GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001929-TA|BGIBMGA001929-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase,
IPR002539|MaoC-like dehydratase, IPR003033|Sterol-binding
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    78   5e-15
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    69   3e-12
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ...    63   1e-10
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    57   7e-09
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    57   7e-09
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    50   9e-07
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    50   1e-06
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    48   6e-06
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    45   4e-05
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    42   2e-04
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    42   3e-04
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    40   0.001
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    40   0.001
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    38   0.006
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    32   0.32 
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    31   0.42 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    29   3.0  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   3.0  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    28   4.0  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   6.9  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   6.9  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 9/153 (5%)

Query: 48  GKSNAADAVVKEIKDKGGVAVADYNSVVEGEK-LIKT---AIDNFG-RIDILINNAGI-L 101
           G++  A     E++DK GV    Y+  +E    +I+T   A++  G R+D++I NAGI +
Sbjct: 41  GRNKKALEYAAELRDKHGVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGIAI 100

Query: 102 RDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQ-- 159
              S     E  W  +  ++L GA+ T  AA   F+KQ  G ++ T+S +G   N+ Q  
Sbjct: 101 PHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLIFTASMSGHIANWPQQW 160

Query: 160 ANYSAAKLGLVGLANTLAIEGAKYNIKVNTIVP 192
           A+Y A K  +  LA  LA+E A +  +VN++ P
Sbjct: 161 ASYHATKAAVKHLARALAVEWAPF-ARVNSVSP 192


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 40/134 (29%), Positives = 61/134 (45%)

Query: 59  EIKDKGGVAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQ 118
           +++D      AD +   + E  I+  I   G ID+LINNAG+  D  F +++ + WD   
Sbjct: 42  KVQDAALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDV 101

Query: 119 AVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAI 178
           ++ L+G + T         KQ  G  ++   +       G   YSAAK GL  L   LA+
Sbjct: 102 SLVLRGNYLTQRYVIPHMAKQGKGGSIVNIGSVNGHIYLGSPAYSAAKAGLENLTKALAV 161

Query: 179 EGAKYNIKVNTIVP 192
                 I+VN   P
Sbjct: 162 RYGPLGIRVNVCAP 175


>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 261

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 3/107 (2%)

Query: 88  FGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMT 147
           F  IDI++ N GI   KS   MT +++     V+L G F   H A   F+KQ +G +V T
Sbjct: 96  FDTIDIVVPNNGICTGKSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQKQGHGSLVAT 155

Query: 148 SSNAGLFGNFGQAN--YSAAKLGLVGLANTLAIEGAKYNIKVNTIVP 192
           +S +G+  N  Q    Y+ +K G++ L  +LA+E  K+  +VN + P
Sbjct: 156 ASMSGVVVNVPQQQCAYNTSKAGVIQLIKSLAVEWRKF-ARVNCVSP 201


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 39/127 (30%), Positives = 55/127 (43%)

Query: 66  VAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGA 125
           V   D N+    +K ++ AI +FGRID+L+NNAG          TE+    I   ++ GA
Sbjct: 18  VTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGA 77

Query: 126 FKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIEGAKYNI 185
            +   A    FR Q  G I+  SS  G         Y   K  + G++  L  E     +
Sbjct: 78  LEVIKAITPIFRSQHNGMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGV 137

Query: 186 KVNTIVP 192
           KV  I P
Sbjct: 138 KVKIIEP 144


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 57.2 bits (132), Expect = 7e-09
 Identities = 39/127 (30%), Positives = 55/127 (43%)

Query: 66  VAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGA 125
           V   D N+    +K ++ AI +FGRID+L+NNAG          TE+    I   ++ GA
Sbjct: 18  VTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGA 77

Query: 126 FKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIEGAKYNI 185
            +   A    FR Q  G I+  SS  G         Y   K  + G++  L  E     +
Sbjct: 78  LEVIKAITPIFRSQHNGMIINVSSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGV 137

Query: 186 KVNTIVP 192
           KV  I P
Sbjct: 138 KVKIIEP 144


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 50.4 bits (115), Expect = 9e-07
 Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 2/125 (1%)

Query: 70  DYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTT 129
           D   V   E   K A   FG +DI+INNAG      F     ++      V+  G    T
Sbjct: 55  DVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVAYIT 114

Query: 130 HAAWETFRKQ-KYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIE-GAKYNIKV 187
             A    R+  K GRI+  SS AG + +   + Y+A+K  + GL+ T+  E    +NI +
Sbjct: 115 KEALNLMRESGKGGRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTIMRELDPNWNIAI 174

Query: 188 NTIVP 192
             + P
Sbjct: 175 TIVQP 179


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 8/131 (6%)

Query: 66  VAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGA 125
           + +AD  S ++  K I  +++    ID +++ AG+L+     + +E++ D I   +L  A
Sbjct: 55  LTIADVQSDMKNLKSIFESVE----IDTVVHAAGVLQSSLCVRTSEKEIDSIICTNLVSA 110

