Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001933-TA|BGIBMGA001933-PA|undefined
(256 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical ... 30 1.4
Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical p... 29 2.5
AY081955-1|AAL92523.1| 788|Caenorhabditis elegans MAT-1 protein. 29 2.5
AC006708-13|AAF60415.1| 788|Caenorhabditis elegans Metaphase-to... 29 2.5
Z78413-9|CAB01662.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.3
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 3.3
U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical pr... 29 3.3
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 4.3
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 29 4.3
AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in ... 29 4.3
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 29 4.3
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 29 4.3
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 4.3
Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z54271-1|CAA91032.1| 550|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p... 28 7.5
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p... 28 7.5
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 28 7.5
Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC006673-2|AAF39928.1| 300|Caenorhabditis elegans Serpentine re... 27 9.9
>AL032627-8|CAB63354.2| 373|Caenorhabditis elegans Hypothetical
protein Y41C4A.5 protein.
Length = 373
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/78 (24%), Positives = 30/78 (38%)
Query: 136 NSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISNSN 195
N + G E+ TN S + + N +G+ NG+++ NS
Sbjct: 182 NGGQLGGGELVVTNPGSVGSGSGNSGNSSNNNNSSGNSNYGSNNSGSGNGNSNSGNGNSG 241
Query: 196 PGNAIPSGTTNRGNVTSN 213
GN +G + GN SN
Sbjct: 242 NGNGNNAGNSGNGNGNSN 259
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 131 GDMSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKA 190
G+ SNN+ +G S G+ N N N+++ + N+ NG+ NG+++
Sbjct: 207 GNSSNNNNSSGNSNYGSNNSGSGNGNSNSGN----GNSGNGNGN-NAGNSGNGNGNSNG- 260
Query: 191 ISNSNPGNAIPSGTTNRGNVTSN 213
+N N N +G GN +N
Sbjct: 261 -NNGNGSNGNGNGNNGNGNNGNN 282
>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical
protein T03D8.5 protein.
Length = 1012
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 141 GASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISNS 194
G +G T + + N N+ T + V+YN + D+ + + +I D+ +++S
Sbjct: 325 GMEFLGFTGKVIINQNSTRTPLFVVYNLDSTDKEMIVMQITEDLDDSKDPVASS 378
>Z79603-10|CAI79233.1| 224|Caenorhabditis elegans Hypothetical
protein M163.11 protein.
Length = 224
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/87 (19%), Positives = 41/87 (47%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
S++ST + +S + D+S++ ++S ++ + T + + + D+ SN
Sbjct: 47 SSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDTTTADSSSTTSSDSSTTSSN 106
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILD 220
S+ + T+ + +S+ TT +D
Sbjct: 107 SSSSTSSSDSTSVVSSTSSSTTTTCVD 133
>AY081955-1|AAL92523.1| 788|Caenorhabditis elegans MAT-1 protein.
Length = 788
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
SN T +G + + + + +N TS+ + ++T K R+N N
Sbjct: 335 SNTRTRSGIASVTRGSSSSQRTNPVRTSIRIADAAAAANKTAKTLSQRRRNEKQPLVSRN 394
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILDLRRKDNTNNTEPP 233
SN ++ SG+TN +V +T + +D + PP
Sbjct: 395 SNLARSL-SGSTN------SVASTASERPSEDEVSQINPP 427
>AC006708-13|AAF60415.1| 788|Caenorhabditis elegans
Metaphase-to-anaphase transitiondefect protein 1,
isoform a protein.
Length = 788
Score = 29.5 bits (63), Expect = 2.5
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
SN T +G + + + + +N TS+ + ++T K R+N N
Sbjct: 335 SNTRTRSGIASVTRGSSSSQRTNPVRTSIRIADAAAAANKTAKTLSQRRRNEKQPLVSRN 394
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILDLRRKDNTNNTEPP 233
SN ++ SG+TN +V +T + +D + PP
Sbjct: 395 SNLARSL-SGSTN------SVASTASERPSEDEVSQINPP 427
>Z78413-9|CAB01662.1| 305|Caenorhabditis elegans Hypothetical
protein T01C3.9 protein.
Length = 305
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 164 VIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNA--IPSGTTNRGNVTSNVETTILDL 221
+ Y P ++ +IEEI R AIS++ G+A +PS TT G+ S + T +
Sbjct: 176 ITYCAPIEEQQQRIEEIRRTRASVPVAISDAANGSAEMVPSNTT--GSSGSPMSTAPVPA 233
Query: 222 RRKD 225
+K+
Sbjct: 234 AKKE 237
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 139 ENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNG 185
EN +I +L N++ TTS I NTP+G + ++ +ARK+G
Sbjct: 765 ENLTRKITGEVESLKNNSPLTTS-NYIQNTPSGWGSRRMNNVARKDG 810
>U43375-5|AAA83622.1| 1035|Caenorhabditis elegans Hypothetical
protein K09C4.10 protein.
