Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001930-TA|BGIBMGA001930-PA|undefined
(238 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3271| Best HMM Match : PTPS (HMM E-Value=6.6) 36 0.030
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.090
SB_14925| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.21
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 33 0.28
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 32 0.36
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_45116| Best HMM Match : EGF (HMM E-Value=0) 31 0.84
SB_6077| Best HMM Match : EGF (HMM E-Value=0) 31 0.84
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_41271| Best HMM Match : EGF (HMM E-Value=1.2e-20) 29 2.6
SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8) 29 2.6
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_48589| Best HMM Match : EGF (HMM E-Value=2e-19) 29 3.4
SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41) 29 3.4
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25) 29 4.5
SB_30034| Best HMM Match : Metallothio (HMM E-Value=4.1) 29 4.5
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12) 28 5.9
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24) 28 5.9
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 28 7.8
SB_54576| Best HMM Match : Nucleoplasmin (HMM E-Value=2.6) 28 7.8
SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12) 28 7.8
>SB_3271| Best HMM Match : PTPS (HMM E-Value=6.6)
Length = 191
Score = 35.9 bits (79), Expect = 0.030
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 57 CPNECSNALIALTSTEEGKELMSCEC--EDDYCIEAKDRIDVC 97
CP EC+ A+ LTS G+ CEC D C+ K R+ C
Sbjct: 84 CPRECAIAIHNLTSHSVGELFQDCECVNRDSICLTLKARMRRC 126
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 34.3 bits (75), Expect = 0.090
Identities = 34/154 (22%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 19 PCTEARNRCMYRTGCGAALSNYMMMC--------------ERVLTTDLPPTACPNECSNA 64
PC++ N+C+ R C L N++ +C + VLT +L A +
Sbjct: 2473 PCSKNNNKCL-RGKCVPKLDNFVCVCPEGWVGEICHGPSTDEVLTAELVKAAAEKNVTII 2531
Query: 65 LIAL---TSTEEGKELMSCECEDDYCIEAKDRIDVCRSQVMKGASD----VIPSCSLSQL 117
IA+ T T E +S +D++ I +++ ++ V+ A+ V+ C +
Sbjct: 2532 AIAIGNETRTMEINRFVSSP-KDNHKIISRNFSELPNENVISKANQTVWSVVKPCESNP- 2589
Query: 118 ICLADAQCSTALQYYHHLCRSMFRGRKCSKKCIN 151
C+ +A+C+ ++ + C + F G+ C + N
Sbjct: 2590 -CMNEAKCTEMIRDFQCECSAEFTGKNCELRKTN 2622
>SB_14925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 2/94 (2%)
Query: 109 IPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEILRKQEKAAALTVC 168
+ CS Q C A CS L + C+ F G + K +N E LR T
Sbjct: 100 VDECSDGQSPCHVSANCSNTLGSFTCTCKDGFTGDGLTCKDVN--ECLRPNACHVNATCT 157
Query: 169 QCDGTEDYDCPTMQENLARLCFHKHKNHTRSHDR 202
G+ + C T+ C K + H R
Sbjct: 158 NTIGSYNCSCQTLHHGDGHSCLLKGTSCQEIHSR 191
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 33.1 bits (72), Expect = 0.21
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 23/129 (17%)
