Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001931-TA|BGIBMGA001931-PA|undefined
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||... 34 0.042
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 30 0.69
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 29 0.91
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 1.2
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch... 29 1.2
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 29 1.6
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 3.7
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 4.8
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 4.8
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 6.4
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 6.4
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 26 8.5
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 26 8.5
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 26 8.5
>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 335
Score = 33.9 bits (74), Expect = 0.042
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 221 TIVSGEDVEPSSSIWEGILGLVEDIDKDSKLIDESLDESAANESSKDDDYILEYSLEYGF 280
TIVS D + I +GIL + +DKDS L+ +D ++ KD ++ L+ F
Sbjct: 84 TIVSSSDNDNKICISQGILSVT--LDKDSYLV-SGIDAKPSSSEPKDTLWVANIDLKSAF 140
Query: 281 LRLSPSARLRLK 292
LR RLK
Sbjct: 141 LRPQWKGFERLK 152
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 29.9 bits (64), Expect = 0.69
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 325 DLLMASIKTLAEQEDNKGYLRNVITGEHYRFVSMLTARSSYVAAFFIMLVFR---RPLVN 381
DL+ IK + + D G N++ H V+M T + ++ + + V RP V+
Sbjct: 109 DLVSLQIKLILQDADRLGIQFNIVDYTHILRVAMYTG-NKHILEYIVARVKEKRIRPSVD 167
Query: 382 HIAATRGPLVDNEWT 396
+ A G + N W+
Sbjct: 168 YFNAILGVIGGNRWS 182
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 29.5 bits (63), Expect = 0.91
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 291 LKIPVKIVTLDPQRDQCFGDSFSRFVLDEFLGYDDLLMA--SIKTLAEQEDNKGYLRNVI 348
L P +V LD Q S +LD L Y + L A ++ +A Q+ + YL
Sbjct: 201 LSNPAVLVQLDHLVSQILAHLRSDNILDIVLHYPNSLGAIEDLRLVARQKQQRQYLTETF 260
Query: 349 TGEHYRFVSMLTARSSYVAAFFIMLV 374
+ + ++ SSY+ F++ +
Sbjct: 261 VKDCTSSILTASSDSSYILLFYVSTI 286
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 192 EDEDTSQGIVETSYVDKTEDVNEELDLNTTIVSGEDVEPSSSIWEGILGLVEDIDKDSKL 251
+D+ GI+ T + ++ DVN+E++ NT + E VE S +I +G +++ L
Sbjct: 758 DDKSLIGGILSTVEMTQSTDVNDEIE-NTLTIPVE-VEHSDNIDKG--------SEENDL 807
Query: 252 IDESLDESAANESSKDDDYILEYS 275
E++DE+ N++ + ++E S
Sbjct: 808 GKEAVDEANNNQNDVLESVVVEQS 831
>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 505
Score = 29.1 bits (62), Expect = 1.2
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 186 NITRIHEDEDTSQ---GIVETSYVDKTEDVNEELDLNTTIVSGEDVEPSSSIWEGILGLV 242
N + ++E+ TSQ GIVE+ T D ++ + + ++ D E S+ +G
Sbjct: 19 NSSSLNEEIQTSQDPLGIVESYQESSTSDFDKSHYTHNSSIAAADSEYGSAFIQGQSSNG 78
Query: 243 EDIDKDSKLIDESLD 257
+I + ID+ LD
Sbjct: 79 SEIKSERPSIDKKLD 93
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 68 PRPVRRFFEFLVLLKAILAFFV--LAYIHIAFSRTPTTCLNHVKD 110
P +RR F+ LK + + + +H+ + TPT+ L HVKD
Sbjct: 319 PGNIRRAEHFIAFLKRFVEYLKTRMKVLHV-IAETPTSFLQHVKD 362
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 192 EDEDTSQGIVETSYVDKTEDVNEELDLNTT-IVSGEDVEPSSSIWEGILGLVEDIDKDSK 250