Length = 1035
Score = 29.1 bits (62), Expect = 3.3
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 140 NGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNA 199
NG+S I +T A DN T + P TL +I K TD+ + S+ +
Sbjct: 428 NGSSRIDDTVEATDNVPTLVNTTPTEQTKP----TLSYAKIVEKFSKTDQQPAKSDNSSP 483
Query: 200 IPSGTTNRGNVTSNVETTILDLRRKDNTNNTEPP 233
P N+ ++ T +N+ N+ P
Sbjct: 484 SPRAQRLEQNLATSANTIPCLSGNSENSENSYAP 517
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 133 MSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAIS 192
M+NN NG ++ + NR N N +++ G N G R+ + E R D+ + +
Sbjct: 994 MNNNRGFNGNNQQQHQNRRSFN-NQSSSNPG---NGSTGPRSSRSNENVR---DSSRQQN 1046
Query: 193 NSNPGNAIPSGTTNRGNVTS-NVETTILDLRRKDNTNNTEPPPLMTDPQ 240
+ + + N + T V+ + RKD+ N T+ P++ P+
Sbjct: 1047 SQKGSSGVSVSKENVASTTGVPVDKKQQNSNRKDDGNRTKRSPMVQSPE 1095
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
S S+ +G S + + + + +T +T G +T +G + + +G + +S
Sbjct: 1063 STGSSTSGESTVSGSTVSTVSGSTGSTITGE--STVSGSTESTVTAESTVSGSSVSTVSG 1120
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILD 220
N G+ I +T G+ S E+TIL+
Sbjct: 1121 -NTGSTITGESTVSGSTGSTGESTILE 1146
>AF024497-5|AAO21477.1| 871|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform b protein.
Length = 871
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 133 MSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAIS 192
M+NN NG ++ + NR N N +++ G N G R+ + E R D+ + +
Sbjct: 752 MNNNRGFNGNNQQQHQNRRSFN-NQSSSNPG---NGSTGPRSSRSNENVR---DSSRQQN 804
Query: 193 NSNPGNAIPSGTTNRGNVTS-NVETTILDLRRKDNTNNTEPPPLMTDPQ 240
+ + + N + T V+ + RKD+ N T+ P++ P+
Sbjct: 805 SQKGSSGVSVSKENVASTTGVPVDKKQQNSNRKDDGNRTKRSPMVQSPE 853
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 133 MSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAIS 192
M+NN NG ++ + NR N N +++ G N G R+ + E R D+ + +
Sbjct: 688 MNNNRGFNGNNQQQHQNRRSFN-NQSSSNPG---NGSTGPRSSRSNENVR---DSSRQQN 740
Query: 193 NSNPGNAIPSGTTNRGNVTS-NVETTILDLRRKDNTNNTEPPPLMTDPQ 240
+ + + N + T V+ + RKD+ N T+ P++ P+
Sbjct: 741 SQKGSSGVSVSKENVASTTGVPVDKKQQNSNRKDDGNRTKRSPMVQSPE 789
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform c protein.
Length = 1036
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 133 MSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAIS 192
M+NN NG ++ + NR N N +++ G N G R+ + E R D+ + +
Sbjct: 917 MNNNRGFNGNNQQQHQNRRSFN-NQSSSNPG---NGSTGPRSSRSNENVR---DSSRQQN 969
Query: 193 NSNPGNAIPSGTTNRGNVTS-NVETTILDLRRKDNTNNTEPPPLMTDPQ 240
+ + + N + T V+ + RKD+ N T+ P++ P+
Sbjct: 970 SQKGSSGVSVSKENVASTTGVPVDKKQQNSNRKDDGNRTKRSPMVQSPE 1018
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in germ
line developmentprotein 2, isoform a protein.
Length = 1113
Score = 28.7 bits (61), Expect = 4.3
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 133 MSNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAIS 192
M+NN NG ++ + NR N N +++ G N G R+ + E R D+ + +
Sbjct: 994 MNNNRGFNGNNQQQHQNRRSFN-NQSSSNPG---NGSTGPRSSRSNENVR---DSSRQQN 1046
Query: 193 NSNPGNAIPSGTTNRGNVTS-NVETTILDLRRKDNTNNTEPPPLMTDPQ 240
+ + + N + T V+ + RKD+ N T+ P++ P+
Sbjct: 1047 SQKGSSGVSVSKENVASTTGVPVDKKQQNSNRKDDGNRTKRSPMVQSPE 1095
>Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical
protein F48F7.5 protein.
Length = 293
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 149 NRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRG 208
NR L D+T+V V Y+ PN R ++ EE + D D S G+ + +
Sbjct: 188 NRYLRKRELDSTTVDVGYSLPNKRRRVE-EEDEDEEADDDNGESTDLEGSDVDENREEKE 246
Query: 209 NVTSNVETTILDLRRKD--NTNNTEPPPLMTDPQV 241
+ + ++ + +D T+ E P + +
Sbjct: 247 LIDESNDSDDTEFEEEDEYETDYVEDEPTFDEETI 281
>Z54271-1|CAA91032.1| 550|Caenorhabditis elegans Hypothetical
protein F21D5.1 protein.
