GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001932-TA|BGIBMGA001932-PA|undefined
         (74 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)                 79   4e-16
SB_51022| Best HMM Match : Cornifin (HMM E-Value=0.028)                27   2.9  
SB_19949| Best HMM Match : DiS_P_DiS (HMM E-Value=7.9)                 26   3.8  

>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
          Length = 1130

 Score = 79.4 bits (187), Expect = 4e-16
 Identities = 33/41 (80%), Positives = 36/41 (87%)

Query: 1   MSEFFNDTTTAFYIILIVWIADQYDAICCHTAIAKRHWLSF 41
           MSEFFNDTTT+FYIILIVW ADQYDAICCHT  +K+ WL F
Sbjct: 467 MSEFFNDTTTSFYIILIVWTADQYDAICCHTQQSKKFWLRF 507


>SB_51022| Best HMM Match : Cornifin (HMM E-Value=0.028)
          Length = 312

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 25  DAICCHTAI-AKRHWLSFARGPI 46
           +AIC +  I A ++WLSF+R PI
Sbjct: 235 NAICYYLLIFAFKYWLSFSRAPI 257


>SB_19949| Best HMM Match : DiS_P_DiS (HMM E-Value=7.9)
          Length = 353

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 29 CHTAIAKRHWLSFARGPISRYIL 51
          CH  ++  + + F+ GP+SRY+L
Sbjct: 45 CHKTLSVLYPVMFSCGPLSRYVL 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,253
Number of Sequences: 59808
Number of extensions: 73790
Number of successful extensions: 177
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 8
length of query: 74
length of database: 16,821,457
effective HSP length: 52
effective length of query: 22
effective length of database: 13,711,441
effective search space: 301651702
effective search space used: 301651702
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 52 (25.0 bits)