E D + + E + D T+ V D++ + +VS E E S+ + +
Sbjct: 39 ESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGD-----ASTQSPETSEN 93
Query: 251 LIDESLDESAANESSKDDDYILE 273
++ S+DES A + K+D ++E
Sbjct: 94 VVKNSVDESVAEKPEKEDLAVIE 116
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 3.7
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 192 EDEDTSQGIVETSYVDKTEDVNE-ELDLNTTIVSGEDVEPSSSIWEGILGLVEDIDKDSK 250
E+E S E+S + + +E E+ + + ED E S E + ++DS+
Sbjct: 44 EEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEE--EEETESEEDSE 101
Query: 251 LIDESLDESAANESSKDDDYILEYSLEYGFLRLSPSARLR 290
+ DES ES + S+++ E S E R PS+ L+
Sbjct: 102 VSDESESESESESESEEESESEEESDESE--RSGPSSFLK 139
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 27.1 bits (57), Expect = 4.8
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 316 VLDEFLGYDDLLMASIKTLAEQED 339
+L E LGYD++ A I++LA QE+
Sbjct: 506 ILKERLGYDNISDAEIQSLAVQEE 529
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 27.1 bits (57), Expect = 4.8
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 195 DTSQGIVETSYVDKTEDVNEELDLNTTIVSGEDVEPSSSIWEGILGLVEDIDKDSKLIDE 254
+ S+G + +YV + V+E D N + +EP+ L+ DID D+++I+E
Sbjct: 37 EESKGSITENYVQDSS-VDEHDDGNWQPMEVISLEPTH--------LINDIDDDNEIIEE 87
Query: 255 SLDESAANESSKDDDY 270
+ ES + Y
Sbjct: 88 KKETEKVEESELEPRY 103
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 210 EDVNEELDLNTTIVSGEDVEPSSSIWEGILGLVEDIDKDSKLIDESLDESAANESSKDDD 269
E+ ++E D N E E + ++E D D D DES AN+S +
Sbjct: 611 ENEHDEYDPNLIYYDNEPTEENRLVFEDTNNTFIDTDSDDSNADESQFLEYANDSPNSSE 670
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 6.4
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 203 TSYVDKTEDVNEELDLNTTI-VSGEDVE--PSSS---IWEGILGLVE-----DIDKDSKL 251
TS V + D N +L+++TT V + E PSS+ ++ G E ++ +S
Sbjct: 987 TSAVTELPDPNHQLEMSTTTHVQHPNSETIPSSTENQYFDTTSGAFEANSNTEVTVNSNE 1046
Query: 252 IDESLDESAANESSKDDD 269
+ + D ANES DDD
Sbjct: 1047 VSQPFDFDTANESDNDDD 1064
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 96 AFSRTPTT--CLNHVKDSWPRDGILRV---EILRNPSEDYSIEQS 135
A ++TP +NHV D WP + ++R+ ++L S+++S+ S
Sbjct: 179 AITKTPEKKQWINHVSDFWPLEKLVRMTEDDLLAIVSDNFSLPLS 223
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.2 bits (55), Expect = 8.5
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 190 IHEDEDTSQGIVETSYVDKTEDVNEELDLNTTIVSGEDVEPSSSIWEGILGLVEDIDKDS 249
++EDE+ +V + V TED+ + + TI+ VEP I +V K+S
Sbjct: 121 LNEDEEKETSLVGS--VSVTEDLGDSSAIGRTILVNNSVEPQMENTANIT-IVSPSLKES 177
Query: 250 KLIDESLDESAANESS 265
D +E A N+++
Sbjct: 178 ---DFESEEKATNDNN 190
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 331 IKTLAEQEDNKGYLRNVIT---GEHYRFV 356
+K LAE+ DN G L +V+ GEH+R V
Sbjct: 243 LKQLAEKFDNPGPLYDVVVFHDGEHWRVV 271
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,766,385
Number of Sequences: 5004
Number of extensions: 70871
Number of successful extensions: 205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 17
length of query: 412
length of database: 2,362,478
effective HSP length: 74
effective length of query: 338
effective length of database: 1,992,182
effective search space: 673357516
effective search space used: 673357516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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