GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001932-TA|BGIBMGA001932-PA|undefined
         (74 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    27   2.1  
AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical...    25   6.4  
Z99281-25|CAE18026.1|  302|Caenorhabditis elegans Hypothetical p...    25   8.5  

>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 21  ADQYDAICCHTAIAKRHWLSFARGPISRYILNQKAT 56
           A+ +  +C HT+++ R W + A   ++++ +  K +
Sbjct: 791 ANHFIKVCNHTSVSMRDWAAVALTSLAKHAVKSKTS 826


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/36 (22%), Positives = 21/36 (58%)

Query: 21  ADQYDAICCHTAIAKRHWLSFARGPISRYILNQKAT 56
           A+ +  +C HT+++ R W + A   ++++ +  K +
Sbjct: 791 ANHFIKVCNHTSVSMRDWAAVALTSLAKHAVKSKTS 826


>AC024817-38|AAF59578.1|  608|Caenorhabditis elegans Hypothetical
           protein Y54G2A.20 protein.
          Length = 608

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 19  WIADQYDAICCHTAIAKRHWLSFARGPISR 48
           W A   + I CHT++    W S  +  I +
Sbjct: 341 WSASSRENIACHTSMFAESWHSVLKAQIGK 370


>Z99281-25|CAE18026.1|  302|Caenorhabditis elegans Hypothetical
           protein Y57G11C.43 protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 24  YDAICCHTAIAKRHWLSFARGPISRY---ILNQKATEYE 59
           Y  + C   +A  HWL+  +  + RY   I++Q    YE
Sbjct: 101 YCVVECSPPVATCHWLNEQKPEVERYPKEIIDQLMMRYE 139


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,896,354
Number of Sequences: 27539
Number of extensions: 57742
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 12,573,161
effective HSP length: 54
effective length of query: 20
effective length of database: 11,086,055
effective search space: 221721100
effective search space used: 221721100
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)