Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001930-TA|BGIBMGA001930-PA|undefined
(238 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970... 30 1.9
02_01_0224 - 1461924-1462227,1462602-1462798,1463059-1463213,146... 29 3.3
01_01_1069 - 8420454-8420670,8421272-8421447,8421556-8421738,842... 29 3.3
05_01_0272 + 2111918-2112175,2112666-2113637 29 4.4
01_06_0106 - 26516930-26517349,26517474-26517905,26517981-265180... 29 4.4
01_05_0288 - 20477147-20477635,20477995-20478067,20478807-20478892 28 5.8
01_04_0054 - 15456668-15459691 28 5.8
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 28 7.7
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873... 28 7.7
>01_01_1206 -
9702128-9702184,9702272-9702323,9702410-9702471,
9702578-9702665,9703027-9703095,9703224-9703281,
9703895-9703996,9704075-9704179,9704273-9704624,
9706005-9706100,9706427-9706501,9707192-9707370,
9707501-9707740,9707922-9708017,9708193-9708306,
9708428-9708527
Length = 614
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 141 RGRKCSKKCINSIEILRKQEKAAALTVCQCDGTEDYDCPTMQENLARLCFHKHKNHTRSH 200
R K K+ E EK A+ + D E+++ T+QE+ +++ H H H SH
Sbjct: 199 RKEKEEKRMKEEAEKQAADEKKASDASQEVDSQENHE--TVQEDESKVAEH-HDGHATSH 255
Query: 201 DRH 203
D H
Sbjct: 256 DNH 258
>02_01_0224 -
1461924-1462227,1462602-1462798,1463059-1463213,
1464101-1464207,1464289-1464375,1465332-1465414,
1465959-1466027,1466332-1466658,1466744-1466957,
1467170-1467267,1467516-1467554,1467672-1468160
Length = 722
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 61 CSNALIALTSTEEGKELMSCECEDDYCIEAKDRIDVCRSQVMKGASDVIP-SCSLSQLIC 119
CS + LT + L CE + ++ I ++K +SD IP L L+
Sbjct: 349 CSEEI--LTLVQSTGSLDKCEASSEASSSVRNAISQVYDIIIKTSSDTIPIQTLLEALLN 406
Query: 120 LA----DAQCSTALQYYHHLCRSMFRGRKCSKK 148
LA DA S AL+ H + + + R S +
Sbjct: 407 LAAVGNDAVVSRALRMLHSVLQHLLNNRTMSNQ 439
>01_01_1069 -
8420454-8420670,8421272-8421447,8421556-8421738,
8421885-8421980,8422064-8422192,8422266-8422445,
8422524-8422634,8422714-8422869,8422983-8423078,
8423160-8423327,8423402-8423642,8423724-8423851,
8424042-8424134,8424214-8424309,8424431-8424523,
8424741-8424850,8424999-8425134,8425215-8425315,
8426029-8426152,8426237-8426411,8426523-8426681,
8427423-8427536,8427669-8427848,8428926-8429005
Length = 1113
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 18 MPCTE-ARNRCMYRTGCGAALSNYMMMCERVLTTDLPP 54
+PC ++N + CG +S + MM +V+TT +PP
Sbjct: 818 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPP 855
>05_01_0272 + 2111918-2112175,2112666-2113637
Length = 409
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 79 SCECEDDYCIEAKDRIDVCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRS 138
S E + C E + + M + + + + +D + A++Y ++
Sbjct: 144 SSESSESECEEQMMTMSCVATVTMPQIGEGVAISTTVPQVAASDVATAPAMEYDKAAMKA 203
Query: 139 MFRGRKCSKKCIN-SIEILRKQEKAAALTVCQ 169
M + K KK ++++ +K++K A LT+C+
Sbjct: 204 MKKREKEEKKAAKMAMKMKKKEKKMATLTLCK 235
>01_06_0106 -
26516930-26517349,26517474-26517905,26517981-26518058,
26518352-26518499,26518662-26518765,26518838-26518912,
26519195-26519261,26519352-26519356
Length = 442
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 61 CSNALIALTSTEEGKELMSCECEDDYCIEAKDRIDVCR-SQVMKGASDVIPSCSLSQLIC 119
C + L+A E K + E ED YC+ AKD + + + +GA D S C
Sbjct: 248 CPDDLVAFQRMSE-KGIGKKEVEDKYCLIAKDVVKLKKCGNGWRGAED-----GRSNFAC 301
Query: 120 LADAQC 125
L D C
Sbjct: 302 LEDEYC 307
>01_05_0288 - 20477147-20477635,20477995-20478067,20478807-20478892
Length = 215
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 122 DAQCSTALQYYHHLCRSMFRGRKCSKKCI---NSIEILRKQEKAAALTVCQCDGTEDYDC 178
D A + HL + KKCI NS+ ++ KQEKA A TV + +
Sbjct: 137 DEAAQLAREREAHLAKEKENNDFSIKKCISILNSMVVVTKQEKANAYTVFKNAENREIFV 196
Query: 179 PTMQEN 184
T QE+
Sbjct: 197 STCQED 202
>01_04_0054 - 15456668-15459691
Length = 1007
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 86 YCIEAKDRIDVCR-SQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRK 144
+ E ++ D R S +G + S + C T QYY ++ R +
Sbjct: 194 HATEPMEKTDANRASNAKEGYGSSVRPPSAGEAFWTMCVNCKTKYQYYSNVLNHKLRCQN 253
Query: 145 CSKK----CINSIEILRKQEKAAALTVCQ-CDGTEDYDCPT 180
C K +N ++ +AA + Q CD + DC T
Sbjct: 254 CKKDFRAVMLNEQDVPSVFSSSAAKSAGQHCDVPKQEDCST 294
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 119 CLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEILRKQEK 161
C D C LQ H MF C+K C N ++ LR EK
Sbjct: 2088 CENDVDCRRLLQLIHF--GEMFNPSCCAKTCDNCLKELRWVEK 2128
>01_01_1102 -
8734984-8736090,8736430-8736557,8736671-8736708,
8736815-8737030,8737252-8737413,8738381-8738559,
8738693-8738799,8738918-8739082,8739201-8739284,
8739364-8739559
Length = 793
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 180 TMQENLARLCFHKHKNHTRSHDRHGEKHKKVNEVVY 215
++QE L K ++SH H +KHK N + Y
Sbjct: 755 SLQEELENCTLEKPNMDSKSHRSHDDKHKTGNVLSY 790
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.131 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,245,396
Number of Sequences: 37544
Number of extensions: 232693
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 10
length of query: 238
length of database: 14,793,348
effective HSP length: 80
effective length of query: 158
effective length of database: 11,789,828
effective search space: 1862792824
effective search space used: 1862792824
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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