Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001929-TA|BGIBMGA001929-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase,
IPR002539|MaoC-like dehydratase, IPR003033|Sterol-binding
         (722 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    47   5e-07
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               31   0.025
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.41 

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 47.2 bits (107), Expect = 5e-07
 Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 11/185 (5%)

Query: 56  VVKEIKDKGGVAV---ADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQ 112
           +V+E+K K G  V    D ++  +  K+I+    N G IDILINNA I  D +       
Sbjct: 47  LVEELKSKPGKLVPLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVL 106

Query: 113 DWDLIQAVHLKGAFKTTHAAWETFRKQ--KYGRIVMTSSNAGLF---GNFGQANYSAAKL 167
           DW  I  ++L G         +  +K+    G IV  +  +GL     N  +  Y A+K 
Sbjct: 107 DWKKIFDINLLGLTCMIQEVLKLMKKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKC 166

Query: 168 GLVGLANTLAIEGA--KYNIKVNTIVP-TAASRLTEDILPPEMYEAMKPELIAPVVAYMV 224
            L  L + L  E A  + NIKV +I P    + +T   L      A+KP+ ++  V + +
Sbjct: 167 ALTTLTDCLRSELAQCESNIKVISISPDLVETDMTAQWLKENSRLALKPKDVSNCVLFAL 226

Query: 225 HESFN 229
               N
Sbjct: 227 QTPDN 231


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 31.5 bits (68), Expect = 0.025
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)

Query: 263 VTIESVKENWSKVVDMRGAKHLEKIADVTLELVDKLQEFEERSKLDGDKDSYWTTYDYNA 322
           V +E+ K+N SKV+D   ++ ++ + +V L +VD+L +   +  L    D++    D   
Sbjct: 349 VALEAEKKNLSKVIDQH-SQLIDTLENV-LAIVDRLMDETNQLTLQETADAFKDLQDKYY 406

Query: 323 KDLVIYALGVGAS 335
           ++  +Y LG  AS
Sbjct: 407 EEYKMYELGELAS 419


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 0.41
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 419 GSSAVAIVNSEIFQNKQLVCRTQQHIFVL 447
           G   VAIV++   +++Q +CR + H F L
Sbjct: 718 GPRGVAIVSASTARSEQFLCRYEAHCFAL 746


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,330
Number of Sequences: 429
Number of extensions: 7660
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 722
length of database: 140,377
effective HSP length: 63
effective length of query: 659
effective length of database: 113,350
effective search space: 74697650
effective search space used: 74697650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)