GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001930-TA|BGIBMGA001930-PA|undefined
         (238 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10...    29   2.8  
At2g21860.1 68415.m02597 violaxanthin de-epoxidase-related conta...    29   2.8  
At3g10410.1 68416.m01248 serine carboxypeptidase III, putative s...    28   4.8  
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-...    28   6.4  
At4g11720.1 68417.m01870 hypothetical protein                          28   6.4  

>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 18  MPCTE-ARNRCMYRTGCGAALSNYMMMCERVLTTDLPP 54
           +PC   ++N     + CG  +S + MM  +V+TT +PP
Sbjct: 834 VPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPP 871


>At2g21860.1 68415.m02597 violaxanthin de-epoxidase-related contains
           weak similarity to violaxanthin de-epoxidase precursor
           gi|1438875|gb|AAC49373
          Length = 522

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 98  RSQVMKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIE 154
           RS+     S ++ +C    L CL D  C  ALQ  +  C  +   + CS +CI S E
Sbjct: 231 RSKGFSTLSCMVKNCGPQILNCLLDPNCRKALQCLNQ-CSPV--DQVCSYRCIASYE 284


>At3g10410.1 68416.m01248 serine carboxypeptidase III, putative
           similar to serine carboxypeptidase III from Oryza sativa
           SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
           vulgare SP|P21529, Triticum aestivum SP|P11515; contains
           Pfam profile PF0450 serine carboxypeptidase
          Length = 516

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 108 VIPSCSLSQLICLADAQCSTALQYYHHLCRSMFRGRKCSKKCINSIEILRK 158
           ++P C LS  +C  D   S    Y   +C S+F G       +N  +I +K
Sbjct: 296 IVPLCELSIKLCGTDGTTSCLASYL--VCNSLFSGVMSHAGGVNYYDIRKK 344


>At5g53430.1 68418.m06640 PHD finger family protein / SET
           domain-containing protein (TX5) contains Pfam domain,
           PF00628: PHD-finger and PF00856: SET domain; identical
           to cDNA  trithorax 5 (TX5) partial cds GI:16118406
          Length = 1043

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 43  MCERVLTTDLPPTACPNECSNALIALTSTEEGKELMSCEC-EDDYCIEAKDRIDVCRSQV 101
           +C+   T ++    C        +  T  E     ++C   + + C  ++++++     +
Sbjct: 651 VCKACETPEIKRECCLCPVKGGALKPTDVETLWVHVTCAWFQPEVCFASEEKMEPALGIL 710

Query: 102 MKGASDVIPSCSLSQLICLADAQCSTALQYYHHLCRS 138
              +S+ +  C + + I  +  QC     YYH +C S
Sbjct: 711 SIPSSNFVKICVICKQIHGSCTQCCKCSTYYHAMCAS 747


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 191 HKHKNHTRSHDRHGEKHKKVNEVV 214
           H H +H R+H RH   H + ++V+
Sbjct: 579 HHHNHHRRTHQRHKHHHGQDDDVL 602


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.131    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,968,616
Number of Sequences: 28952
Number of extensions: 185081
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 7
length of query: 238
length of database: 12,070,560
effective HSP length: 79
effective length of query: 159
effective length of database: 9,783,352
effective search space: 1555552968
effective search space used: 1555552968
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)