GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001930-TA|BGIBMGA001930-PA|undefined
         (238 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       27   0.17 
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    25   0.68 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.1  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    22   3.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.6  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   8.4  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 3/132 (2%)

Query: 19  PCTEARNRCMYRTGCGAALSNYMMMC-ERVLTTDLPPTACPNECSNALIALTSTEEGKEL 77
           PC +    C+   G G+  ++   +C E     +LP      +C          E   + 
Sbjct: 14  PCDDEVESCI-AVGVGSGRNSAPSICGEHGHCVNLPGVGHRCQCQPGFTGKYCHENINDC 72

Query: 78  MSCECEDD-YCIEAKDRIDVCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLC 136
               CE+   C++  +       +  +GA   I +   S   C  +  C   +  +   C
Sbjct: 73  KVNPCENGGTCVDKINAFQCICKEGWEGALCNINTDDCSPNPCRNNGSCVDRIADFECNC 132

Query: 137 RSMFRGRKCSKK 148
           ++ ++G+ CS K
Sbjct: 133 KNGWKGKTCSLK 144


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 24.6 bits (51), Expect = 0.68
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 168 CQCDGTE-DYDCPTMQENLARLCFHKHKNHTRSHDRHGEKHK 208
           C  +G E   D P   +N    C  KHK   R   RH  K+K
Sbjct: 52  CTPEGEELKKDIPDALQNECAKCNEKHKEGVRKVIRHLIKNK 93


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 110  PSCSLSQLICLADAQCSTALQYYHHLCRSMF 140
            P+ ++SQLI   D +C +   Y H  C S +
Sbjct: 1195 PTTTVSQLI---DDKCDSGQYYPHESCSSFY 1222


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 125 CSTALQYYHHLCRSMFRGRKCSKK 148
           C   +  YH  C+  F GR C  K
Sbjct: 315 CVQLVNDYHCNCKLGFMGRHCESK 338


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 168 CQCDGTE-DYDCPTMQENLARLCFHKHKNHTRSHDRHGEKHK 208
           C  +G E   D P   +N    C  KHK   R    H  K+K
Sbjct: 53  CTPEGEELKRDIPEALQNECAKCNEKHKEGVRKVLHHLIKNK 94


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 125 CSTALQYYHHLCRSMFRGRKCSKKC 149
           C+   +Y    C+ ++  ++C K C
Sbjct: 777 CTCDAKYLEIKCKRIYNEKQCCKNC 801


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 59  NECSNALIALTSTEEGKE 76
           N C +AL  L S E GK+
Sbjct: 97  NTCRSALALLLSPEVGKD 114


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.131    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,840
Number of Sequences: 317
Number of extensions: 1820
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 238
length of database: 114,650
effective HSP length: 55
effective length of query: 183
effective length of database: 97,215
effective search space: 17790345
effective search space used: 17790345
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)