Query: 20 CTEARNRCMYRTGCGAALSNYMMMCERVLT------TDLPPTACPNECSNALIALTSTEE 73
C +N C C ++ +Y +C+ T TDL P C C + L + +
Sbjct: 545 CKLPKNDCDVNAECINSIGSYSCICKPGFTGNGKTCTDLGPVKCDPTCGD----LETCVD 600
Query: 74 GKELMSCECEDDYCIEAKDRIDVCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYH 133
K +C C++ Y Q++ G C S L+C +A C+ Y
Sbjct: 601 IKGKFTCVCKNGY-------------QIVDGECKDKNECVGSDLLCDPNALCTNTPGSYL 647
Query: 134 HLCRSMFRG 142
C+S F+G
Sbjct: 648 CRCKSGFQG 656
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 32.7 bits (71), Expect = 0.28
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 11/128 (8%)
Query: 56 ACPNECSNALIALTSTEEGKELMSCE--CEDDYCIEAKDRIDVCRSQVMKGASDVIPSCS 113
+C EC A ALT +G SC+ CE C + + C+ Q K + SC
Sbjct: 360 SCKQECKTAKCALTCKGKGT-YGSCDQTCERGKCQLRCNTRENCK-QTCKEGKCLTMSCK 417
Query: 114 LSQLI--CLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEILRKQEKAAALTVCQCD 171
C + QC A CR + GR CS +C ++ K V C
Sbjct: 418 AKNCDQECPGN-QCRMACT--SDKCRQVCAGRSCSMECARGTRECHQECKGGG-CVFNCR 473
Query: 172 GTE-DYDC 178
G + Y C
Sbjct: 474 GKKCSYSC 481
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 32.3 bits (70), Expect = 0.36
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 191 HKHKNHTRSHDRHGEKHK 208
H H+NH SH+ HG HK
Sbjct: 329 HSHENHGHSHENHGHSHK 346
Score = 31.9 bits (69), Expect = 0.48
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 191 HKHKNHTRSHDRHGEKHK 208
H HK+H SHD HG H+
Sbjct: 343 HSHKHHGHSHDNHGHSHE 360
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 191 HKHKNHTRSHDRHGEKHK 208
H H+NH SH+ HG H+
Sbjct: 315 HSHENHGHSHENHGHSHE 332
Score = 30.7 bits (66), Expect = 1.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 191 HKHKNHTRSHDRHGEKHK 208
H H+NH SH+ HG H+
Sbjct: 322 HSHENHGHSHENHGHSHE 339
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 191 HKHKNHTRSHDRHGEKHKKVNE 212
H H NH SH+ HG H +E
Sbjct: 350 HSHDNHGHSHENHGHSHGHSHE 371
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 191 HKHKNHTRSHDRHGEKH 207
H H+NH SH HG H
Sbjct: 336 HSHENHGHSHKHHGHSH 352
>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 21 TEARNRCMYRTGCGAALSNYMMMCERVLTTDLPPTA-CPNECSNAL 65
TE+ R + CG Y CER +D+ A C CSN+L
Sbjct: 294 TESETRLLSSLPCGQNEHEYSNCCERACQSDIVRHANCSRNCSNSL 339
>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
Length = 2023
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 109 IPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKK 148
I CS + CL A CS L Y C S F+G +C +K
Sbjct: 1295 IDECSSNP--CLNGATCSDLLNNYTCTCASGFQGERCEQK 1332
>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
Length = 1165
Score = 31.1 bits (67), Expect = 0.84
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 81 ECEDDYCIEA---KDRIDVCRSQVMKGASDVIPSCSLSQLI---CLADAQCSTALQYYHH 134
ECED C +D I+ R G + +++ CL +A+C+ + Y
Sbjct: 598 ECEDSPCANGASCEDLINDFRCHCPAGFQGRTCAVDINECATSPCLNEAKCTDVVSGYRC 657
Query: 135 LCRSMFRGRKCSK 147
