Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001931-TA|BGIBMGA001931-PA|undefined
         (412 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    25   1.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   9.2  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 234 IWEGILGLVEDIDKDSKLIDESLDESAANESSKDD 268
           +W GIL  +   D   K +D+ L ++   E+S DD
Sbjct: 161 LWVGILSTIFLCDTILKKVDDILSQAYKLEASFDD 195


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
          protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 9  ANNLPPGVNPENNFLPG 25
          +N+L  G NP++   PG
Sbjct: 3  SNSLTAGCNPDSELFPG 19


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.138    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,159
Number of Sequences: 317
Number of extensions: 3382
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 412
length of database: 114,650
effective HSP length: 58
effective length of query: 354
effective length of database: 96,264
effective search space: 34077456
effective search space used: 34077456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)