Query: 126 FKTTHAA---WETFRKQKYGRIVMT-SSNAGLFGNFGQANYSAAKLGLVGLANTLAIEGA 181
            K +  A   W   +  +  R+++  SS    +   G + Y+A+K GL      LA E A
Sbjct: 111 IKLSKMAILEWFRNKNSERDRLILNISSRLSTYALPGTSVYAASKAGLESFTKVLAAEVA 170

Query: 182 KYNIKVNTIVP 192
              I+VN I P
Sbjct: 171 SKGIRVNAISP 181


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 29/141 (20%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 58  KEIKDKGGVAVADYNSVVEGEKLIKTAIDN----FGRIDILINNAGILRDKSFTKMTEQD 113
           K++ ++ GV V      +     ++  ++     F  I +++ NAG+   +S       +
Sbjct: 62  KKLAEETGVQVHTLKIDISRSDTVEAGVEEIQKIFKEIHVVVANAGMPFRRSVLDSPPHE 121

Query: 114 WDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQ--ANYSAAKLGLVG 171
           ++ +  ++    ++  +   + F+KQ +G ++ T+S +    N  Q  A Y A+K  +  
Sbjct: 122 FEKVMNINTNSVYRVAYYMGKIFKKQGFGNLIATASMSATIVNAPQHIAAYCASKAAVRQ 181

Query: 172 LANTLAIEGAKYNIKVNTIVP 192
           L   LA+E A++  ++N++ P
Sbjct: 182 LCKALAVEWAEF-ARINSVSP 201


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 7/175 (4%)

Query: 40  LGSARDGAGKSNAADAVVKEIKDKGGVAVADYNSVVEGEKLIKTAIDNFGRIDILINNAG 99
           L +AR      N   A ++ +K    + V D +SV E E+ ++   +  G +  LINNAG
Sbjct: 33  LATARQVERMDNLTKAGLQTLK----LDVTDEDSVREVEQEVRKFTN--GSLHYLINNAG 86

Query: 100 ILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQ 159
                    +  +D   +  V+  G  +   A      + K G IV  +S          
Sbjct: 87  APCSAPAIDLDIEDVSKVMDVNFYGVIRMNKAFQHQLIRAK-GTIVNVNSLVSYVPFAFN 145

Query: 160 ANYSAAKLGLVGLANTLAIEGAKYNIKVNTIVPTAASRLTEDILPPEMYEAMKPE 214
           A Y+A+K  L+  +NTL IE A + ++V +I+        +      M EA  PE
Sbjct: 146 AAYNASKAALLAYSNTLRIELAPFGVQVTSIMTGGVQTKIQSKPLGTMTEAAIPE 200


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 4/132 (3%)

Query: 80  LIKTAIDNFGRIDILINNAGILR-DKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRK 138
           L+  A+   G ID+L+NN    +  +S   + ++ WDL    ++   F  T AA    + 
Sbjct: 111 LVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAAISHMKS 170

Query: 139 QKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIEGAKYNIKVNTIVP-TAASR 197
                IV  SS     G     +Y++ K  +      L+ + A++ I+VN + P    + 
Sbjct: 171 G--SSIVNCSSINAYVGRPDLLDYTSTKGAITAFTRGLSNQYAQHGIRVNAVAPGPIYTP 228

Query: 198 LTEDILPPEMYE 209
           L     P E  E
Sbjct: 229 LVSSTFPKEKIE 240


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 5/151 (3%)

Query: 47  AGKSNAADAVVKEIKDKGGVAVADYNSVVEGEKLIKTAIDN----FGRIDILINNAGI-L 101
           A + +  + + KE++ K  V+V      V   K I   I++    F  ID+LINNAG+ L
Sbjct: 38  ARRFSTVEEIAKELESKYEVSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLAL 97

Query: 102 RDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQAN 161
                  +   D   +   ++ G    T A    F  +  G I+   S AG     G + 
Sbjct: 98  GTDKVIDLNIDDAVTMITTNVLGMMAMTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSV 157

Query: 162 YSAAKLGLVGLANTLAIEGAKYNIKVNTIVP 192
           Y + K  L    + L  E     I++  + P
Sbjct: 158 YCSTKSALAQFTSALRKETIDTRIRIMEVDP 188


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 490  MSGDLNPLHIDPNVAT--ASGHKKPILHGLASLGFSARHVLAKFGGNDSSNVKALKARFV 547
            +SGD NP+H+ P  A          I HG+ +   + R V      N    VK  +  FV
Sbjct: 1572 VSGDYNPIHVSPTFAAFVELPGTHGITHGMYTSAAARRFVETYAAQNVPERVKHYEVTFV 1631

Query: 548  KPVMPGETLVTEM----WVEGKR-VHFQTKTKETGNTVIAG 583
              V+P   L+T++     + G++ +  +   +ET   V+ G
Sbjct: 1632 NMVLPNTELITKLSHTGMINGRKIIKVEVLNQETSEPVLVG 1672


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 77  GEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQD---WDLIQAVHLKGAFKTTHAAW 133
           G+  I+TAI  FG++D +I NAG+L  +   K+ + D   W  +  ++     +T   A 
Sbjct: 65  GKASIETAIKKFGKLDSVILNAGVL--EPIAKIADADINEWRKLFDINFFSVVETVKYAI 122