CRS + G +C +
Sbjct: 658 TCRSGYTGTRCER 670
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 30.7 bits (66), Expect = 1.1
Identities = 40/168 (23%), Positives = 58/168 (34%), Gaps = 18/168 (10%)
Query: 26 RCMYRTG-CGAALSNYMMMCERVLTTDLPPTACPNECSNALIALTSTEEGKELMSCECED 84
RCM RT C ++ C V+ CP + AL + E S C +
Sbjct: 1973 RCMNRTNVCASSPCQNNATCRDVMGH--VKCTCPTGFTGALCET----DINECASNPCNN 2026
Query: 85 DYCIEAKDRIDVCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRK 144
C++ R D Q G + + CL C + Y C + GR
Sbjct: 2027 GTCLQGIGRYDCSCFQGFTGQNCQVDINECQSFPCLNSGTCRDEVGNYSCRCPYGYEGRN 2086
Query: 145 CSKKCINSIEILRKQ-EKAAALT------VCQCD-GTEDYDCPTMQEN 184
C IN+ + A T VC C G D++C T+ +N
Sbjct: 2087 CE---INTDDCAANPCLHGATCTDLVGGFVCTCALGYTDHNCSTIIDN 2131
>SB_14245| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/74 (21%), Positives = 26/74 (35%)
Query: 18 MPCTEARNRCMYRTGCGAALSNYMMMCERVLTTDLPPTACPNECSNALIALTSTEEGKEL 77
+PC + C Y C S C+ V+ P CP + L S ++
Sbjct: 142 IPCIKGMGSCDYSNFCEMVRSAAFSKCDEVMEAQGVPCDCPIPTGQFALPLQSIPVPADM 201
Query: 78 MSCECEDDYCIEAK 91
+S D+ + K
Sbjct: 202 LSAIPVPDWVVNGK 215
>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 854
Score = 29.9 bits (64), Expect = 1.9
Identities = 32/137 (23%), Positives = 49/137 (35%), Gaps = 9/137 (6%)
Query: 54 PTACPNECSNALIALTSTEEGKELMSCECEDDYCIEAKDRIDVCRSQVMKGASDVIPSCS 113
P N+C + L C C+ Y ++ I +++M G I CS
Sbjct: 214 PCKLDNKCPSDTHCHPDKVHRTGLYYCTCKRGY----EEGIKGWHAELMLGECKDIDECS 269
Query: 114 LSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEILRKQEKAAALTVCQCDGT 173
L C A+A+C YH C + + G+ C++ E T C +
Sbjct: 270 RGAL-CPANARCINTPGSYHCACVNGYTGQ---GTCMDVDECAADDGLCHKGTTC-VNTM 324
Query: 174 EDYDCPTMQENLARLCF 190
Y C + E L CF
Sbjct: 325 GSYRCQDINECLTDPCF 341
>SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 109 IPSCSLSQLICLADAQCSTALQYYHHLCRSMFR--GRKCS--KKCINSIEILRKQEK 161
I C+ IC +A+C+ + YH +C F GR C+ +C+ K K
Sbjct: 238 IDECATGDHICDKNAKCNNTIGSYHCMCNPGFSGDGRNCTDIDECVTGDHTCDKNAK 294
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 112 CSLSQLICLADAQCSTALQYYHHLCRSMFR--GRKCS 146
CS C +A+C+ + YH +C F GR+C+
Sbjct: 159 CSAGNHTCGKNAKCNNTIGSYHCMCNPGFSGDGRECT 195
>SB_41271| Best HMM Match : EGF (HMM E-Value=1.2e-20)
Length = 169
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 87 CIEAKDRID-VCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKC 145
C E D + C+++ DV C +S CL C + + LC F G C
Sbjct: 16 CTEVDDGFECACQAEYKGTTCDVENRCYISP--CLNGGTCMSTASSFQCLCLEGFSGSSC 73
Query: 146 SKKCINSIEILRKQEK----AAALTV-CQCDGTEDYDCP 179
++++ R+ + AL + G E + CP
Sbjct: 74 EGNYTLNLQMQRRNNQDGRVVKALDLSSNVRGFEPHSCP 112
>SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)
Length = 427
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 150 INSIEILRKQEKAAALTVCQCDGTEDYDCPTMQENLARLCFHKHKNHTRSHDRHGEKHKK 209
+NS E+L K K +A+T+ +D+D +++ LARL H+ D + ++
Sbjct: 359 MNSTELLMKS-KESAITINLSHSEKDFDYDSLELELARLRQSMHRTLEDFRDMKEDTYRL 417
