GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001930-TA|BGIBMGA001930-PA|undefined
         (238 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    28   1.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.2  
SPAC15E1.06 |vps29||retromer complex subunit Vps29|Schizosacchar...    27   3.2  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   4.2  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   7.4  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   9.7  

>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 34  GAALSNYMMMCERVLTTDLPPTACPNECSN----ALIALTSTEEGKELMSCECEDDYCIE 89
           G  + N+++ C + L  + PP +  NE +N     LI+LT      EL S   E   CI 
Sbjct: 588 GNNIQNHVLSCYKTLFFEPPPNSGTNEAANYIARNLISLTYDASLAELTS--LEQMLCIL 645

Query: 90  AKD 92
            KD
Sbjct: 646 MKD 648


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 191 HKHKNHTRSHDRHGEKHKK 209
           H H +H++SHDR  EK KK
Sbjct: 724 HGH-SHSKSHDREKEKEKK 741


>SPAC15E1.06 |vps29||retromer complex subunit
           Vps29|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 108 VIPSCSLSQLICLADAQCSTALQYYHHLCRSM 139
           +IP   +SQ+ICL +   ++  +Y  H+C  +
Sbjct: 26  LIPG-KISQIICLGNLTSTSVYEYLKHVCSDL 56


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 77  LMSCECEDDYCIEAKDRIDVCRSQVMKGASDVIPSCSLSQLICLADAQ-CSTALQYYHH 134
           + SC     +C   +  ID+C  + ++ A D  P  S      L+  Q C+T   +Y +
Sbjct: 893 VFSCPYYTHFCHPTRRYIDICVQRQLREAFDGRPDFSKDYRSLLSITQSCNTLSNFYRN 951


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 66  IALTSTEEGKELMSCECEDDY--CIEAKDRIDVCRSQVMKGASDVIPSCSLSQLICLADA 123
           +ALT  + G+ L+    E+ +     A +R+     ++++  SDV    S  QL+ LAD+
Sbjct: 274 LALTHADLGQSLIDYSVEEQHNGLANALNRV----GKMLQAISDVRIMQSSKQLVTLADS 329

Query: 124 QC 125
            C
Sbjct: 330 LC 331


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 169 QCDGTEDYDCPTMQENLARLCFHKHKNHTRSHDRHGEKH 207
           +C G        ++ N+   C +K  +  RSH RH E H
Sbjct: 81  KCSGERPSCDQCLKHNIP--CIYKSNSTKRSHSRHEEIH 117


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.131    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 916,107
Number of Sequences: 5004
Number of extensions: 32767
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 6
length of query: 238
length of database: 2,362,478
effective HSP length: 71
effective length of query: 167
effective length of database: 2,007,194
effective search space: 335201398
effective search space used: 335201398
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)