GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001932-TA|BGIBMGA001932-PA|undefined
         (74 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038...    31   0.093
At5g03435.1 68418.m00297 C2 domain-containing protein contains P...    25   6.1  
At4g04545.1 68417.m00665 Ulp1 protease family protein contains P...    25   6.1  

>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
           Nuf2 family domain; similar to Myosin-like protein NUF2
           (Nuclear filament-containing protein 2) (Nuclear
           division protein nuf2) (Swiss-Prot:Q10173)
           [Schizosaccharomyces pombe]
          Length = 974

 Score = 31.1 bits (67), Expect = 0.093
 Identities = 11/39 (28%), Positives = 23/39 (58%)

Query: 3   EFFNDTTTAFYIILIVWIADQYDAICCHTAIAKRHWLSF 41
           EF++D   AF ++++VW+ + +  I   T I+ + +  F
Sbjct: 737 EFYDDQLLAFMVLVLVWLCELFTLISVRTPISMKFFPRF 775


>At5g03435.1 68418.m00297 C2 domain-containing protein contains Pfam
           profile PF00168: C2 domain
          Length = 745

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 7   DTTTAFYIILIVWIADQYDAI 27
           +T T FY+++ VW   Q D +
Sbjct: 143 NTKTGFYLMMSVWFGTQVDEV 163


>At4g04545.1 68417.m00665 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 882

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 4   FFNDTTTAFYIILIVWIADQYDAICCHTAIAKRHWL 39
           +F   T   +++   W  D+ D I C   + ++HW+
Sbjct: 724 YFPTLTRVPFMVQPKWF-DEVDVIYCRMQVERQHWV 758


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,972
Number of Sequences: 28952
Number of extensions: 51145
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 3
length of query: 74
length of database: 12,070,560
effective HSP length: 54
effective length of query: 20
effective length of database: 10,507,152
effective search space: 210143040
effective search space used: 210143040
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)