Query: 210 VNEV 213
+E+
Sbjct: 418 KHEI 421
>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 119 CLADAQCSTALQYYHHLCRSMFRGRKC 145
CL D C Y +CR FRG+ C
Sbjct: 530 CLNDGTCKETPAGYRCMCRPEFRGKNC 556
>SB_48589| Best HMM Match : EGF (HMM E-Value=2e-19)
Length = 112
Score = 29.1 bits (62), Expect = 3.4
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 119 CLADAQCSTALQYYHHLCRSMFRGRKC 145
CL C+ + Y+H CR+ + G++C
Sbjct: 46 CLNGGTCTNHVNYFHCECRAGYAGKQC 72
>SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)
Length = 653
Score = 29.1 bits (62), Expect = 3.4
Identities = 32/138 (23%), Positives = 47/138 (34%), Gaps = 14/138 (10%)
Query: 20 CTEARNRCMYRTG---CGAALSNYMMMCERVLTTDLPPTACPNECSNALIALTSTEEGKE 76
C + +CM R G C Y+ D T +EC NA T
Sbjct: 372 CPSDKTKCMNRDGFFECMCKADGYVWYENECTDVDECKTNA-HECKNAFCHNTLGS---- 426
Query: 77 LMSCECEDDYCIEAKDRIDVCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLC 136
C C++ Y + KD + + Q + D +L + DA C L Y C
Sbjct: 427 -YKCSCKEGYTFKDKDPV---QKQCVD--MDECEEQEYRKLCEMMDANCKNTLGSYKCQC 480
Query: 137 RSMFRGRKCSKKCINSIE 154
+ KKC++ E
Sbjct: 481 PLGYSMNNEMKKCVDRDE 498
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 119 CLADAQCSTALQYYHHLCRSMFRGRKCSKKCIN 151
CL D C+ L Y C + F GR C K N
Sbjct: 302 CLNDGVCTAFLHDYECACPAGFMGRHCEGKVSN 334
>SB_53611| Best HMM Match : Homeobox (HMM E-Value=1.2e-25)
Length = 389
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 96 VCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEI 155
VC + + + CS+ A +CS +QY +C R + S C S+ +
Sbjct: 75 VCECSMRVQYASAVCECSMRVQYASAVCECSMRVQYASAVCECSMRVQYASAVCECSMRV 134
Query: 156 LRKQEKAAALTVCQCDGTEDY 176
+ A+A VC+C Y
Sbjct: 135 ----QYASA--VCECSMRVQY 149
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 85 DYCIEAKDRIDVCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRK 144
D + KD R ++ AS V CS+ A +CS +QY +C R +
Sbjct: 52 DQILAPKDEESRRRLSYVQYASAVC-ECSMRVQYASAVCECSMRVQYASAVCECSMRVQY 110
Query: 145 CSKKCINSIEILRKQEKAAALTVCQCDGTEDY 176
S C S+ + + A+A VC+C Y
Sbjct: 111 ASAVCECSMRV----QYASA--VCECSMRVQY 136
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 96 VCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEI 155
VC + + + CS+ A +CS +QY +C R + S C + +
Sbjct: 101 VCECSMRVQYASAVCECSMRVQYASAVCECSMRVQYASAVCECSMRVQYASAVCECTHRV 160
Query: 156 LRKQEKAAALTV 167
L + L +
Sbjct: 161 LNLSDSCERLAI 172
>SB_30034| Best HMM Match : Metallothio (HMM E-Value=4.1)
Length = 117
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 96 VCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEI 155
VC + + + CS+ A +CS +QY +C R + S C S+ +
Sbjct: 9 VCECSMRVQYASAVCECSMRVQYASAVCECSMRVQYASAVCECSMRVQYASAVCECSMRV 68
Query: 156 LRKQEKAAALTVCQCDGTEDY 176
+ A+A VC+C Y
Sbjct: 69 ----QYASA--VCECSMRVQY 83
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 96 VCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEI 155
VC + + + CS+ A +CS +QY +C R + S C S+ +