Query: 134 ETFRKQKYGRIVMTSSNAGLFGNFGQANYSAAKLGLVGLANTLAIE 179
              RK K G IV+ SS A +      A Y  +K  +  L   L  E
Sbjct: 123 PHLRKTK-GTIVIVSSGAAVRVFPAWAAYCCSKAAINMLVMNLGSE 167


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 68  VADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDK-SFTKMTEQDWDLIQAVHLKGAF 126
           V    S  E  + +  A+D    ID+L  N+GI +   +  +  E+ W+     ++ G  
Sbjct: 63  VTSQQSANEAAQSVAKAVDG---IDVLWLNSGICQSYYTVMEAPEEVWNAHYQTNVLGPI 119

Query: 127 KTTHAAWETFRKQKYGRIVMTSSNAGLFGNFGQANYSA 164
               A +    K+K  +++ TSS  G  G+F    +SA
Sbjct: 120 HVFKAFYPLLTKKKTRQVIFTSSECGSMGDFRATGFSA 157


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 15/141 (10%)

Query: 91  IDILINNAGILRD-KSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFRKQKYGRIVMTSS 149
           ID+L  N+GI +  +   K +++ W      ++ G      A +   ++ K   IV TSS
Sbjct: 84  IDVLWVNSGISKSFQPVLKTSDELWMSHYQTNVLGPIHVYQAFYHLLKEGKLKNIVFTSS 143

Query: 150 NAGLFGNFGQANYSA---AKLGLVGLANTLAIEGAKYNIKVNTIVP---------TAASR 197
            A   G      YSA   +K  L      ++ E  K    V +I P          A  +
Sbjct: 144 MAACMGGVRPNTYSAYGQSKAALNYTMKEISFELEKDGFVVVSIHPGVVNTDMFVNAMQK 203

Query: 198 LTEDILPPEMYEAMKPELIAP 218
           L      PEM E++K   I+P
Sbjct: 204 LASKY--PEMVESIKSNAISP 222


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 257 KRPSDPVTIESVKENWSKVVDMRGAKH-LEKIADVTLELVDKLQEFEERSKLDGDKDSYW 315
           KRP++P +  S   N+S     +   H +EK+ D+ L+    L++       D ++   W
Sbjct: 432 KRPTEPASSNSSLNNFSGFSTKKDVLHAIEKVYDLLLDFEQALRKASTLETTDQEQIDTW 491

Query: 316 TTYDYNAKDLVIYALGVGASVE 337
            T      + +  AL +  S+E
Sbjct: 492 KTTLSEKLESIWKALYINESLE 513


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/75 (22%), Positives = 34/75 (45%)

Query: 456 RNSKNAIGVGNAPKRNPDAVVEQRTAEDQAALYRMSGDLNPLHIDPNVATASGHKKPILH 515
           + S+N +G+ NAP  N + +V+ + AE   A+ +    L  +   P   + S  +  +  
Sbjct: 840 KESENTVGLLNAPGENIEELVDNQLAETAQAIQQAILRLQNIAAKPKDDSLSPSELQVHD 899

Query: 516 GLASLGFSARHVLAK 530
            L S   +    +A+
Sbjct: 900 SLLSASIAITEAIAR 914


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 494 LNPLHIDPNVATASGHKKPILHGLASLGFSARHVLAKFGGNDSSNVKALKARFVKPVMP 552
           + P  +  NV   +   + ++H    L FSA   +      +S N KA+  R  KPV+P
Sbjct: 431 IKPTQLSENVFDPTSSGELVIHNFGFLSFSASRPMNLLV--ESVNPKAVSWRSAKPVVP 487


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)

Query: 336 VENPTDLKFLYESHENFSPL--PSFFILAGMCMEAP 369
           +EN +DL+ LYE+  N  PL  PS+F    +C+  P
Sbjct: 177 IENNSDLETLYENIHNVLPLITPSYFFTL-LCLILP 211


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 337 ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGEQYIE 394
           ENP   K +Y+ H N  P  S          +P+  N +P GK   +T V+   + +E
Sbjct: 206 ENPFLKKIIYDIHHNIYPSTS------PNPTSPVTLNRLPLGKKDSYTLVIASNKLLE 257


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 337 ENPTDLKFLYESHENFSPLPSFFILAGMCMEAPIVANAMPPGKFADFTNVLHGEQYIE 394
           ENP   K +Y+ H N  P  S          +P+  N +P GK   +T V+   + +E
Sbjct: 206 ENPFLKKIIYDIHHNIYPSTS------PNPTSPVTLNRLPLGKKDSYTLVIASNKLLE 257


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,529
Number of Sequences: 5004
Number of extensions: 132066
Number of successful extensions: 338
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 28
length of query: 722
length of database: 2,362,478
effective HSP length: 78
effective length of query: 644
effective length of database: 1,972,166
effective search space: 1270074904
effective search space used: 1270074904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)