Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001928-TA|BGIBMGA001928-PA|IPR002078|Sigma-54 factor,
interaction region, IPR003577|Ras small GTPase, Ras type,
IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small GTPase, Rho
type, IPR002041|GTP-binding nuclear protein Ran, IPR001806|Ras GTPase,
IPR005225|Small GTP-binding protein domain, IPR013753|Ras
         (214 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   1.8  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    21   7.4  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    21   7.4  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    21   7.4  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 102 EDARQHSNSNMVIMLIGNKSDLESRRE 128
           ++ R    S+MV  L GN SDLE+  E
Sbjct: 43  DEDRFSFTSSMVQSLDGNSSDLENSSE 69


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 68  FRSITRSYYRGAAGALLVYDI 88
           F SITR      AGA++ Y++
Sbjct: 350 FFSITRGLILSIAGAIVSYEL 370


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 68  FRSITRSYYRGAAGALLVYDI 88
           F SITR      AGA++ Y++
Sbjct: 385 FFSITRGLILSIAGAIVSYEL 405


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 68  FRSITRSYYRGAAGALLVYDI 88
           F SITR      AGA++ Y++
Sbjct: 385 FFSITRGLILSIAGAIVSYEL 405


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,280
Number of Sequences: 317
Number of extensions: 1603
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 214
length of database: 114,650
effective HSP length: 54
effective length of query: 160
effective length of database: 97,532
effective search space: 15605120
effective search space used: 15605120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)