM-VELDKSKNINSDSSDTTTDTNPQNGLQSDHQKGGNGKADKQSKVKQPRRN 223
Query: 225 DNTNNTEP 232
+ N ++P
Sbjct: 224 QSDNVSKP 231
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 132 DMSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAI 191
D+S +S + SE GNT R SN SVG+ + D + ++ + +
Sbjct: 1188 DISQSSVQTTGSESGNTRR----SNGPVRSVGIELDLNRADEVAENHFVSNTPHRVEVPL 1243
Query: 192 SNSNPGNAIPSGTTNRGN 209
+S P AI S G+
Sbjct: 1244 LSSRPLPAIFSSADTNGS 1261
>09_06_0176 + 21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 28.3 bits (60), Expect = 6.5
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 132 DMSNNSTENGASEIGNTNRALDNSNTDTTSV-GVIYNTPNGDRTLKIEEIARKNGDT--D 188
D S++ N + N N ALDN++ D ++ + + P+ D I+EI D D
Sbjct: 1019 DASDSDAANIDEILPNVNDALDNNSADNDAICPNVPDAPDSD-AANIDEILPNVDDALDD 1077
Query: 189 KAISNSNPGNAIPSGT-TNRGNVTSNVETTILDLRRKDNTNNTEPPPLMTDPQVFRERV- 246
+ N +P + +N N+ + + ++D N +NT+ D R+
Sbjct: 1078 NSADNDAICPNVPDASDSNAANIDA-IHPNVVD-ASSSNASNTDAVCHGIDDAQGRDAAV 1135
Query: 247 ------APFREADDLD 256
AP ADD+D
Sbjct: 1136 CPNVDDAPENNADDMD 1151
>08_02_1204 -
25267546-25268219,25268319-25268452,25269567-25269661,
25270289-25270304,25270635-25270684,25270960-25271331
Length = 446
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 2 FYLYH--FSFYAYHYRFNGQYSSLALVTSWLFIQHSMLYFFHHYELPVI 48
+Y H F Y + + LA+ T W IQ L F + Y P++
Sbjct: 119 YYCRHKVFKVYEHGHHIRCTVKCLAMATDWKNIQLQFLRFSYSYVFPIL 167
>10_08_0521 +
18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 173 RTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVETT 217
RTL + +G + ++P N+ PS +TN+GN TT
Sbjct: 844 RTLASHAVGASSGSGNSRNMVTSPTNSSPSPSTNQGNQGGVASTT 888
>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
19387454-19388884,19388953-19389118,19392035-19392114,
19392393-19392462,19392550-19392761,19392837-19392890,
19393471-19393623,19393715-19393930,19394029-19394248,
19394332-19394399,19394510-19394643,19394755-19394854,
19394943-19395421,19395506-19395699,19396270-19396355,
19396364-19396444,19396842-19397023,19397305-19397346,
19398247-19398558,19399374-19399434,19399435-19399617,
19399744-19399863,19400380-19401051,19402597-19402668,
19402742-19402865,19403563-19403651,19405023-19405097
Length = 2170
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 201 PSGTTNRGNVT--SNVETTILDLRRKDNTNNTEPPPLMTDPQVFRER 245
PSG +RG T +++ T D R+ N + PP + D V RER
Sbjct: 1543 PSGQFSRGLNTPSASIGHTRRDTFRQRKPNTSRPPSMHVDDYVARER 1589
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,956,675
Number of Sequences: 37544
Number of extensions: 221741
Number of successful extensions: 577
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 12
length of query: 256
length of database: 14,793,348
effective HSP length: 80
effective length of query: 176
effective length of database: 11,789,828
effective search space: 2075009728
effective search space used: 2075009728
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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