GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001929-TA|BGIBMGA001929-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase,
IPR002539|MaoC-like dehydratase, IPR003033|Sterol-binding
         (722 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY146735-1|AAO12095.1|  149|Anopheles gambiae odorant-binding pr...    27   2.3  
AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.    25   9.3  

>AY146735-1|AAO12095.1|  149|Anopheles gambiae odorant-binding
           protein AgamOBP25 protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 360 ILAGMCMEAPIVANAMPPGKFADFTNVLHGEQY 392
           +L+ +C++A +   A PP    D + + +GE +
Sbjct: 9   VLSAICLDALVDGAAAPPPDLEDVSKIANGEAF 41


>AJ304411-1|CAC39104.1|  187|Anopheles gambiae LDL receptor protein.
          Length = 187

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 641 ITDNGKTVKQWTLDL 655
           + DNGKT K W L L
Sbjct: 32  LKDNGKTCKSWPLQL 46


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.133    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,511
Number of Sequences: 2123
Number of extensions: 27094
Number of successful extensions: 43
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 2
length of query: 722
length of database: 516,269
effective HSP length: 69
effective length of query: 653
effective length of database: 369,782
effective search space: 241467646
effective search space used: 241467646
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)