GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001932-TA|BGIBMGA001932-PA|undefined
         (74 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ005958-1|AAY27747.1|  620|Homo sapiens membralin protein protein.    88   4e-18
AK090400-1|BAC03381.1|  357|Homo sapiens FLJ00277 protein protein.     88   4e-18
AC004528-3|AAC12681.1|  529|Homo sapiens R32184_3 protein.             88   4e-18
BC008957-1|AAH08957.1|  408|Homo sapiens chromosome 19 open read...    86   1e-17

>DQ005958-1|AAY27747.1|  620|Homo sapiens membralin protein protein.
          Length = 620

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 36/41 (87%), Positives = 39/41 (95%)

Query: 1   MSEFFNDTTTAFYIILIVWIADQYDAICCHTAIAKRHWLSF 41
           MSEFFNDTTTAFYIILIVW+ADQYDAICCHT+ +KRHWL F
Sbjct: 367 MSEFFNDTTTAFYIILIVWLADQYDAICCHTSTSKRHWLRF 407


>AK090400-1|BAC03381.1|  357|Homo sapiens FLJ00277 protein protein.
          Length = 357

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 36/41 (87%), Positives = 39/41 (95%)

Query: 1   MSEFFNDTTTAFYIILIVWIADQYDAICCHTAIAKRHWLSF 41
           MSEFFNDTTTAFYIILIVW+ADQYDAICCHT+ +KRHWL F
Sbjct: 104 MSEFFNDTTTAFYIILIVWLADQYDAICCHTSTSKRHWLRF 144


>AC004528-3|AAC12681.1|  529|Homo sapiens R32184_3 protein.
          Length = 529

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 36/41 (87%), Positives = 39/41 (95%)

Query: 1   MSEFFNDTTTAFYIILIVWIADQYDAICCHTAIAKRHWLSF 41
           MSEFFNDTTTAFYIILIVW+ADQYDAICCHT+ +KRHWL F
Sbjct: 367 MSEFFNDTTTAFYIILIVWLADQYDAICCHTSTSKRHWLRF 407


>BC008957-1|AAH08957.1|  408|Homo sapiens chromosome 19 open reading
           frame 6 protein.
          Length = 408

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 35/39 (89%), Positives = 38/39 (97%)

Query: 1   MSEFFNDTTTAFYIILIVWIADQYDAICCHTAIAKRHWL 39
           MSEFFNDTTTAFYIILIVW+ADQYDAICCHT+ +KRHWL
Sbjct: 367 MSEFFNDTTTAFYIILIVWLADQYDAICCHTSTSKRHWL 405


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.327    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,256,896
Number of Sequences: 224733
Number of extensions: 298353
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 73,234,838
effective HSP length: 53
effective length of query: 21
effective length of database: 61,323,989
effective search space: 1287803769
effective search space used: 1287803769
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)