GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001932-TA|BGIBMGA001932-PA|undefined
         (74 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   6.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   6.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    19   6.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    19   8.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 9   TTAFYIILIVW 19
           T  +YII++ W
Sbjct: 111 TNIYYIIILAW 121


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 9   TTAFYIILIVW 19
           T  +YII++ W
Sbjct: 164 TNIYYIIILAW 174


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 5   FNDTTTAFYIILIV 18
           F+D TT FY   +V
Sbjct: 463 FDDGTTRFYTACVV 476


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 37  HWLSFARGPISRYILNQKATEY 58
           HW+    G + R +LN++   +
Sbjct: 175 HWIWTPHGWMRRNVLNKQHVHF 196


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,247
Number of Sequences: 429
Number of extensions: 676
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 140,377
effective HSP length: 46
effective length of query: 28
effective length of database: 120,643
effective search space:  3378004
effective search space used:  3378004
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.8 bits)
S2: 36 (18.6 bits)