Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001932-TA|BGIBMGA001932-PA|undefined
         (74 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...    25   1.6  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    24   2.8  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    22   8.6  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 52  NQKATEYEAIWLVVREGNKEERY 74
           N+KA  ++AIW V+     E RY
Sbjct: 193 NRKAEYFKAIWNVINWKEAESRY 215


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/43 (18%), Positives = 20/43 (46%)

Query: 22  DQYDAICCHTAIAKRHWLSFARGPISRYILNQKATEYEAIWLV 64
           + +  +CCH     +  L         + L+ K++EY+  +++
Sbjct: 144 ESFRCLCCHVPCKNKKLLREHMNNKRHFRLDPKSSEYDEFYII 186


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 25  DAICCHTAIAKRHWL 39
           DA+ CH  IA+ H L
Sbjct: 213 DAVACHERIARYHIL 227


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 356,713
Number of Sequences: 5004
Number of extensions: 10775
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 3
length of query: 74
length of database: 2,362,478
effective HSP length: 54
effective length of query: 20
effective length of database: 2,092,262
effective search space: 41845240
effective search space used: 41845240
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)