Sbjct: 35 VCECSMRVQYASAVCECSMRVQYASAVCECSMRVQYASAVCECSMRVQYASAVCECSMRV 94
Query: 156 LRKQEKAAALTVCQCDGTEDY 176
+ A+A VC+C Y
Sbjct: 95 ----QYASA--VCECSMRVQY 109
>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 479
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 11/106 (10%)
Query: 44 CERVLTTDLP-PTACPNECSNALIALTSTEEGKELMSCECEDDYCIEAKDRIDVCRSQVM 102
CE++ DL C C L+ + +E E ++ C++ +A ++ C ++
Sbjct: 121 CEQLRCCDLAGEEQCKKGCKRVLLKKDNAKESMEGLTNACKEPLQEKANQKMWNC---LL 177
Query: 103 KGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKK 148
AS C QL + C T Q + +LC F+G+K + K
Sbjct: 178 SPASSY---CKDMQL----EPVCDTDGQQHPNLCSLHFQGKKLAYK 216
>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
Length = 353
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 144 KCSKKCINSIEILRKQEKAAALTVCQCDGTEDYDCPTMQE 183
+C K CI + ++L + +T C G DY C + E
Sbjct: 285 RCDKSCIKNRKVLHSIVEVTPITSC---GRRDYSCSVIAE 321
>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
Length = 398
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 144 KCSKKCINSIEILRKQEKAAALTVCQCDGTEDYDCPTMQE 183
+C K CI + ++L + +T C G DY C + E
Sbjct: 330 RCDKSCIKNRKVLHSIVEVTPITSC---GRRDYSCSVIAE 366
>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 119 CLADAQCSTALQYYHHLCRSMFRGRKC 145
C AQC+ + Y +C+S F G+ C
Sbjct: 586 CNNGAQCNNMVDGYRCMCKSGFTGKNC 612
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 61 CSNALIALTSTEEGKELMSCECEDDYCI--EAKDRIDVCRS-QVMKGASDVIPSCS 113
C + +A+T +EG+ + E DY I E++D D+ R Q + G +D C+
Sbjct: 182 CGASKVAITDLDEGRLKKARELGADYTIKVESRDGRDMARKVQELLGPADQTVECT 237
>SB_54576| Best HMM Match : Nucleoplasmin (HMM E-Value=2.6)
Length = 281
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 45 ERVLTTDLPPTACPN--ECSNALIALTSTEEGKELMSCECEDD-------YCIEAKDRID 95
E +LT PT PN + + GK+ + E+D ++ D +D
Sbjct: 86 ENLLTPKPTPTPAPNTHRTGHPVFRRRPWYNGKKRSAASWEEDDEEDAVTKVLKGDDEVD 145
Query: 96 VCRSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLC 136
V +++ K A S ++ C+ Q + Y+HLC
Sbjct: 146 VSNAEISKRAEATEGITSSKKISCITRGQ-ESKFPGYNHLC 185
>SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12)
Length = 873
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 59 NECSNALIALTSTEEGKELMSCECEDDYCIEAKD 92
N C N + TE GK C C D YC D
Sbjct: 33 NSCENRCVDYLVTEGGKTPPKCHC-DPYCTMLND 65
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.131 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,573,315
Number of Sequences: 59808
Number of extensions: 303382
Number of successful extensions: 1300
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1224
Number of HSP's gapped (non-prelim): 86
length of query: 238
length of database: 16,821,457
effective HSP length: 80
effective length of query: 158
effective length of database: 12,036,817
effective search space: 1901817086
effective search space used: 1901817086
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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