GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001932-TA|BGIBMGA001932-PA|undefined
         (74 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569...    31   0.15 
03_02_0849 - 11768191-11771412                                         26   3.2  
11_08_0022 + 27733247-27733935,27735722-27735981,27736213-277364...    25   7.4  
02_02_0091 - 6679712-6679999,6681192-6681303,6683389-6683399           25   9.8  

>03_05_0564 -
           25655095-25655106,25656089-25656541,25656886-25656962,
           25657058-25657149,25657447-25657553,25657662-25657747,
           25657861-25657977,25658205-25658288,25658400-25658479,
           25658958-25659132,25659455-25659521,25660175-25660236,
           25660369-25660450,25660890-25661312,25661514-25661610,
           25662055-25662095,25662673-25662837
          Length = 739

 Score = 30.7 bits (66), Expect = 0.15
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 3   EFFNDTTTAFYIILIVWIADQYDAICCHTAIAKRHWLSF 41
           EF++D   AF ++ +VW+ + +  I   T+I+ + +  F
Sbjct: 504 EFYDDQLLAFLVLTLVWLCELFTMISVRTSISMQFFPRF 542


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 35  KRHWLSFARGPISRYILNQKATEYEAIWLVVREGNKEERY 74
           KR WL+   GP  R+ L+ K TE       +  G K  ++
Sbjct: 107 KRSWLNLQLGPRQRWGLDAKITEINERLDEIARGRKRFKF 146


>11_08_0022 +
           27733247-27733935,27735722-27735981,27736213-27736404,
           27737695-27738686
          Length = 710

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 28  CCHTAIAKRHWLSFARGPISR 48
           C +  +A++ W  F+RG  SR
Sbjct: 220 CSYAFVAEKAWYKFSRGDFSR 240


>02_02_0091 - 6679712-6679999,6681192-6681303,6683389-6683399
          Length = 136

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 33 IAKRHWLSFARGPISRYILNQKATEYEAIWLVVREGNKE 71
          I +  WL F     S Y+L   A+    +  + REG++E
Sbjct: 29 ITRFDWLIFLLDQASAYLLLTSASAAAEVVYLAREGDRE 67


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,847
Number of Sequences: 37544
Number of extensions: 62958
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 14,793,348
effective HSP length: 54
effective length of query: 20
effective length of database: 12,765,972
effective search space: 255319440
effective search space used: 255319440
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)