Length = 550
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 165 IYNTPNGDRTLKIEEIARKNGDTDKAISNSNPGNAIPSGTTNRGNVTSNVET 216
I+ T N ++TL +K DTD A N++ PSGT N V + +T
Sbjct: 477 IFKTTNAEQTLVKPVGIQKMIDTDVAKYNNSRAFIRPSGTENIVRVYAEADT 528
>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
S +STE+ S+ ++ LD S++ + S +TP+ + + + T+++ S+
Sbjct: 422 SVSSTESVTSDSSDSTTPLDVSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSS 481
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILDLRRKDNTNNTEPPPLMTDP 239
++ ++ PSG+++ + N T D ++ TEP T+P
Sbjct: 482 TDAVSSSPSGSSSE---SPNSSTGGSDSSSSESV-TTEPSGSSTEP 523
>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
S +STE+ S+ ++ LD S++ + S +TP+ + + + T+++ S+
Sbjct: 422 SVSSTESVTSDSSDSTTPLDVSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSS 481
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILDLRRKDNTNNTEPPPLMTDP 239
++ ++ PSG+++ + N T D ++ TEP T+P
Sbjct: 482 TDAVSSSPSGSSSE---SPNSSTGGSDSSSSESV-TTEPSGSSTEP 523
>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
protein F53B7.5b protein.
Length = 2892
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
S +STE+ S+ ++ LD S++ + S +TP+ + + + T+++ S+
Sbjct: 422 SVSSTESVTSDSSDSTTPLDVSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSS 481
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILDLRRKDNTNNTEPPPLMTDP 239
++ ++ PSG+++ + N T D ++ TEP T+P
Sbjct: 482 TDAVSSSPSGSSSE---SPNSSTGGSDSSSSESV-TTEPSGSSTEP 523
>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
protein F53B7.5a protein.
Length = 3095
Score = 27.9 bits (59), Expect = 7.5
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
S +STE+ S+ ++ LD S++ + S +TP+ + + + T+++ S+
Sbjct: 422 SVSSTESVTSDSSDSTTPLDVSSSPSESTESQSSTPSDASSSESASSSSPAATTEESGSS 481
Query: 194 SNPGNAIPSGTTNRGNVTSNVETTILDLRRKDNTNNTEPPPLMTDP 239
++ ++ PSG+++ + N T D ++ TEP T+P
Sbjct: 482 TDAVSSSPSGSSSE---SPNSSTGGSDSSSSESV-TTEPSGSSTEP 523
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 136 NSTENGASEI----GNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAI 191
+ST +G SE G T + DT++V N+ + K E G T
Sbjct: 234 DSTSSGNSETTESDGTTTTVFTTTKDDTSTVSGDSNSGSSTSEFKNTETTTGPGSTVSEP 293
Query: 192 SNSNPGNAIPSGTTNRGNVTSNVETTILDLR---RKDNTNNTEP 232
S+S + S ++R + S TT + L+ D++NN +P
Sbjct: 294 SSSERSDLDSSSVSDR-STDSQDRTTEIGLQGPILSDDSNNPDP 336
>Z99278-4|CAB16492.1| 871|Caenorhabditis elegans Hypothetical
protein Y53C12B.3b protein.
Length = 871
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
+NN+ +NG S N+N+ +N + +T+ V +T N + E + G+T + +
Sbjct: 22 NNNNKKNGGSA-ANSNQNNNNPHHTSTTDSVPNSTANVSSAISF-EYSEPPGNTTRTTPD 79
Query: 194 SNPGNAIPSGT 204
S G GT
Sbjct: 80 SGLGTDDQKGT 90
>Z99278-3|CAB16493.1| 867|Caenorhabditis elegans Hypothetical
protein Y53C12B.3a protein.
Length = 867
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 134 SNNSTENGASEIGNTNRALDNSNTDTTSVGVIYNTPNGDRTLKIEEIARKNGDTDKAISN 193
+NN+ +NG S N+N+ +N + +T+ V +T N + E + G+T + +
Sbjct: 22 NNNNKKNGGSA-ANSNQNNNNPHHTSTTDSVPNSTANVSSAISF-EYSEPPGNTTRTTPD 79
Query: 194 SNPGNAIPSGT 204
S G GT
Sbjct: 80 SGLGTDDQKGT 90
>AC006673-2|AAF39928.1| 300|Caenorhabditis elegans Serpentine
receptor, class x protein62 protein.
Length = 300
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 10 YAYHYRFNGQYSSLALVTSWLFIQHSMLYFF 40
Y YH FN + S + ++ WLF +Y +
Sbjct: 113 YQYHNIFNEKNSKILIILIWLFTGSVAIYLY 143
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.132 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,350,351
Number of Sequences: 27539
Number of extensions: 218339
Number of successful extensions: 764
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 26
length of query: 256
length of database: 12,573,161
effective HSP length: 80
effective length of query: 176
effective length of database: 10,370,041
effective search space: 1825127216
effective search space used: 1825127216
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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